LOC110538077 (LOC106600959)


Basic Information

Item Value
gene id LOC110538077
gene name LOC106600959
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 66674135 ~ 66678665 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938111.1
AAGCGAGAACATTGCCTGTAAATTTCAATCACGCCGTAAAACTGGACTTCCGCAATGTAGATTGAATAGAGACCAAATTATTAGTCACTCACTATTGCAGGTTAACAATGACCCTTCAGTGGAAATTCCCATGAATCGTACTATCATTCATATAAATACTTCAAGTCTCCTTCAAGTCTTTAGCAAAATAGACTAACCATACTGACACGGAATGAACACTCTCAAAATTGTAGGTCTGCTCTGCTGTTCAGCTTTTCTGGTCCGGTCCGCGCATATTCCAGAGAAGTCAATGGACGCAAGGAGTTTGGTCGAAAAAATATTAGGCAACATCCCTGTGGTTCACGAGTCTAGTGTCAAAATCATGGGCCTGACCCTTGACCCGTCCAGCCAGTCTAGGAACATGCCGTACCAGTCCATGGCGACCTCCCTGGGCATCCCCGCAGCACCAGAACTAAGGACTGTCTGCAGACCCCTAAACCAAATCGATTTCACCCtgGAGGTGTGTCTGAGCAGTATGTCTGCGGGGCTGCAGCTGTATCAGGATGTGCTGGGTGAGCTGAAGGAGCGTGTGACCACTGACAAGGTGACAGGACTCCTGGCTGACATCAGAGACCTGCTGGCCCAGGTCAACAAGATGCAGGAGCCTGGCCAGATGAGCAGTGTGGCCCAGTACGAGGCCTCGGGACTGGCCTCACGCCTCCCAGGGGACTACGAGGTTCAGGTTGCAACTCACTTTACCCTGCTGCAGCTCCGTGACTTCACACAGAACCTAAAACGCAGCATGCGCAACATCGAACACCTGACTTCCAGGTCAGGACAGAAGGGCTGAACTGTACTCTACAGCAGAAGCAAAACCTGTGCAGACATGGATGGGGGACCGGAGGGGGGTCGTCCGTGCCAGAAGCCTATTGGACATCTAAGGCAACTGCGTAGTGATGTAGTCTGGCTGAAACATGTTTCATTTCTGTTTGAGCCTGCTTCAATCTTTCTATCTAATCTGTCAAGGTCAAATGGGACATTTGAAAACATGAAGCAAGCGGAGCACTTTATTTATCTGAGATAGGGGATGGCACCAAAACCAATTGTGTAGCGTCCCTGTATCTGCCAAGGTCTGTACCTCATAGTATAACTGCAGGTAGCTGGTTCAAGCCTTGCTCTATCTGTTCCCCATCAATTGGGACAATAGCAACTGGTCAAGGACTGAGTGCCTGCTTTtcttcatctctttctccccatGAGGGTTTTGCTCTTAGCTTGTTCTGCCACTCATCACCACCTCTGATTGCTTTCTCAGACTTTCCTTGAGATAAAGCAACACCGATAGCTGCCAGAGAGTGGCAAGTCCCCGACAGTCTCTGAGATACTTATttatacttaaaaaatatatatatatatttatgaagTACTGGGATATCATTTGTTTGTGTATTTGAATTCATTTGTTGTGTATGCAGGTATTTATTTGtaatgtatttatgtatttatactgtgtgtttgtttactgaTTGATACTGTCATTCCTAGAGTAATTTCCTGGTGGGTGTCAAGAGATTTGTACTGTATGTGGTTTGGCAGAGAggtcatattttttttatataccagGAGCTCCGATCTCCTTCcctttgttttatttattattatatatatttttacaggaCAATAGGAAGTTGGAATACATGTATAGAACAAACAGTGAGGAAGGGCTTTAGACGAACGGCCAAGTTGAGACTTGATCTCGTCGCCTTGGAGGCATGTGTGGTCTGGGAATCGAGTGTGTTACTGCTTGAACCAGACTCCGGCACGAGAGGGTTATTGGTCAATACAGTCACCCCTAGAGTCATTTCCTGGTAGGTGTGTCATTCCCTGTTTAAGAAGTTCCTATTCTAGTTTTTATTAACACAAGACAAGTGTGAGAAGTGTGAATTGATGTTAACTGACTGAGTGTTTTAGTCATCACTTATAGTGTCGTAAACATCACACTTGGTGAAAGAAAGCCTAGAAAGTTATCTATTTTTTTCATCTAACCCTGATGAACTATACTCTTCGCACTGAAGTATGTAAGACATTGAACATGTTCTAATGTGTGTAGTTTAAGAAGGTTGAATGGTACTTGTGACAACGTACTCTATTTAGATTTTAGACTGTAGGTCTAGTGTGTATCAATCATGTCCTTGTTTAAAATGGTGATGTCATCTTATTAACAAAGGTTTTGTTAGTAAACCCTATGGGAAAATTACTTTCTACAATTGTACTATACTTGATCAGTTACTTGCGTTGATCGGTtgattccatatatgttgcactaaagtgttttttttctccaacagTAATAAACCTTTAATGTGTAACAAGAAA

Function

NR:

description
uncharacterized protein LOC109898316

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0005576 extracellular region cellular_component
GO:0005125 cytokine activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938111.1 True 2355 mRNA 0.43 5 66674135 66678665

Neighbor

gene id symbol gene type direction distance location
LOC110538072 psd3 coding upstream 3320 66661875 ~ 66670815 (+)
LOC110538075 LOC106600854 coding upstream 20173 66644027 ~ 66653962 (+)
LOC110538073 LOC106600855 coding upstream 40621 66589702 ~ 66633514 (+)
LOC110538074 LOC106600856 coding upstream 113705 66544145 ~ 66560430 (+)
LOC110538943 NA coding upstream 147281 66505512 ~ 66526854 (+)
LOC110538082 LOC106600849 coding downstream 329348 67008013 ~ 67027138 (+)
LOC110538084 LOC106600841 coding downstream 470136 67148801 ~ 67164013 (+)
LOC118937895 NA coding downstream 602298 67280963 ~ 67292113 (+)
LOC110538094 NA coding downstream 802397 67481062 ~ 67491128 (+)
LOC110538945 LOC106607489 coding downstream 892559 67571224 ~ 67574023 (+)
G1101754 NA non-coding upstream 83198 66590178 ~ 66590937 (+)
G1101698 NA non-coding upstream 170342 66487046 ~ 66503793 (+)
G1101697 NA non-coding upstream 187263 66486582 ~ 66486872 (+)
G1101696 NA non-coding upstream 187600 66486050 ~ 66486535 (+)
rarab LOC106600859 non-coding upstream 188277 66302788 ~ 66485858 (+)
G1101805 NA non-coding downstream 45996 66724661 ~ 66822261 (+)
G1101907 NA non-coding downstream 187129 66865794 ~ 66866034 (+)
G1101908 NA non-coding downstream 189766 66868431 ~ 66868632 (+)
G1101909 NA non-coding downstream 191616 66870281 ~ 66870569 (+)
G1101922 NA non-coding downstream 213559 66892224 ~ 66892434 (+)
LOC110538063 abi1 other upstream 505938 66148710 ~ 66168256 (+)
G1100432 NA other upstream 1240678 65433140 ~ 65433457 (+)
si:dkey-110g7.8 LOC106600891 other upstream 2297921 64369958 ~ 64376356 (+)
G1097122 NA other upstream 2419071 64254612 ~ 64255064 (+)
G1102021 NA other downstream 380070 67058735 ~ 67059407 (+)
G1102115 NA other downstream 546687 67225352 ~ 67225799 (+)
LOC110538103 LOC106600823 other downstream 1126684 67793428 ~ 67810071 (+)
G1103416 eif1b other downstream 1309029 67987694 ~ 68048717 (+)

Expression


Co-expression Network