LOC110511235 (ifn1)


Basic Information

Item Value
gene id LOC110511235
gene name ifn1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 65741411 ~ 65745557 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938096.1
TGAGAGATGTGGGTATTGACGCTGACGTCTCCCATTCACTTTTCATTTGAAGCGCAACAGCAGAAGACTACGGAACAACATTTCGGACTAACTTTGAACGAAACCCACTAAATGAATGTGTTATATGGCTACATCTCTTTAAAAGTGTGGGTTTTATTTCGACTCCGACGATTTTGTTATCAGACTTTTTTCCTCGGTTCACGCGAAGTTATTAGCAGTTGAAAGCAAAGCTCGCGAATAGCCTATTCTCGCTATAGTAATAGTCTAGCCGATATCTAGATTGAATAATATTTCATTGTGGTTCAACTATAATTTAAAGCTGTTTTCAAGGAGAATGTGTATAGATTTACTTGGATTTGTTCGTCCAGGAGACGGGGCAGGCATGGAATTCCAAGTGCTACATGTGCTAGTCCGGAAAATGAAAGTCCCCGCCTCCGTATGCAGAGCGTGTGTCATTGCTGTGACTGGATCCGACACCACTACGGTCACTTGAGCGCAGAATACCTTTCCCTGCTGGACCAGATGGGAGGAGATATCACAAAACAGAATGCCCCAGTCCTTTTCCCAACATCACTTTACAGACACATAGATGATGCTGAGTTTGAGGACAAAGTCATATTCCTGAAAGAGACCATCTATCAAATCACAAAACTGTTTGATGGGAATATGAAATCTGTCACCTGGGACAAGAAAAACCTGGACGATTTCCTCAACATTCTAGAACGCCAATTGGAGAACCTTAATTCCTGTGTATCACCTGCCATGAAACCTGAGAGGAGACTGAAACGGTACTTCAAGAAGTTGAATAGTAAGGTTCTGAGAAAAATGAACTACAGTGCACAGGCGTGGGAGCTCATCAGGAAAGAGATGAAACGTCATCTGCAAAGATTGGATATCCTTGCAGCACAGATGTACTGATCATCCAGACTCATTTCAGAAGCTACGCCCTTACCAGTTTATAAAGCATGAATACAATCATGTGGGACCCTGTCAGTCTATTTATTATATTTAAATCCATAaattattgttttttatttttataatttattatttatattttgtatTTCCCTTTTGTACATGTGTTGAACTGAACTGTATTGCCGGTCTACTTGAAAAACCAGTGAAAAGATAATATTGCAAATGTGAATAAAAACGTATTTTGTACAAATT
>XM_036938095.1
ATGTATACAATGCAGAGCTGGAGTTGTATTTTTCTTATTATTTGCAGTATGCAGAGCGTGTGTCATTGCTGTGACTGGATCCGACACCACTACGGTCACTTGAGCGCAGAATACCTTTCCCTGCTGGACCAGATGGGAGGAGATATCACAAAACAGAATGCCCCAGTCCTTTTCCCAACATCACTTTACAGACACATAGATGATGCTGAGTTTGAGGACAAAGTCATATTCCTGAAAGAGACCATCTATCAAATCACAAAACTGTTTGATGGGAATATGAAATCTGTCACCTGGGACAAGAAAAACCTGGACGATTTCCTCAACATTCTAGAACGCCAATTGGAGAACCTTAATTCCTGTGTATCACCTGCCATGAAACCTGAGAGGAGACTGAAACGGTACTTCAAGAAGTTGAATAGTAAGGTTCTGAGAAAAATGAACTACAGTGCACAGGCGTGGGAGCTCATCAGGAAAGAGATGAAACGTCATCTGCAAAGATTGGATATCCTTGCAGCACAGATGTACTGATCATCCAGACTCATTTCAGAAGCTACGCCCTTACCAGTTTATAAAGCATGAATACAATCATGTGGGACCCTGTCAGTCTATTTATTATATTTAAATCCATAaattattgttttttatttttataatttattatttatattttgtatTTCCCTTTTGTACATGTGTTGAACTGAACTGTATTGCCGGTCTACTTGAAAAACCAGTGAAAAGATAATATTGCAAATGTGAATAAAAACGTATTTTGTACAAATT

Function

NR:

description
interferon a3-like isoform X1

GO:

id name namespace
GO:0051607 defense response to virus biological_process
GO:0005615 extracellular space cellular_component
GO:0005125 cytokine activity molecular_function
GO:0005126 cytokine receptor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938096.1 False 1170 mRNA 0.39 6 65741411 65745557
XM_036938095.1 True 780 mRNA 0.38 5 65741974 65745557

Neighbor

gene id symbol gene type direction distance location
LOC110517168 ifn1 coding upstream 10786 65726480 ~ 65730625 (+)
ifn1 ifn1 coding upstream 30836 65706431 ~ 65710575 (+)
ifnphi1 LOC106600969 coding upstream 64833 65675000 ~ 65676578 (+)
LOC110538937 LOC106600965 coding upstream 71116 65669302 ~ 65670295 (+)
LOC118937709 LOC106600970 coding upstream 77630 65662732 ~ 65663781 (+)
LOC110538043 ifn1 coding downstream 10346 65755903 ~ 65760060 (+)
LOC110538049 LOC106600867 coding downstream 45721 65791278 ~ 65793249 (+)
LOC110538052 ifn1 coding downstream 56933 65802490 ~ 65807617 (+)
LOC110539157 LOC106596190 coding downstream 73413 65818970 ~ 65820338 (+)
LOC110539158 LOC106600867 coding downstream 88066 65833623 ~ 65835321 (+)
G1100821 NA non-coding upstream 124002 65609578 ~ 65617409 (+)
G1100800 NA non-coding upstream 143743 65575619 ~ 65597668 (+)
G1100472 NA non-coding upstream 208540 65524903 ~ 65532871 (+)
G1100443 NA non-coding upstream 290842 65450229 ~ 65450569 (+)
G1100441 NA non-coding upstream 298271 65442899 ~ 65443140 (+)
G1101009 NA non-coding downstream 114263 65859820 ~ 65971064 (+)
G1101013 NA non-coding downstream 119975 65865532 ~ 65893566 (+)
G1101016 NA non-coding downstream 128814 65874371 ~ 65928968 (+)
G1101312 NA non-coding downstream 433373 66178930 ~ 66179473 (+)
G1100432 NA other upstream 307954 65433140 ~ 65433457 (+)
si:dkey-110g7.8 LOC106600891 other upstream 1365197 64369958 ~ 64376356 (+)
G1097122 NA other upstream 1486347 64254612 ~ 64255064 (+)
G1097116 NA other upstream 1512727 64228001 ~ 64228684 (+)
G1097063 NA other upstream 1604707 64136358 ~ 64136704 (+)
LOC110538063 abi1 other downstream 403652 66148710 ~ 66168256 (+)
LOC110538072 psd3 other downstream 916407 66661875 ~ 66670815 (+)
G1101805 NA other downstream 979104 66724661 ~ 66822261 (+)
G1102021 NA other downstream 1313178 67058735 ~ 67059407 (+)
G1102115 NA other downstream 1479795 67225352 ~ 67225799 (+)

Expression


Co-expression Network