Gene
RNA
| Item | Value |
|---|---|
| gene id | rdm1 |
| gene name | rdm1 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 65526572 ~ 65534174 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| rdm1 | Predicted to enable DNA binding activity and RNA binding activity. Predicted to be located in cytoplasm and nucleus. Predicted to be active in nucleolus. Orthologous to human RDM1 (RAD52 motif containing 1). |
| description |
|---|
| RAD52 motif-containing protein 1 |
| id | name | namespace |
|---|---|---|
| GO:0006310 | DNA recombination | biological_process |
| GO:0006281 | DNA repair | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| id | description |
|---|---|
| K10874 | RDM1, RAD52B; RAD52 motif-containing protein 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021624593.2 | True | 1271 | mRNA | 0.46 | 7 | 65526572 | 65534174 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| gh1 | gh1 | coding | upstream | 5209 | 65517229 ~ 65521363 (+) |
| scn4ab | LOC106600868 | coding | upstream | 29763 | 65460530 ~ 65496809 (+) |
| kansl1b | LOC106600871 | coding | upstream | 156864 | 65287663 ~ 65369708 (+) |
| cdc27 | LOC106600875 | coding | upstream | 242646 | 65250454 ~ 65283926 (+) |
| crhr1 | LOC106600876 | coding | upstream | 409193 | 64951031 ~ 65117379 (+) |
| ifn3 | ifn3 | coding | downstream | 113761 | 65647935 ~ 65649954 (+) |
| LOC118937709 | LOC106600970 | coding | downstream | 128558 | 65662732 ~ 65663781 (+) |
| LOC110538937 | LOC106600965 | coding | downstream | 135128 | 65669302 ~ 65670295 (+) |
| ifnphi1 | LOC106600969 | coding | downstream | 140826 | 65675000 ~ 65676578 (+) |
| ifn1 | ifn1 | coding | downstream | 172257 | 65706431 ~ 65710575 (+) |
| G1100443 | NA | non-coding | upstream | 76003 | 65450229 ~ 65450569 (+) |
| G1100441 | NA | non-coding | upstream | 83432 | 65442899 ~ 65443140 (+) |
| G1100374 | LOC106612182 | non-coding | upstream | 260407 | 65265943 ~ 65266165 (+) |
| G1100368 | NA | non-coding | upstream | 271199 | 65255166 ~ 65255373 (+) |
| G1100800 | NA | non-coding | downstream | 41445 | 65575619 ~ 65597668 (+) |
| G1100821 | NA | non-coding | downstream | 75404 | 65609578 ~ 65617409 (+) |
| LOC110538052 | ifn1 | non-coding | downstream | 272749 | 65802490 ~ 65807617 (+) |
| G1101009 | NA | non-coding | downstream | 325646 | 65859820 ~ 65971064 (+) |
| G1101013 | NA | non-coding | downstream | 331358 | 65865532 ~ 65893566 (+) |
| G1100432 | NA | other | upstream | 93115 | 65433140 ~ 65433457 (+) |
| si:dkey-110g7.8 | LOC106600891 | other | upstream | 1150358 | 64369958 ~ 64376356 (+) |
| G1097122 | NA | other | upstream | 1271508 | 64254612 ~ 64255064 (+) |
| G1097116 | NA | other | upstream | 1297888 | 64228001 ~ 64228684 (+) |
| G1097063 | NA | other | upstream | 1389868 | 64136358 ~ 64136704 (+) |
| LOC110538063 | abi1 | other | downstream | 615035 | 66148710 ~ 66168256 (+) |
| LOC110538072 | psd3 | other | downstream | 1127790 | 66661875 ~ 66670815 (+) |
| G1101805 | NA | other | downstream | 1190487 | 66724661 ~ 66822261 (+) |
| G1102021 | NA | other | downstream | 1524561 | 67058735 ~ 67059407 (+) |
| G1102115 | NA | other | downstream | 1691178 | 67225352 ~ 67225799 (+) |
