ifn1 (ifn1)


Basic Information

Item Value
gene id ifn1
gene name ifn1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 65706431 ~ 65710575 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624606.2
ATTCACTTTTCATTTGTAGCGCAACAGCAGAAGACAACGGAACAATATGTCGGACTAACTTTGAACGAAACCCACTAAATGAATGTCTTATATGGCTACATTTCTTAAGAAGTGTGGGTTTTATTTCGACTCCGACGATTTTGTTATTAGACTTTTTTTCTCGGTTCACGCGAAGTTATTCGCAGTTGAAAGCAAAGCTCGCGAATAGCCTTTACTCGCTATAGTAATAGCCTAGCCGGTATCTAAATGGAATAATATTTTCTTGTGGTTCAACTATAATTTAAAGCTGCTTTCAAGGAGAATGTGTATAGATTTACTTGGATTTGTTCGTCCAGGAGACGGAGCAGGCATGGAATTCCAAGTGCTACATGTGCTAGTCTGGAAAATGAAAGTCCCCGCCTCCGTATGCAGAGCGTGTGTCATTGCTGTGACTGGATCCGACACCATTACGGTCACTTGAGCGCAGAATACCTTTCCCTGCTGGACCAGATGGGAGGAGATATCACAAACCAGAATGCCCCAGTCCTTTTCCCAACATCACTTTACAGACACATAGATGATGCTGAGTTTGAGGACAAAGTCAGATTCCTGAAAGAGACCATCTATCAAATCACAAAACTGTTTGATGGGAATATGAAATCTGTCACCTGGGACAAGAAAAACCTGGACGATTTCCTCAACATTCTAGAACGGCAATTGGAGAACCTTAATTCCTGTGTATCACCTGCCATGAAACCTGAGAGGAGACTGAAACACTACTTCAAGAAGTTGAATAGGAAGGTTCTGAGAAAAATGAACTACAGTGCACAGGCGTGGGAGCTCATCAGGAAAGAGACGAAACGTCATCTGCAAAGATTGGATATCCTTGCAGCACAGATGTACTGATCATCCAGACTCATTTCAGAAGCTACGCCCTTACCAGTTTATAAAGCATGAATACAATCATGTGGGACCCTGTCAGTCTATTTATTATATTTAAATCCATAaattattgttttttatttttataatttattatttatattttgtatTTCCCTTTTGTACATGTGTTGAACTGAACTGTATTGCCTGTCTACTTGAAAAAAACTGTTTAAAAATAATAttgaaaatgtgaataaaaaCGTATTTTGTA
>NM_001124531.1
aaactcATCTGGATAACTAACAGCGAAACAAACTGCAATTTACAATGTATACAATGCAAAGCTGGAGTTGTATTTTTCTTATTATTTGCAGTATGCAGAGCGTGTGTCATTGCTGTGACTGGATCCGACACCATTACGGTCACTTGAGCGCAGAATACCTTTCCCTGCTGGACCAGATGGGAGGAGATATCACAAACCAGAATGCCCCAGTCCTTTTCCCAACATCACTTTACAGACACATAGATGATGCTGAGTTTGAGGACAAAGTCAGATTCCTGAAAGAGACCATCTATCAAATCACAAAACTGTTTGATGGGAATATGAAATCTGTCACCTGGGACAAGAAAAACCTGGACGATTTCCTCAACATTCTAGAACGGCAATTGGAGAACCTTAATTCCTGTGTATCACCTGCCATGAAACCTGAGAGGAGACTGAAACACTACTTCAAGAAGTTGAATAGGAAGGTTCTGAGAAAAATGAACTACAGTGCACAGGCGTGGGAGCTCATCAGGAAAGAGACGAAACGTCATCTGCAAAGATTGGATATCCTTGCAGCACAGATGTACTGATCATCCAGACTCATTTCAGAAGCTACGCCCTTACCAGTTTATAAAGCATGAATACAATCATGTGGGACCCTGTCAGTCTATTTATTATATTTAAATCCATAaattattgttttttatttttataatttattatttatattttgtatTTCCCTTTTGTACATGT

Function

NR:

description
interferon a3 precursor

GO:

id name namespace
GO:0051607 defense response to virus biological_process
GO:0005615 extracellular space cellular_component
GO:0005125 cytokine activity molecular_function
GO:0005126 cytokine receptor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624606.2 False 1132 mRNA 0.39 6 65706431 65710575
NM_001124531.1 True 735 mRNA 0.39 5 65706917 65710491

Neighbor

gene id symbol gene type direction distance location
ifnphi1 LOC106600969 coding upstream 29853 65675000 ~ 65676578 (+)
LOC110538937 LOC106600965 coding upstream 36136 65669302 ~ 65670295 (+)
LOC118937709 LOC106600970 coding upstream 42650 65662732 ~ 65663781 (+)
ifn3 ifn3 coding upstream 56477 65647935 ~ 65649954 (+)
rdm1 rdm1 coding upstream 172257 65526572 ~ 65534174 (+)
LOC110517168 ifn1 coding downstream 15905 65726480 ~ 65730625 (+)
LOC110511235 ifn1 coding downstream 30836 65741411 ~ 65745557 (+)
LOC110538043 ifn1 coding downstream 45328 65755903 ~ 65760060 (+)
LOC110538049 LOC106600867 coding downstream 80703 65791278 ~ 65793249 (+)
LOC110538052 ifn1 coding downstream 91915 65802490 ~ 65807617 (+)
G1100821 NA non-coding upstream 89022 65609578 ~ 65617409 (+)
G1100800 NA non-coding upstream 108763 65575619 ~ 65597668 (+)
G1100472 NA non-coding upstream 173560 65524903 ~ 65532871 (+)
G1100443 NA non-coding upstream 255862 65450229 ~ 65450569 (+)
G1100441 NA non-coding upstream 263291 65442899 ~ 65443140 (+)
G1101009 NA non-coding downstream 149245 65859820 ~ 65971064 (+)
G1101013 NA non-coding downstream 154957 65865532 ~ 65893566 (+)
G1101016 NA non-coding downstream 163796 65874371 ~ 65928968 (+)
G1101312 NA non-coding downstream 468355 66178930 ~ 66179473 (+)
G1100432 NA other upstream 272974 65433140 ~ 65433457 (+)
si:dkey-110g7.8 LOC106600891 other upstream 1330217 64369958 ~ 64376356 (+)
G1097122 NA other upstream 1451367 64254612 ~ 64255064 (+)
G1097116 NA other upstream 1477747 64228001 ~ 64228684 (+)
G1097063 NA other upstream 1569727 64136358 ~ 64136704 (+)
LOC110538063 abi1 other downstream 438634 66148710 ~ 66168256 (+)
LOC110538072 psd3 other downstream 951389 66661875 ~ 66670815 (+)
G1101805 NA other downstream 1014086 66724661 ~ 66822261 (+)
G1102021 NA other downstream 1348160 67058735 ~ 67059407 (+)
G1102115 NA other downstream 1514777 67225352 ~ 67225799 (+)

Expression


Co-expression Network