LOC110538942 (ifne)


Basic Information

Item Value
gene id LOC110538942
gene name ifne
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 66011207 ~ 66012308 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625910.2
TCAACTGACTGCACACATGGCAACTCTTAACGTGTCCTTTGTGGTACATCTTCTGTGTATAATTGTTTTTTACCCGGCTGTGTATGCTAAATGCAGTGCTCCAAAAGTGCAAAAATATTATCTTTCTCAAACTCACCAGACCCTCAATGATCTTGCCGAGGAGAGGTTACCAAGAGGCTGTATCCCAGAAGCTGAAAGGTTAAGGGTCCAACGTCCAGCGCTTCCAATAGAGgagggggaaaaggtttgGACACTGAGACTTGCGTTTCAACTAGCCAGCGAGCTCTTCCAACAAAACCTAACTCTTGTGAAATGGAATTCCGTCAAACTCAGGGACCTTCAAGACCTTCTTGCTCGACAAAATATGACCTATTCGGAATGTGTGAGAGACATGAGTGTGCATCTAAACCTTCCAATTAAGAACTACTTCAAAGAGCTGGAAGACTTTCTTTCACATGAGCGTTTCAGCGCGTGCTCATGGGAGCTCGTGAGAGCTGAAATGGGGAGCATCATTTCACAAGCAATCAGAAATGCCAAGAAACACGTGTGA

Function

symbol description
ifne Predicted to enable cytokine activity and type I interferon receptor binding activity. Predicted to be involved in several processes, including B cell activation; defense response to other organism; and lymphocyte activation involved in immune response. Predicted to be active in extracellular space.

NR:

description
interferon epsilon

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625910.2 True 550 mRNA 0.45 5 66011207 66012308

Neighbor

gene id symbol gene type direction distance location
LOC110539158 LOC106600867 coding upstream 175886 65833623 ~ 65835321 (+)
LOC110539157 LOC106596190 coding upstream 190869 65818970 ~ 65820338 (+)
LOC110538052 ifn1 coding upstream 203590 65802490 ~ 65807617 (+)
LOC110538049 LOC106600867 coding upstream 217958 65791278 ~ 65793249 (+)
LOC110538043 ifn1 coding upstream 251147 65755903 ~ 65760060 (+)
LOC110538062 LOC106600863 coding downstream 93035 66105343 ~ 66142689 (+)
LOC110538065 LOC106600861 coding downstream 130519 66142827 ~ 66146921 (+)
LOC110538064 NA coding downstream 134818 66147126 ~ 66148605 (+)
LOC110538063 abi1 coding downstream 136402 66148710 ~ 66168256 (+)
rarab LOC106600859 coding downstream 290480 66302788 ~ 66485858 (+)
G1101009 NA non-coding upstream 40143 65859820 ~ 65971064 (+)
G1101016 NA non-coding upstream 82239 65874371 ~ 65928968 (+)
G1101013 NA non-coding upstream 117641 65865532 ~ 65893566 (+)
G1100821 NA non-coding upstream 393798 65609578 ~ 65617409 (+)
G1101312 NA non-coding downstream 166622 66178930 ~ 66179473 (+)
G1101321 NA non-coding downstream 175480 66187788 ~ 66188028 (+)
G1101390 NA non-coding downstream 271760 66284068 ~ 66284290 (+)
G1101575 NA non-coding downstream 279065 66291373 ~ 66291581 (+)
G1101607 NA non-coding downstream 319643 66331951 ~ 66332170 (+)
G1100432 NA other upstream 577750 65433140 ~ 65433457 (+)
si:dkey-110g7.8 LOC106600891 other upstream 1634993 64369958 ~ 64376356 (+)
G1097122 NA other upstream 1756143 64254612 ~ 64255064 (+)
G1097116 NA other upstream 1782523 64228001 ~ 64228684 (+)
G1097063 NA other upstream 1874503 64136358 ~ 64136704 (+)
LOC110538072 psd3 other downstream 649656 66661875 ~ 66670815 (+)
G1101805 NA other downstream 712353 66724661 ~ 66822261 (+)
G1102021 NA other downstream 1046427 67058735 ~ 67059407 (+)
G1102115 NA other downstream 1213044 67225352 ~ 67225799 (+)

Expression


Co-expression Network