LOC110538943


Basic Information

Item Value
gene id LOC110538943
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 66505512 ~ 66526854 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938109.1
ATACTTATATAGTAGCATCTACATTCACAAGACATTTTGCGACAGAGACTGGTCAACACACTTTTCACCAGAACGCTTGTTCAGGTCGACTAGAGAAAATACCTGTCTTTATTTCTGACATGAAGACCCAAATATGGAATATCTTCTGTCTGACAATGGTCTATCTATGGAATGGACCTCTACCTGCAGGTGCCCAGGTCAGGCTGGTCAATGGGAATGGTCGctgctctgggagagtggagATCTATCACAACAGCCAGTGGGGAACAGTGTGTGATGACAACTGGGATATGAATGATGCTAAGGTGGTCtgtaaacagctggactgtgggAGTGCTGTGAGTTCCCTAGGGTCTGCCTACTTTGGTCAGGGCAGTGGGCAGATCTGGATGGATAATATTGAATGCTCCGGTAGTGAAAGCACACTCAGACAGTGctcacacactacaacacatgaCTGCAATCatggtgaagatgctggagttGTCTGTTCAGGTTCCCAGGTCAGGCTGGTCAATGGGAATGGTCGctgctctgggagagtggagATCTATCACAACAGCCAGTGGGGAACAGTGTGTGATGACAACTGGGATATGAATGATGCTAAGGTGGTCtgtaaacagctggactgtgggAGTGCTATGAGTTCCCCAGGGTCTGCCCGCTTTGGTCAGGGCACTGGGCAGATCTGGATGGATGATATTGAATGCTCTGGTAGTGAAAGCACACTCAGACAGTGCTCACACACTACAAAACATAACTGCAAACATGATGAAGATGCTGGTGTTGTCTGCCTCTCAGTTGTCTTGTTACAGCCCAACATCTCTCTCAATGCTCCAAATGGAGGGATGTTCTGGGGACTTCAGGGGCCAGAGGTGACCAGCGGCCACAGTTTCTCCATCACATGCTCCATTCAGCCACAGTATCCTGGAGGCCTCTTCTATCTGGACTTCTCTGGGTCCAACAGGACTGAAACTAAGCCAGCAGTCAACCACTCTGCCTCCTTTCACTTTCCTGTTGCAGAGTATACAGACCAGGGGAACTACAGTTGTGTTTATGAAGTTAATGTCTCCACCCTGTCATTCCATTCTACCAAGACAGAGTTGCTGACAGTCGGCATTCgagTTGTCTTGTTACAGCCCAACATCTCTCTCAATGCTCCAAATGGAGGGATGTTCTGGGGACTTCAGGGGCCAGAGGTGACCAGGGGCCACAGCTTCTCCATCATCTGCTCCATTCAGCCACAGTATCCTGGAGGCCTCTTCTGCCTGGAATTCTCTGGGTCCAACAGGACTGAAACTAAGCCAGCAGTCAACCACTCTGCCTCCTTTCACTTTCCTGTTGCAGACTATACAGACCAGGGGAACTACAGTTGTGTTTATGAAGTTAATGTCTCCACCCTGTCATTCCATTCTACCAAGACAGAGTTGCTGACAGTCAGCATTCgagCATCCATAGTCCCCATTATTGCCTCTGGTGCAATAGGTGGGCtactgctcctcctcctgctgctcatTCCTTGTCTAGTCTGGAGGAAGATAAGCAGCAGAGAGCAGTCGATTATGATAAACCTGAGAGAAACGATGGAGGGAAATGATGAAGAGGACTATGTCAACGTAGAAACCTTTGTCAACAAGAGAAAAAATGAAGACCTGAAAAAAGGATGCGATGCAGAAATGTATATGAAAAAGGAGTTGCTTACCAGTAAAAATAATGAGAATGCTCCAGGAGCCATGAACAAGTTTGGAAACAACCAAGGTGAAGGGCCAGAGGCAAGTGAGGAAGATGAGGCCGACTATGAAAATGCAGATATCTTCACAGAGAGAGATTTTGCTGAAGACATCTACGATGAAGACAGTGAGTCTTTAGACCTGGAGCAGCTCACTTCATGTAAATCTGGAAGGGAGAATGACTATGAAGAGGATGACAACATATACACAAACTATGAGTGAAGGCCTTGTAATTCGAATGCTGATGCAGAGATATTGATGCCAGGAAAGGCATGAAAGGTTAGCTTTGTGAGTTGAATTATAAGGGCTTAAAAAAACAACTTTTTCATCAAAATGTTCACTTAGTAGATAAGAGCAAAGGCTTTGTTTGAATATTAATTAGAATTTCAACGTAAATAGTTTGGGTGTATTATTTCTAGTTGTATTGTCTCCAGGTACTTGTATGAGTTTTCTGACTTGACTatgttatatatattttaaaataatggcattatattatgacattattTACTTCAGTTTAAAAATAGTGATTGTCTTGATCTATAAtctattatttaattttttaagtATATATTAATACTATTTCTCTTCTATAACGTTCAGTGTGCTGTCAAAGAATAGTCTGTAgcaatgacttgttgtgatgtgcTAAACTTGAGATCTAATGTATGACAaactgtaaaaaacaaaaaacatttgtactgtgtgtgtaaatCTAACAATCATTTGATTTCAGTGTACATTTTCAATTATTGTGTGTATGGCTTTAAAGAACATGAAATCCATGAACCCTGACTACTTTTTACATTGTTAAATTGTTATTGTTGATGTGAGACTTCACTAGATACAGATATGGTCTTAGAAATATGTGGAGATTTAAATATTGTACAACTATACGGTCAACATTTAGAAATAGATCTCTGGACGCAGGAGGCCAAAATCGACCCCGACTAACAACTTTCATTTAGAAAAAAACTATTAAGCAAAGGACTTGATGATGCAGATCTTATTATCACCACAAGGAGGAAATTGTGTCACATCATTCATTATGTccaacacgtgtgtgtgtgtgtgtggttttgggACCGCACAACGATATTAAAAAAAGGAAAATTGGGGACATTTGTGGGAACCCCACAAGGAAAAAAGccattttaggcttag

Function

NR:

description
uncharacterized protein LOC110538943

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938109.1 True 2897 mRNA 0.42 9 66505512 66526854

Neighbor

gene id symbol gene type direction distance location
rarab LOC106600859 coding upstream 19654 66302788 ~ 66485858 (+)
LOC110538063 abi1 coding upstream 337256 66148710 ~ 66168256 (+)
LOC110538064 NA coding upstream 356907 66147126 ~ 66148605 (+)
LOC110538065 LOC106600861 coding upstream 358591 66142827 ~ 66146921 (+)
LOC110538062 LOC106600863 coding upstream 362823 66105343 ~ 66142689 (+)
LOC110538074 LOC106600856 coding downstream 17291 66544145 ~ 66560430 (+)
LOC110538073 LOC106600855 coding downstream 62848 66589702 ~ 66633514 (+)
LOC110538075 LOC106600854 coding downstream 117173 66644027 ~ 66653962 (+)
LOC110538072 psd3 coding downstream 135021 66661875 ~ 66670815 (+)
LOC110538077 LOC106600959 coding downstream 147281 66674135 ~ 66678665 (+)
G1101698 NA non-coding upstream 1719 66487046 ~ 66503793 (+)
G1101697 NA non-coding upstream 18640 66486582 ~ 66486872 (+)
G1101696 NA non-coding upstream 18977 66486050 ~ 66486535 (+)
G1101692 NA non-coding upstream 27719 66477269 ~ 66477793 (+)
G1101754 NA non-coding downstream 63324 66590178 ~ 66590937 (+)
G1101767 NA non-coding downstream 80515 66607369 ~ 66679468 (+)
G1101805 NA non-coding downstream 197807 66724661 ~ 66822261 (+)
G1101907 NA non-coding downstream 338940 66865794 ~ 66866034 (+)
G1101908 NA non-coding downstream 341577 66868431 ~ 66868632 (+)
G1100432 NA other upstream 1072055 65433140 ~ 65433457 (+)
si:dkey-110g7.8 LOC106600891 other upstream 2129298 64369958 ~ 64376356 (+)
G1097122 NA other upstream 2250448 64254612 ~ 64255064 (+)
G1097116 NA other upstream 2276828 64228001 ~ 64228684 (+)
G1102021 NA other downstream 531881 67058735 ~ 67059407 (+)
G1102115 NA other downstream 698498 67225352 ~ 67225799 (+)
LOC110538103 LOC106600823 other downstream 1278495 67793428 ~ 67810071 (+)

Expression


Co-expression Network