LOC110538069 (LOC106600960)


Basic Information

Item Value
gene id LOC110538069
gene name LOC106600960
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 66247414 ~ 66248381 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624639.2
CACAAGTTCAGAAACACTCACTGGGAGTAGCTTGCCGACCAAGAGATCCTCACAGCAAGAGATCCAAGGAACTCACACTCTTCTTCTTCTAAGCAGACCGGAAAGGAAAACAGAAAAAATAACAACATGACTCAGTCCGCTGCCCCAGCAATCGAGAGCATCTTTGGAAACGACCCTTTCTTCAGTCAGGAGAGGATGGTCTTCCCCCCCATGCACCACCAGGCCCTATCTGGCATCCAAGAGGACTTCTTCCAGAGGAGGTCCAACCTGGCCAGTGATCTCCTCAAAGAGCTCCGCGATGGGCTCCCCAGTATGTACCAGCTGCACGAGAGGGCCCACCTCCGAATGGGCTCCCCATTCCTGGAGAGGAGGAGCACAGGAGTTCCAGCAGGAGCTCTGAGCCAGGGCCTCAGCACGGAGGTGGCTGAGACAGGCCGGAGCCATAGCCCCCTGGCCCTGAGCCTAAACGCCCAGGGCTTCAACCCAGAAGACATCACAGTCAAGCTGGACGGACGGAGGCTAGCCGTGGTGGCCATGAAACAGGCCAAAGCAGAAGAGGCTAAATCCACCTCCTCTGCCATCTCTTCCtgctccttttcctcctcctcgtccCAACAGAAAGGCTTTGTTCAGAAAATTGACCTGCCTGCTCACCTAGACCTGACAGCCTTGACCTGCTCTCTGGGAGAAGATGGACAGCTGAGAATCGAAGCCCCCACTGCCTCCCCCCAGCTGGAAGCTCCTACAGCAGAGCAGGAGGTCCCCCTCCGCTTCAGAACCTCCCTGGACGTACCCATAGCCAAGGGCAACACGGACGAGTCCATAacagtgaagacctcaaaacctTGAATTATATTTTATGAATCATTTAATTGAATTATCAATCCAGTGGATTACATTGTGGGGAATTGTTTATAATATGCCTATTTGAATAAATATTATTTAATAAACACAATCTGATATTGGAA

Function

NR:

description
heat shock protein Hsp-16.1/Hsp-16.11-like

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624639.2 True 968 mRNA 0.52 1 66247414 66248381

Neighbor

gene id symbol gene type direction distance location
LOC110538067 LOC106607530 coding downstream 24185 66219116 ~ 66223229 (-)
mpp2a LOC106600860 coding downstream 29361 66190991 ~ 66283584 (-)
LOC110538061 LOC106607464 coding downstream 161583 66070667 ~ 66085831 (-)
LOC110538060 gbgt1 coding downstream 190833 66030499 ~ 66056581 (-)
LOC110539161 NA coding downstream 273419 65972527 ~ 65973995 (-)
LOC110538071 LOC106600853 coding upstream 444853 66693234 ~ 66753621 (-)
col1a1 col1a1 coding upstream 516366 66764747 ~ 66785851 (-)
LOC110539163 NA coding upstream 650399 66898754 ~ 66914768 (-)
LOC110486154 LOC106600851 coding upstream 676946 66925327 ~ 66959705 (-)
LOC110538080 LOC106600850 coding upstream 744930 66993311 ~ 67001032 (-)
G1101505 NA non-coding downstream 65778 66181217 ~ 66181636 (-)
G1101504 NA non-coding downstream 66230 66180894 ~ 66181184 (-)
G1101503 NA non-coding downstream 66874 66179673 ~ 66180540 (-)
G1101502 NA non-coding downstream 67919 66178909 ~ 66179495 (-)
G1101465 NA non-coding downstream 104255 66142888 ~ 66143159 (-)
G1101569 NA non-coding upstream 35760 66284141 ~ 66284353 (-)
G1102156 NA non-coding upstream 88545 66336926 ~ 66350179 (-)
G1102157 NA non-coding upstream 88790 66337171 ~ 66379623 (-)
G1102188 NA non-coding upstream 134850 66383231 ~ 66384622 (-)
G1102190 NA non-coding upstream 137330 66385711 ~ 66389385 (-)
G1101510 NA other downstream 60170 66186859 ~ 66187244 (-)
LOC118937713 ifn1 other downstream 345073 65900373 ~ 65904872 (-)
G1099816 NA other downstream 1428685 64818379 ~ 64818729 (-)
G1099535 NA other downstream 1879644 64367415 ~ 64367770 (-)
G1102331 psd3 other upstream 416908 66665289 ~ 66666338 (-)
G1102501 NA other upstream 666468 66914849 ~ 66922557 (-)
G1102527 NA other upstream 676269 66924203 ~ 66925119 (-)
LOC110538083 LOC106600846 other upstream 816909 67064626 ~ 67071678 (-)

Expression

LOC110538069(LOC106600960) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 150.
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LOC110538069(LOC106600960) Expression in each Bioproject

Bar chart with 14 bars.
LOC110538069(LOC106600960) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Co-expression Network