LOC110517168 (ifn1)


Basic Information

Item Value
gene id LOC110517168
gene name ifn1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 65726480 ~ 65730625 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938094.1
TGAGAGATGTGGGTATTGACGCTGACGTCTCCCATTCACTTTTCATTTGAAGCGCAACAGCAGAAGACTACGGAACAACATTTCGGACTAACTTTGAACGAAACCCACTAAATGAATGTGTTATATGGCTACATCTCTTTAAAAGTGTGGGTTTTATTTCGACTCCGACGATTTTGTTATCAGACTTTTTTCCTCGGTTCACGCGAAGTTATTAGCAGTTGAAAGCAAAGCTCGCGAATAGCCTATTCTCGCTATAGTAATAGTCTAGCCGATATCTAGATTGAATAATATTTCATTGTGGTTCAACTATAATTTAAAGCTGTTTTCAAGGAGAATGTGTATAGATTTACTTGGATTTGTTCGTCCAGGAGACGGGGCAGGCATGGAATTCCAAGTGCTACATGTGCTAGTCCGGAAAATGAAAGTCCCCGCCTCCGTATGCAGAGCGTGTGTCATTGCTGTGACTGGATCCGACACCACTACGGTCACTTGAGCGCAGAATACCTTTCCCTGCTGGACCAGATGGGAGGAGATATCACAAAACAGAATGCCCCAGTCCTTTTCCCAACATCACTTTACAGACACATAGATGATGCTGAGTTTGAGGACAAAGTCATATTCCTGAAAGAGACCATCTATCAAATCACAAAACTGTTTGATGGGAATATGAAATCTGTCACCTGGGACAAGAAAAACCTGGACGATTTCCTCAACATTCTAGAACGCCAATTGGAGAACCTTAATTCCTGTGTATCACCTGCCATGAAACCTGAGAGGAGACTGAAACGGTACTTCAAGAAGTTGAATAGTAAGGTTCTGAGAAAAATGAACTACAGTGCACAGGCGTGGGAGCTCATCAGGAAAGAGATGAAACGTCATCTGCAAAGATTGGATATCCTTGCAGCACAGATGTACTGATCATCCAGACTCATTTCAGAAGCTACGCCCTTACCAGTTTATAAAGCATGAATACAATCATGTGGGACCCTGTCAGTCTATTTATTATATTTAAATCCATAaattattgttttttatttttataatttattatttatattttgtatTTCCCTTTTGTACATGTGTTGAACTGAACTGTATTGCCGGTCTACTTGAAAAACCAGTGAAAAGATAATATTGCAAATGTGAATAAAAACGTATTTTGTAAAATTT
>XM_036938093.1
ATGTATACAATGCAGAGCTGGAGTTGTATTTTTCTTATTATTTGCAGTATGCAGAGCGTGTGTCATTGCTGTGACTGGATCCGACACCACTACGGTCACTTGAGCGCAGAATACCTTTCCCTGCTGGACCAGATGGGAGGAGATATCACAAAACAGAATGCCCCAGTCCTTTTCCCAACATCACTTTACAGACACATAGATGATGCTGAGTTTGAGGACAAAGTCATATTCCTGAAAGAGACCATCTATCAAATCACAAAACTGTTTGATGGGAATATGAAATCTGTCACCTGGGACAAGAAAAACCTGGACGATTTCCTCAACATTCTAGAACGCCAATTGGAGAACCTTAATTCCTGTGTATCACCTGCCATGAAACCTGAGAGGAGACTGAAACGGTACTTCAAGAAGTTGAATAGTAAGGTTCTGAGAAAAATGAACTACAGTGCACAGGCGTGGGAGCTCATCAGGAAAGAGATGAAACGTCATCTGCAAAGATTGGATATCCTTGCAGCACAGATGTACTGATCATCCAGACTCATTTCAGAAGCTACGCCCTTACCAGTTTATAAAGCATGAATACAATCATGTGGGACCCTGTCAGTCTATTTATTATATTTAAATCCATAaattattgttttttatttttataatttattatttatattttgtatTTCCCTTTTGTACATGTGTTGAACTGAACTGTATTGCCGGTCTACTTGAAAAACCAGTGAAAAGATAATATTGCAAATGTGAATAAAAACGTATTTTGTAAAATTT

Function

NR:

description
interferon a3-like isoform X1

GO:

id name namespace
GO:0051607 defense response to virus biological_process
GO:0005615 extracellular space cellular_component
GO:0005125 cytokine activity molecular_function
GO:0005126 cytokine receptor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938094.1 False 1170 mRNA 0.39 6 65726480 65730625
XM_036938093.1 True 780 mRNA 0.38 5 65727043 65730625

Neighbor

gene id symbol gene type direction distance location
ifn1 ifn1 coding upstream 15905 65706431 ~ 65710575 (+)
ifnphi1 LOC106600969 coding upstream 49902 65675000 ~ 65676578 (+)
LOC110538937 LOC106600965 coding upstream 56185 65669302 ~ 65670295 (+)
LOC118937709 LOC106600970 coding upstream 62699 65662732 ~ 65663781 (+)
ifn3 ifn3 coding upstream 76526 65647935 ~ 65649954 (+)
LOC110511235 ifn1 coding downstream 10786 65741411 ~ 65745557 (+)
LOC110538043 ifn1 coding downstream 25278 65755903 ~ 65760060 (+)
LOC110538049 LOC106600867 coding downstream 60653 65791278 ~ 65793249 (+)
LOC110538052 ifn1 coding downstream 71865 65802490 ~ 65807617 (+)
LOC110539157 LOC106596190 coding downstream 88345 65818970 ~ 65820338 (+)
G1100821 NA non-coding upstream 109071 65609578 ~ 65617409 (+)
G1100800 NA non-coding upstream 128812 65575619 ~ 65597668 (+)
G1100472 NA non-coding upstream 193609 65524903 ~ 65532871 (+)
G1100443 NA non-coding upstream 275911 65450229 ~ 65450569 (+)
G1100441 NA non-coding upstream 283340 65442899 ~ 65443140 (+)
G1101009 NA non-coding downstream 129195 65859820 ~ 65971064 (+)
G1101013 NA non-coding downstream 134907 65865532 ~ 65893566 (+)
G1101016 NA non-coding downstream 143746 65874371 ~ 65928968 (+)
G1101312 NA non-coding downstream 448305 66178930 ~ 66179473 (+)
G1100432 NA other upstream 293023 65433140 ~ 65433457 (+)
si:dkey-110g7.8 LOC106600891 other upstream 1350266 64369958 ~ 64376356 (+)
G1097122 NA other upstream 1471416 64254612 ~ 64255064 (+)
G1097116 NA other upstream 1497796 64228001 ~ 64228684 (+)
G1097063 NA other upstream 1589776 64136358 ~ 64136704 (+)
LOC110538063 abi1 other downstream 418584 66148710 ~ 66168256 (+)
LOC110538072 psd3 other downstream 931339 66661875 ~ 66670815 (+)
G1101805 NA other downstream 994036 66724661 ~ 66822261 (+)
G1102021 NA other downstream 1328110 67058735 ~ 67059407 (+)
G1102115 NA other downstream 1494727 67225352 ~ 67225799 (+)

Expression


Co-expression Network