LOC110538075 (LOC106600854)


Basic Information

Item Value
gene id LOC110538075
gene name LOC106600854
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 66644027 ~ 66653962 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624649.2
TTGCAGCAGCAGTCTTCCAACGACCTTCCACATTCTCACCACCACCAACGGAAGGCCCCGCCATCTGAACCCCGTTCTCCAAGCTGGGGGTTTTGATGCCAGCAGACCAGCATAGGGCAACCTGTCATCAGCATCTGGCTCCAAGGAGCATTCCTTGGAGACAAGGCCTACTCCAAACTAATCAATAACATTCTATATTGCATTTAGTGTCAGGTTTGAAGATGCACTCATTGCATATAGACTTAGGCCTACACTAATATAAAAAAGGTTTCCGAAACGGttttcggctgtccccatgggagaaccctttttggttccaggtagaaccttctGTGGAACAAGTTCTACCTAGAACTatgggacagccaaataacccttttaggttctagatagcacctttctaGATAGCACACATAGATGGTCTATAATTTGGTAGGTCAGCATTTTGTAGATTCTTGTTATCTCTGAGACGAACAACTAGCAATCCCCCCCATTAGCAATTACTCATTAGCAGCCTACTTCCCATGTGACCATAGGCTATTGTATTGCTCGGATAATTGTTAGGGAAACGTAATTAAACGCAGAACATATTAGCTTTCTCAGCCTTTGCACACTTCCCTTGAATGCTATGCATGACATTAATCATGGAAAGGTTTCCCGCCTCTAAGAAATCACGACGTGGGTTCATGGCCACAGCAGAGCGCACAGCGCAGCAGTAACAAATAGCCATgtactgtagcagtgtgtgttgTGAGGAGATGATATGCTTCGACGCCTGTGCCTGCTTTTGACGGCTCATATTCCAATTTAAGCCGACAAGAATAGGTTACCAATTCCCCTGTGCCCCTCTTTATATTTACACTCGTGTTCATTTCTTCAACAACTAGATAGCGGGGAGCGGAGAGGCAACAACCATCGGTATTGAATGTTGGTAAGCAGGCTCCAGTCCATTGGGCTTTGACGCGGATTCTCGGGCTGCGCTGCATTGCTCGCGAGTACTGTAATCGCAGCTGAGATATGGACGCTGTTCTGTGAAGCATGCTGCACTGACAAATGTTCTCCTCCCGGACAACAAAAACTGAAGTGGCTGGCTGGTTGGTGAAGCTGTGACCTATGCAGGGTTGTCTTGGCTAATGGTCCAGGGGCTGTGTCCTTCTAGGAGGGTATGCCTGTATCCCACCATGCCGCTGCTGGCAGAATGGCTGCTGTGCCACTCCTTGGTGGCATGCCTGCTGCTGCATAGCCTGGTACTCAGCTCCACCACCGCGGGCCTCCATGGGGCGAACACCGGCTGCTCCGAGAGCTGCTACTGCTCCGAGTCTGCAGATGGCGGGAGGGTAGTGCGCTGCAGCAACATGCGCCTGGCTGGGGTGCCGCATGACCTGCCTAACGACACCCGCCGACTTTACCTGGACGGTAACCTCCTCACCACCATCCCCGCTGACGCCTTTGCGGGGCTTCCTTTACTCAACGAGCTGGACCTCTCCCACAATGAGCTAACTCAGATGGAGCCGGGGGCCTTCCGGGGTCTGGTCCCCTCTCTCAGGAGCCTGGACCTGTCCTCTAACAGACTGACCACCCTGGAGCCAGAGGTCCTGGGGGGCCTGAGGGCCCAGGCCAACCTCACCCACAACCCCTGGCACTGTGACTGCCGCCTCCAGGTGGCTATGCCCCGGCTGGACCTGGAACCGGCCTCACTGGCTGGCGTGGTGTGCCACACTTCGGAGCCCAAGGATGTCGGCGTAGATACAGGGGTGCCCTTCGTCATGGTGGCTGCCGACCTGGACCTGTGCGCAGGGCTCAAGAGGACCACGGACGTGGCCATGCTGGTGACCATGTTCGGCTGGTTCGCCATGGTCATCTCCTACCTGGTGTATTACGTCAGGCACAACCAGGAAGACGCACGGAGACACCTGGAGTACCTCAAGTCCCTTCCCAGCAAACTGGACAGACCAGAGGAGTCCTCTACACTGAGCACAGTGGTGTGAGAAGTAAAATACCAGACCTGGGTCAAATGTGTTTTGTCAAGTACTTTCATATTCTGAAAATGAGCATGATTGAGCTTGATTGTTGTGCAAGGAGGTTgcgtttgcacttttgggacgaTTCTATTGTAGTCGGTAAGCTAAATCAAGCGAACCTGTAGTATTTAAAGTATTTGACATATATTTACCTAAGTCAGGTGGCGACAAAGGAAATAACAGCCAAACACCTCAAAAGGATCAAAAAAGGAAATTCCCAAACTTGGAAACCGGGATACTAGTGTACTGTACAAGTTTTCAACCTGTTCATCACCAGTAATCCATTGGAAACACAATACCTCACGGTAACATTTCATTCAAACAAATTCACACTCTTTGATAAATTAAGGCCATTAAATtagacattttttttcttcacatagcTGTTTGTTGAACGAAATAAGGAATTATTTTACACATACATTTGTGAATATTCTACATGTATGTGCAAGTCAGTCTCAGTCTCTGTAAGATACTCTGTATTTGAAAATGATTTAATTCCAACAAGGTATTGAACGATTGTCAAATTTCACAATGGACTGCCGTGGGCaccgttttgttgtttttcaggAATGCATGACGTCATCAAATGTCCCCATAATAGTGATAATACTGTGCTTATCAGTAGAACAGAGACTGCATTGTTCTTCCAGCAGCTGCACTCATTGAATGTTGGATCTTTATTTGCTGGATGAGAAGCCCCATGTAATCGTCAAACATTTTATCAGAAAGAATAAAATCATGAAATGCTCCTTCATTTTTATTTTGGCCACAATACCATATTTTTTTCCACAGTTGTACTGCATGTAATGTTTCATTTCACACTAAGTCTGCCTGAACATATcacattttcatttatttttaagtGAACAATGTGTTCATTATATTGAATTATGAATATTTGACAGACCGTAGTGCAAGATGGCAAAACTAGTTTAGAAATATGAATTGCGCAACTTCAATCAGTGGGTCCCAAAAATGATTTTTTTAAGAAAGAGTTCACTGTCTGAAGTCTTATTTCAATTTCCTCCAAGCCTCATGAATTCCTTTGATCTCACTAACACGTATGTATTTTAGAATTATTAATCTGCTTTAGGGACAGACTGCACTAAATATggcttctgacacacacacacacacacgactaatGGCCACAAAGCACACAGTAAAACTTCACACCCTCAGGCTGTAATAAAAATTATGGATTTGACCCTTGCTCAACGTTTGGAAACTGGGCCTGCCAATGGGCTCACCCCTGGCCACATTATGACGTAGGATGGGAACAAatacagaatggtgttttcctgtcCTACTGGAACTATTAAAACCCTGCCCCTTGACCCTGGTACAGTATCTAGCCACAGTCTGTCTGCTTCCTGTCTGTCTTAGGTGCTCATTTGTGGAGGATGGGAAGATGGgtgtaacctctctctcccttgcgTTTATCTGTCAACCTGAGCTCTTAATGACCATGGGAACAGACACACCACCAATCTGATGCTGAACCCTGAAGGTCACTCTCACGCACGAACACACGTACACaaataaatatagtttacatAATTATACAGTATAGCCTGTTCAATCTTAAAAATGTCAGTCATGAGCCTTACCAGACTCGAATACATTACCCTCACCCGCATGTGTTTATTTGCATGGACAAATGAACTCACTCACATTACCATACATCCTGTAATAGGAGAATGTTTGTACATGGGTGCTATTTAAGCAATATACCAGGGATAAGGGCTGTCCTTAGTCAcgacacagcccttagccttggtatattggccatatatcacaaactcccgaggagccttattgctattataaactggttaccaaagtaattaAAGCaggaaaaaataaatgttttctcaTACCTGTGgtgtacggtctgatataccacggctttcagccaatcagcattcagggctcaaaccacccagtttttaAGAGTGCTGAACATTATCATATTGGTAGTCTGACCTCGCCTCTTAGCTGAACATtattacacacccacacacactctctgtggtGACAGGACAACCCTGTCACCACTGTCACTGAAACCACAGTCCTTGCTCTGCTCCTCAGTTACACCCTGTATTAAGTGAGAAGGCTTTCTCTCAGGAGAAGGAAATGCAAATTTCTTATCTTCATTTTTAAATGTTGTGTCCTCTGGGAAATTAAGACATTTCCTGACTGCTTTTGATTGTAAAGTGTAAAGTGGCTTATTGTCTTGTATTTAGACCTACTGTAGTCAATTGGAAGGTATTGTTGTTTAATAAGAACTGAGGACTCATTTGCATTGTGTTAGTCGAATAGCTCATACTCCTGAAAAGTAGAAGATGGgtataggaacacacacacacacacacacaatgcttctGAGCTCATATCCAACCCTTTCAGAGTTACTAAACTCTCTCCTCCCCAGCTGGTTAATTGCAGGTGAAGGGAACAAGTCCTCTCAGTCCATCTCCCTGAATGAGCTTTGTTGTTTCACTGATTACTTCTGCAATGCAACACTCGCTCCATTGTTTACAAAAGGAAGATAATACGCAGCAGAGAGAAGAACGCTTTGGTTTGCAGCTCCTGATTAGATCTCATAACTTTTGTTCTCTGTCTCGCTCATTTCCTAAATTGCTTTGTGTTCTGTTTGCTTGATTTAACCTCTGTAATCAAGTCCACTAATTGCTTCTAATTTCAATCTCCAGCTGTGTATGATATTATGCGGCATCgaaggttttaaaaaatatatattctctgAAAGGAACTGTCTCTCTGTGGGAGTTGTAAAGGGGCTCCACGCTTGGTGCAGCATTATCTTATTTCTTCAGATGCATTCCTAAAGCCCCTGGTTATCCCACTGACTAGCTAGCAGCATGAACACCTGCATCCAGTCAGTGTGGTGCAGTCAGTGGGGctgctaacctgtgtgtgttctgAGTGGCACTGATTCTGTATGTGCTGTTGTCTGAGATGAACtgtttgtgtgtattatctcAGAGTTTGTACATCGTAGGCTTTCGTGAATGGCTGTGTATTTGTGTTAATGCCTTTGATGGAACTTGTATTTGGTGGTGTTTGTATTGGGAGATTGCATGTCAAAATACAGCTTGTTCTTTATTTATGATGTGAGCTTCAAGGAATGAGTGTGTGTGGTTTaaactgaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgcgtgcgtgcgtgtgtgtgcatgtatggtgggtgtgtatgtgtgtctgtgttgcgTGCGTACCCACCCTCTAAATGGGTAACCTTGCCTGGGGCAGTGTCACCACTGGGAGCTTGGCCGACCGCAGAAGCCAAATCATATCCTGCCACAGCCTCCTGCAGAACAAAACCCACTCCAGCTGGTAAGCGAGCCCACTTTGTCCCCACATCACTAATGCCATGCTTTAGCCTAGATTGATGTTATACTTACATTGTTCCCTAGCCAACCAAGAAGGAACAAGTCTTGAAAACGGAATCAAGGGTAACACCCGTCCTTGGCTAAGGCCTCCCATTATCTTTTCTGTCCACCTACAATTACTGAATGGATGAGCGCTCtgacctcatctctctctctctctctttctctctctctctctctctctcagccttgcATTTAGACTGAATGTTGTATTTACTGCATGGTAGAATTGCAGACTCAAGGCTACAGCTCCCAGGTTTTGTGTGTGCTGGTATAATGACAGGTCTGTGTAATAATGAGCTTGGTCCACACTTCCCACACACTGTGGTAGCTGCTGTTCTAGTCTGTGGCATTCCATCCTCTTTGATAGATACAGGTAAAATAGCTAATCTAATCAGAATGGCCAGTGTAGTGTAGGGCTAGCCAGCCACTTAGCAATTCAAATCTAATTTCACCTGAAGCAGCTGAATATCCCCAAATTGGTAGTAATTTAATTTTGGTTCCGCAAATGAttacaaaataataatttgtgTACTTGCAGCGTTAGGTTTTTGTGAAAGTGGCAGGATTAGTAATAGCAAAAGAAGGATTACCTTTCCTGTAAAAGGTATGGGAAGGGGAATAGAATGAAGGCTGTCACTCACTGCAATTTCCTAGTGAAAAGCATGagttgacacacacaaacacaaatgttTGTGAAGGGGCTGACTAACCATGAGtaagcagtaaaaaaaaatatatatatataaatatttatagaaagaaagaaagttgcACACTATATGCTCCCAACAATTGAATGGGTTAACCTAACCTACTGTGAAGGCCTCTCCCCGCTCTGTCTACTGGGTGTTGCTGTGCTTACGTCCTGCAGGAGATTGGTGGGCGGAGCTGGGAGGGTCAGTCAGTGCTGATGGGGCACACCTGTGACAGCTCAGCTGTGGCATAAAGCCACTGTTTTCCTTATTCAGCTAGAGAGATTCCTCTCTCCATGCATGCCTTTGGTTGTTTAGTTGTGGTTTCGGCAGTTGACTCCTAATTTATATCTGTCATGCCTCATCTGATTATTATTGTGAGTGTTTACTTTATTTATGGAATAAATTCATTTTGTTATTCCTTT

Function

NR:

description
leucine-rich repeat-containing protein 3B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624649.2 True 6593 mRNA 0.45 2 66644027 66653962

Neighbor

gene id symbol gene type direction distance location
LOC110538073 LOC106600855 coding upstream 10513 66589702 ~ 66633514 (+)
LOC110538074 LOC106600856 coding upstream 83597 66544145 ~ 66560430 (+)
LOC110538943 NA coding upstream 117173 66505512 ~ 66526854 (+)
rarab LOC106600859 coding upstream 158169 66302788 ~ 66485858 (+)
LOC110538063 abi1 coding upstream 475771 66148710 ~ 66168256 (+)
LOC110538072 psd3 coding downstream 7913 66661875 ~ 66670815 (+)
LOC110538077 LOC106600959 coding downstream 20173 66674135 ~ 66678665 (+)
LOC110538082 LOC106600849 coding downstream 354051 67008013 ~ 67027138 (+)
LOC110538084 LOC106600841 coding downstream 494839 67148801 ~ 67164013 (+)
LOC118937895 NA coding downstream 627001 67280963 ~ 67292113 (+)
G1101754 NA non-coding upstream 53090 66590178 ~ 66590937 (+)
G1101698 NA non-coding upstream 140234 66487046 ~ 66503793 (+)
G1101697 NA non-coding upstream 157155 66486582 ~ 66486872 (+)
G1101696 NA non-coding upstream 157492 66486050 ~ 66486535 (+)
G1101805 NA non-coding downstream 70699 66724661 ~ 66822261 (+)
G1101907 NA non-coding downstream 211832 66865794 ~ 66866034 (+)
G1101908 NA non-coding downstream 214469 66868431 ~ 66868632 (+)
G1101909 NA non-coding downstream 216319 66870281 ~ 66870569 (+)
G1101922 NA non-coding downstream 238262 66892224 ~ 66892434 (+)
G1100432 NA other upstream 1210570 65433140 ~ 65433457 (+)
si:dkey-110g7.8 LOC106600891 other upstream 2267813 64369958 ~ 64376356 (+)
G1097122 NA other upstream 2388963 64254612 ~ 64255064 (+)
G1097116 NA other upstream 2415343 64228001 ~ 64228684 (+)
G1102021 NA other downstream 404773 67058735 ~ 67059407 (+)
G1102115 NA other downstream 571390 67225352 ~ 67225799 (+)
LOC110538103 LOC106600823 other downstream 1151387 67793428 ~ 67810071 (+)

Expression


Co-expression Network