LOC110538072 (psd3)


Basic Information

Item Value
gene id LOC110538072
gene name psd3
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 66661875 ~ 66670815 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624643.2
AAGTATCACTTTCATCAGCTATCTATTACTTTTGACTGCTCGATATTGTCAGGATCAACTAGTATGAAATGTCCCCATAATCCTTTGCGCGTCACAATAGTTGCCAGTCATTCTGCCGACGAGACGAATACAGTATGAAAGAGACAACAGCCAAGAGACGCGAGAAATCCAAGGACTCCAAAGCTGATAAACAGAAGGATGCGGGCCCCGAGCCGCAGGATGTGGAGATGCCGGAGGAAGACTCTGCTACTGCAGAGAAGAAACCCAAGGAACTTGATACCCTCACACTTgaagACATCAAGGAGCATGTAAAGCAGATAGAGAAGGCCGTGTCGGGCAAGGAGCCTCGCTTTGTGCTGAGGGCCTTGCGTGCCCTGCCCTCCACCAGCCGCCGCCTCAACCCCAATGTGCTGCACAAGGCTGTGTCTGGCTTCTACACCTCCAATGCCGCCGGCAAGGAGTTCCTACTCAGCTTCCTGGAGGAGCCCATGGACACCGAGGGAGATGTCCAGTTCAGGCCCCGTACAGGAAAGGCAGCTGCCACCCCCCTGATCCCTGAAGCGGAGGCCTACCTGCAGCTGCTCCTGGTGGTTTACCTCACCAACAACAAACGCTACACAGAGGCCCAGAAGGTGTCAGACGAGCTCTTACAGAAGATCGGCCCTCAGAACCGGCGGGCTCTGGACCTGGTGGCTGCTAAGTGTTACTACTACCACTCCCGCGTCTACGAGTTCCTCAACCAACTGGACACCGTGCGTAGTTTCCTGCACACGCGCCTGAGGACAGCCACCTTGCGGCACGACGCCGACGGCCAGGCCACGCTGCTCAACCTGCTGCTGAGGAACTACCTGCAGTACAACCTGTACGACCAGGCTGAGAAGCTGGTGTCCAAGTCAGTCTTCCCCGAGCTGGCCAACAACAACGAGTGGGCCCGCTACCTCTACTATACAGGTCGTATCAAGGCTATCCAGCTGGAATACACAGAGGCCAGGAGGACCCTGACCAATGCCTTGAGGAAGGCCCCCCAACACACAGCTGTGGGCTTCAAACAGACAGTCCACAAGTTACTGATTGTGGTGGAGCTGTTGCTTGGGGAGATCCCAGACAGGCTGCAGTTCCGGCAGGCTCCACTGAAGAGATCCCTAGCGCCCTATTTCCTGCTCACCCAGGCTGTCAGGACGGGTAACCTGGCCAAGTTCAACCAGGCCCTGGATCAGTTTGGAGAGAAGTTCCAGGCAGACGGCACCTACACCTTGATCATCCGCCTGCGACACAATGTCATCAAGACAGGTGTGCGTATGATCAGCCTGTCGTACTCTCGTATATCCCTGGCAGACATCGCTCAGAAGCTGCAGCTGGACAGTCCAGAGGATGCTGAGTTCATAGTGGCCAAGGCTATCCGAGATGGAGTGATCGAAGCCAGCATCAACCATGAGAAAGGCTATGTTCAGTCTAAAGAGACCATGGATATCTACGGTACCAGGGAGCCCCAGCTGGCCTTCCACCAGAGGATCTCCTTCTGCCTGGACATACACAATATGTCTGTCAAGGCCATGAGGTTTCCACCCAAGGCTTACAACAAGGACCTAGAATCAGCAGAGGAGCGCAGAGAGCGGGAGCAGCAGGACCTGGAGTTCGCCAAGGAGATGGCCGAAGATGACGACGACAGTTTCCCATGATCCTCTCAGGGGAGCAAGTGCAAGGATGCCTTGACGttttttccctttctctccccctccatcctccctcttgTAATAGTTGTCTTTGTTTATTTCTCTGCAGGCAAATGGCCTTTATAAAGTTATATATCTATGTTAGCATTCTAACATATACTAAGAACACCTCTATTCAACCCTACCACTGGTCCTCGTTGTCCCTGCTTTTAGACTTTGCGTTTCACTGTTAACTTGCTGGTGGAAGCATTTGGTGTATCTGTACTGAGTTTAAGGCCAGCACACAAATAAACAGTCTTTGTCAATTTAATTTCTAATTTGGGGAACACTAATTTGTACAGTGAATGTCTGGAAAACTAAGAGCTGTTTGGCACAGAGCAGCTTGTATTTGTAAGCTTTTCTGTCAGGAATGATGTTGGGTCTTTGATTTGTTATTCTTGCTGCGCAATGCAATTCAATATCTTGACAGCTGCCCTTTCTAAAATGCATAAATGGAAACTCCTATTTCAAAATACCTTGAGGAAATCAATTAATTTGTTGGCCCTCTTGAGAACTGCGTGCCATTGAGCTCAACTAGTTAGATTTCTCTGCCTCATTGTTCACAGCTCCTGTTCCTTCCTCTGATTTCTTCATTTAGCGCCCTCTTCCTCCTACCTCAGGGTGCATCACAATTATCTCTGTTTTTTTCAGGAAGTATGCACTTGTTCCATTCGCTTCATGGATTTTAAAAGAAATGACTGGtataatacagtgcattcagaaagtattcagacccctcatctttttccacattttgttacgttgcagccttattctatctacacacaatgccccataacaAAGAAAAAGCATGTTTTTAGAAAAGGTTGCAAAATTATAaataaatggaaatatcacatttt
>TU1252863
CGTCACAATAGTTGCCAGTCATTCTGCCGACGAGACGAATACAGTATGAAAGAGACAACAGCCAAGAGACGCGAGAAATCCAAGGACTCCAAAGCTGATAAACAGAAGGATGCGGGCCCCGAGCCGCAGGATGTGGAGATGCCGGAGGAAGACTCTGCTACTGCAGAGAAGAAACCCAAGGAACTTGATACCCTCACACTTgaagACATCAAGGAGCATGTAAAGCAGATAGAGAAGGCCGTGTCGGGCAAGGAGCCTCGCTTTGTGCTGAGGGCCTTGCGTGCCCTGCCCTCCACCAGCCGCCGCCTCAACCCCAATGTGCTGCACAAGGCTGTGTCTGGCTTCTACACCTCCAATGCCGCCGGCAAGGAGTTCCTACTCAGCTTCCTGGAGGAGCCCATGGACACCGAGGGAGATGTCCAGTTCAGGCCCCGTACAGGAAAGGCAGCTGCCACCCCCCTGATCCCTGAAGCGGAGGCCTACCTGCAGCTGCTCCTGGTGGTTTACCTCACCAACAACAAACGCTACACAGAGG

Function

symbol description
psd3 Predicted to enable guanyl-nucleotide exchange factor activity and phospholipid binding activity. Predicted to be involved in regulation of ARF protein signal transduction and regulation of catalytic activity. Predicted to be located in membrane. Predicted to be active in ruffle membrane.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624643.2 False 2575 mRNA 0.50 12 66661875 66670815
TU1252863 True 535 TUCP 0.57 4 66661964 66663457

Neighbor

gene id symbol gene type direction distance location
LOC110538075 LOC106600854 coding upstream 7913 66644027 ~ 66653962 (+)
LOC110538073 LOC106600855 coding upstream 28361 66589702 ~ 66633514 (+)
LOC110538074 LOC106600856 coding upstream 101445 66544145 ~ 66560430 (+)
LOC110538943 NA coding upstream 135021 66505512 ~ 66526854 (+)
rarab LOC106600859 coding upstream 176017 66302788 ~ 66485858 (+)
LOC110538077 LOC106600959 coding downstream 3320 66674135 ~ 66678665 (+)
LOC110538082 LOC106600849 coding downstream 337198 67008013 ~ 67027138 (+)
LOC110538084 LOC106600841 coding downstream 477986 67148801 ~ 67164013 (+)
LOC118937895 NA coding downstream 610148 67280963 ~ 67292113 (+)
LOC110538094 NA coding downstream 810247 67481062 ~ 67491128 (+)
G1101754 NA non-coding upstream 70938 66590178 ~ 66590937 (+)
G1101698 NA non-coding upstream 158082 66487046 ~ 66503793 (+)
G1101697 NA non-coding upstream 175003 66486582 ~ 66486872 (+)
G1101696 NA non-coding upstream 175340 66486050 ~ 66486535 (+)
G1101805 NA non-coding downstream 53846 66724661 ~ 66822261 (+)
G1101907 NA non-coding downstream 194979 66865794 ~ 66866034 (+)
G1101908 NA non-coding downstream 197616 66868431 ~ 66868632 (+)
G1101909 NA non-coding downstream 199466 66870281 ~ 66870569 (+)
G1101922 NA non-coding downstream 221409 66892224 ~ 66892434 (+)
LOC110538063 abi1 other upstream 493678 66148710 ~ 66168256 (+)
G1100432 NA other upstream 1228418 65433140 ~ 65433457 (+)
si:dkey-110g7.8 LOC106600891 other upstream 2285661 64369958 ~ 64376356 (+)
G1097122 NA other upstream 2406811 64254612 ~ 64255064 (+)
G1097116 NA other upstream 2433191 64228001 ~ 64228684 (+)
G1102021 NA other downstream 387920 67058735 ~ 67059407 (+)
G1102115 NA other downstream 554537 67225352 ~ 67225799 (+)
LOC110538103 LOC106600823 other downstream 1134534 67793428 ~ 67810071 (+)
G1103416 eif1b other downstream 1316879 67987694 ~ 68048717 (+)

Expression


Co-expression Network