LOC110538082 (LOC106600849)


Basic Information

Item Value
gene id LOC110538082
gene name LOC106600849
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 67008013 ~ 67027138 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624657.2
gggggcgtcacaCGCATCCACAATCCAACCATTGTCGATGCAAACCGCAAATGAACGGTGGCGTTTTGACCCCCTTCATCGCTATGGGTTTTTCACAGCATCTCACGAGGAAACTTAGCCATTGACCTGACTGAGGGATGGAGTCCCTCTTTGGGGGCGAGCTGGGCCTCCTGGGCGGGGGCGAGGGGCTGAGGGATGACGGCTGCGGCTTGGGGTCGGGGGTCAACTGGTCGTCCTCACCCATCCAAGACGACATGTACCCCTCCCACTTCGCCCTGGCCGCCGCCTACCATGACATCAAGACGCGATTGGCCAGCCTGGAGCGAGAGAACAGCAGCATCAAGAGGAAGCTGAAGAACTATGAGGTCAAGttCCCTATGATCAGTGAGTTTGAGGAGGAGAGGACCCTACAGTGCTGCTCCTGTGAACCTAAGGAGACCTGCCTACTGCAGTCAGAGACCACCAACCTGCAACAGAGAGTCAACTCACTCACACAGGAGCTCCAGAAGAGtaaagagcgagaggagagactCGAGGATGTGATTCAGGCCTATGAGAAGATCCACATGGAGAAGAGTAATGTTCAGAGAGACCTGGACAAGATGACAACACTAGCAGAGCAGCACATGGAGCGTATCTGTGGTCTGGAGTCAGCTCTGAGGCAGAGGGAGGGGTCCCTGCAGAAACTCAGTGCTCAGCTGCACAGCAAGAACATTCATTACCTACAGCTACACACCAGTCTGGACGTGCCTCGTGAGCGGAACGGGCGGGGTCCCACCCTGCAGAGCTCTCGTAGTCTGGACGCCGTGTCCGACCTGAAGCTGCAGCGGTTGGAGGCGGAGCTAGAAGGGGCGCGGCAGCAGGCCCAGGGGGCGTGTCAGAGAGAGACGGAAATGAAGGAGGAGCTACAGAGGCTGCAGACAGAGATCAGACAGCTGCAGCAGGATGTACAGACACAGCAGGAGGTGACCACACTCTGTGAGCACTGTGATGTGGAGTGGATAAAGAAGGCAGGAGATGAACAGGTGAACCTGGCGTTGGCCTACACTGAGCTGACCGAGGAGCTGGGTCGTGTGAGAGGTCTGGCTGTCAAACAGACTGAGATCCTCAGGAAGGCATCCCACGAGCAAATGGtcctaagaCACTCCCCAGCCCCCCAGCGTCGCTCCCCAGCCTCCCAACGCCCCTCCCCAGACCGcctccaccctctcccctctccctctcctcccctctcaccttCCTCATCCCCTTCTTGCCCCGCTTCCTACTCCCCCACTGGCCTCTCTTACTCCCCCACCGGCCCAGCCTCCTACTCCTGCCGTCCAACCAGCCAGCGGTTGCGTGCCCGCTTCCAGGGGCGCCGCAGCTACTCGGAGGTGGCCGACTCGTCTGCCCACCAGAGGCCCCCACCCAGGCTGCTCCGTGACCCAGTCTCCACCCTGCCCAAGCCCAGGAACATGGGGGAGTCTGGGGCCTACTCCCGTCGGCCGGCCTCGGCCCGTGGCGCTgtaggaggtggtggtggagggggaagCAGCCTGAGCAGTAGTCCCCATCACCATGACCTGGAGCAGGGCTTCCTTCTAGATGCAGAGGGGTGCCACTTCTGTCATCTGGAGGATTCCCCGGCCCCCACTCCACTGGTCACCCCACCCCAGTCGTCTGATGATGAGGAAGAGTGGAGATGCCCATCCCCGGTGGCCAGTCCTCCCAGGACACTGGGGGTCATGGGGGTAAGCTCACGGGAACCCCCTCCCTGCCCCTCCTTCTTGGCCCCAAATGGCCCAGCTACTCTCACCTGCCACCTGCCAGGGTACGTGGATGCAGACCACGCCCAGTCCTGGCCCTCCATCAATTTGTGGATGGAGACGGAGGAGAACGACACCCGGAGCTGCCCGCTGTGTCAGCTGACCTTCCCCACCGGTTACCCTGACGACGCCCTCATCAAACACATCGACACACACCTGGAGAACAGCAAGATCTAACCGTTGCCCCCAGACACAGATCTAGGAACAACTTACCCTGCCAAATTCAAACCTAAACCATTACCAggaaaacacaaaactgaccttaGTGTCCAGAGGCGAATTCGTCCTACTCCAGTCTGCTTCGCGTCATGACTCTACCTGCTGTAAAATACAGGATTCACGATGGGCTCACCCttaataaaagtgacagcaccACAATTGCGGATCCCCTTGGCAATATGGCACTCGAGAGGAACAGactccatctaactgtagagagGTGATACTGTCAAGCCTCTAGTCGTTTTCTAAACTGGAAAGTTTCCTTACCTCTGGTTTTTGACCATGTTAGTTTAGGGCTATAACAAGGGCCAGTGCTGTTTCTGAATGCTCCCTCTCTCGCCCATGTTATCAGGTATGGTCTTTGACATGGTTACCTCGCACTGTTTTTAAACGCCATCAGTAAAATGGGTCACACCCCTAACTACATGCTTCATCATAAAGTTGACTCTCCGTCAAACCAGAAGGAAGTCTTTGCCCAGACTTTAAGGGCACATTCATAGCTGGAGGTACACAGCACTTTTTTTGGAATTTAGTTCAAATGGAAAGAAGAATTTTCTTGAATCTTGATGAAAACCGATCTTTAAATGAATGAATAACAGTATCTCACGTGTCTTCATATAATTCAATGAAACAAGTCAAGGATGACTGAGGGGTTGGCGATAATCGCTATAAATGGTTGAGCTATGGCGGGATGTCAAGGACCCTGAAAACAGGGATGGACCACTATAGGTAACTCATAAGAAATTCCTTTGTATATTGACATTCAGGGATTCAGGACATTGTACAACAGTGATTAAAACTAGGGTAAATAACAGGCCGAAGATGTTCTGGTTTGCAGGAGCTGTACAGTGAATCCAGGCTGTTGTTCTCCATGGATGATTTGTGAATCTCAGAATACTGAAGCTTTATATGCAGTCATCTCCAGTACTTGCCTACAGGTTGTCAATACAATTAACAGCAACCCATTTAAAACCCAAAGGGGGGAGGAGTTTTCCAGATCTAGAACATCAGCTGATTTCTCAACTCAGCCTATTGTGAAATTTGCACAGCAATCAATATGATCCGAATACACTGGATGGGGATCTACCATCAGTATGTTGTCTTACGTCAGTTCAGTCGGCACTGATCAGTCGATCGAGGGACGAGCGTCGCGCAGGGTTTACACCACCAGTCGGAAGACAAAACGCCATTAGTATAGATACCATAGAAGGTAACACTGCAATCAACCACAAAAATGCGGGATCGCTTCTGGAGGAACAACCAAGACACTGCCAATGAGAGAACAGTACGGCGCTACAGGAATCAGCGATCAAAAGGAAATTACATTTGAAAATAGACATGAACCCACGTGCTCACATTGCATTCCAACACACTACAGTATTCCATTTCTGAATATTTTCTTCCTTCAGTAGAATCACGAGGCTTAGTTTACCCTTTATAGTCATCTTTCGGTTTTCTGTAACGCAAATAATAAAAACCTAAATCTCAAAATGATATAACTGGTTGAACTTCAGCTCATCCCAGTCTTCAATGACTAGTCTTAAACAGCAACTGGTTGGACTGGGTTCCACGCTTCGATTCAATTCATTAGACGTCAACTCATAAGGGAACATGTTGTACACCCATAGGCATTTTACATTCCCTGCATTGGGAAATAGTTAAAAGAGATCCTTCCAGTTAAACAACTGCTTACAATAGCCACAAGACGTTGCAGTGTCAAAGAAAACCAAAATCGTTTTAAGTTCCGTATTTATTTGAAAATAGACTAGAAAACAATTCATTTGGGATGATcgatgatcccccccccccccccccccccccccccgctataGCCCTCCCAATTGTTTTTACACTGAAATGTAACAATGGTTCTCTTTTCCGTAAAACCCACTGTTGAAacatacataaaaaaaacactttatagtATCAACCTAAATCAAGGTTGAAAAGATCACCCTAAAAAGCATTAAACATCTATAAACTCACTCTAGATAAATACAAAAAACTAAGGAAAGCAGTGAAAGTGTTATATAGGTCACTGTTCTTTAAAACGGGTGAGGAAGGAGACAGACGTGAGG
>XM_021624658.2
gggggcgtcacaCGCATCCACAATCCAACCATTGTCGATGCAAACCGCAAATGAACGGTGGCGTTTTGACCCCCTTCATCGCTATGGGTTTTTCACAGCATCTCACGAGGAAACTTAGCCATTGACCTGACTGAGGGATGGAGTCCCTCTTTGGGGGCGAGCTGGGCCTCCTGGGCGGGGGCGAGGGGCTGAGGGATGACGGCTGCGGCTTGGGGTCGGGGGTCAACTGGTCGTCCTCACCCATCCAAGACGACATGTACCCCTCCCACTTCGCCCTGGCCGCCGCCTACCATGACATCAAGACGCGATTGGCCAGCCTGGAGCGAGAGAACAGCAGCATCAAGAGGAAGCTGAAGAACTATGAGGTCAAGttCCCTATGATCAGTGAGTTTGAGGAGGAGAGGACCCTACAGTGCTGCTCCTGTGAACCTAAGGAGACCTGCCTACTGCAGTCAGAGACCACCAACCTGCAACAGAGAGTCAACTCACTCACACAGGAGCTCCAGAAGAGtaaagagcgagaggagagactCGAGGATGTGATTCAGGCCTATGAGAAGATCCACATGGAGAAGAGTAATGTTCAGAGAGACCTGGACAAGATGACAACACTAGCAGAGCAGCACATGGAGCGTATCTGTGGTCTGGAGTCAGCTCTGAGGCAGAGGGAGGGGTCCCTGCAGAAACTCAGTGCTCAGCTGCACAGCAAGAACATTCATTACCTACAGCTACACACCAGTCTGGACGTGCCTCGTGAGCGGAACGGGCGGGGTCCCACCCTGCAGAGCTCTCGTAGTCTGGACGCCGTGTCCGACCTGAAGCTGCAGCGGTTGGAGGCGGAGCTAGAAGGGGCGCGGCAGCAGGCCCAGGGGGCGTGTCAGAGAGAGACGGAAATGAAGGAGGAGCTACAGAGGCTGCAGACAGAGATCAGACAGCTGCAGCAGGATGTACAGACACAGGAGGTGACCACACTCTGTGAGCACTGTGATGTGGAGTGGATAAAGAAGGCAGGAGATGAACAGGTGAACCTGGCGTTGGCCTACACTGAGCTGACCGAGGAGCTGGGTCGTGTGAGAGGTCTGGCTGTCAAACAGACTGAGATCCTCAGGAAGGCATCCCACGAGCAAATGGtcctaagaCACTCCCCAGCCCCCCAGCGTCGCTCCCCAGCCTCCCAACGCCCCTCCCCAGACCGcctccaccctctcccctctccctctcctcccctctcaccttCCTCATCCCCTTCTTGCCCCGCTTCCTACTCCCCCACTGGCCTCTCTTACTCCCCCACCGGCCCAGCCTCCTACTCCTGCCGTCCAACCAGCCAGCGGTTGCGTGCCCGCTTCCAGGGGCGCCGCAGCTACTCGGAGGTGGCCGACTCGTCTGCCCACCAGAGGCCCCCACCCAGGCTGCTCCGTGACCCAGTCTCCACCCTGCCCAAGCCCAGGAACATGGGGGAGTCTGGGGCCTACTCCCGTCGGCCGGCCTCGGCCCGTGGCGCTgtaggaggtggtggtggagggggaagCAGCCTGAGCAGTAGTCCCCATCACCATGACCTGGAGCAGGGCTTCCTTCTAGATGCAGAGGGGTGCCACTTCTGTCATCTGGAGGATTCCCCGGCCCCCACTCCACTGGTCACCCCACCCCAGTCGTCTGATGATGAGGAAGAGTGGAGATGCCCATCCCCGGTGGCCAGTCCTCCCAGGACACTGGGGGTCATGGGGGTAAGCTCACGGGAACCCCCTCCCTGCCCCTCCTTCTTGGCCCCAAATGGCCCAGCTACTCTCACCTGCCACCTGCCAGGGTACGTGGATGCAGACCACGCCCAGTCCTGGCCCTCCATCAATTTGTGGATGGAGACGGAGGAGAACGACACCCGGAGCTGCCCGCTGTGTCAGCTGACCTTCCCCACCGGTTACCCTGACGACGCCCTCATCAAACACATCGACACACACCTGGAGAACAGCAAGATCTAACCGTTGCCCCCAGACACAGATCTAGGAACAACTTACCCTGCCAAATTCAAACCTAAACCATTACCAggaaaacacaaaactgaccttaGTGTCCAGAGGCGAATTCGTCCTACTCCAGTCTGCTTCGCGTCATGACTCTACCTGCTGTAAAATACAGGATTCACGATGGGCTCACCCttaataaaagtgacagcaccACAATTGCGGATCCCCTTGGCAATATGGCACTCGAGAGGAACAGactccatctaactgtagagagGTGATACTGTCAAGCCTCTAGTCGTTTTCTAAACTGGAAAGTTTCCTTACCTCTGGTTTTTGACCATGTTAGTTTAGGGCTATAACAAGGGCCAGTGCTGTTTCTGAATGCTCCCTCTCTCGCCCATGTTATCAGGTATGGTCTTTGACATGGTTACCTCGCACTGTTTTTAAACGCCATCAGTAAAATGGGTCACACCCCTAACTACATGCTTCATCATAAAGTTGACTCTCCGTCAAACCAGAAGGAAGTCTTTGCCCAGACTTTAAGGGCACATTCATAGCTGGAGGTACACAGCACTTTTTTTGGAATTTAGTTCAAATGGAAAGAAGAATTTTCTTGAATCTTGATGAAAACCGATCTTTAAATGAATGAATAACAGTATCTCACGTGTCTTCATATAATTCAATGAAACAAGTCAAGGATGACTGAGGGGTTGGCGATAATCGCTATAAATGGTTGAGCTATGGCGGGATGTCAAGGACCCTGAAAACAGGGATGGACCACTATAGGTAACTCATAAGAAATTCCTTTGTATATTGACATTCAGGGATTCAGGACATTGTACAACAGTGATTAAAACTAGGGTAAATAACAGGCCGAAGATGTTCTGGTTTGCAGGAGCTGTACAGTGAATCCAGGCTGTTGTTCTCCATGGATGATTTGTGAATCTCAGAATACTGAAGCTTTATATGCAGTCATCTCCAGTACTTGCCTACAGGTTGTCAATACAATTAACAGCAACCCATTTAAAACCCAAAGGGGGGAGGAGTTTTCCAGATCTAGAACATCAGCTGATTTCTCAACTCAGCCTATTGTGAAATTTGCACAGCAATCAATATGATCCGAATACACTGGATGGGGATCTACCATCAGTATGTTGTCTTACGTCAGTTCAGTCGGCACTGATCAGTCGATCGAGGGACGAGCGTCGCGCAGGGTTTACACCACCAGTCGGAAGACAAAACGCCATTAGTATAGATACCATAGAAGGTAACACTGCAATCAACCACAAAAATGCGGGATCGCTTCTGGAGGAACAACCAAGACACTGCCAATGAGAGAACAGTACGGCGCTACAGGAATCAGCGATCAAAAGGAAATTACATTTGAAAATAGACATGAACCCACGTGCTCACATTGCATTCCAACACACTACAGTATTCCATTTCTGAATATTTTCTTCCTTCAGTAGAATCACGAGGCTTAGTTTACCCTTTATAGTCATCTTTCGGTTTTCTGTAACGCAAATAATAAAAACCTAAATCTCAAAATGATATAACTGGTTGAACTTCAGCTCATCCCAGTCTTCAATGACTAGTCTTAAACAGCAACTGGTTGGACTGGGTTCCACGCTTCGATTCAATTCATTAGACGTCAACTCATAAGGGAACATGTTGTACACCCATAGGCATTTTACATTCCCTGCATTGGGAAATAGTTAAAAGAGATCCTTCCAGTTAAACAACTGCTTACAATAGCCACAAGACGTTGCAGTGTCAAAGAAAACCAAAATCGTTTTAAGTTCCGTATTTATTTGAAAATAGACTAGAAAACAATTCATTTGGGATGATcgatgatcccccccccccccccccccccccccccgctataGCCCTCCCAATTGTTTTTACACTGAAATGTAACAATGGTTCTCTTTTCCGTAAAACCCACTGTTGAAacatacataaaaaaaacactttatagtATCAACCTAAATCAAGGTTGAAAAGATCACCCTAAAAAGCATTAAACATCTATAAACTCACTCTAGATAAATACAAAAAACTAAGGAAAGCAGTGAAAGTGTTATATAGGTCACTGTTCTTTAAAACGGGTGAGGAAGGAGACAGACGTGAGG

Function

NR:

description
TANK-binding kinase 1-binding protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624657.2 False 4108 mRNA 0.51 11 67008013 67027138
XM_021624658.2 True 4105 mRNA 0.51 11 67008013 67027138

Neighbor

gene id symbol gene type direction distance location
LOC110538077 LOC106600959 coding upstream 329348 66674135 ~ 66678665 (+)
LOC110538072 psd3 coding upstream 337198 66661875 ~ 66670815 (+)
LOC110538075 LOC106600854 coding upstream 354051 66644027 ~ 66653962 (+)
LOC110538073 LOC106600855 coding upstream 374499 66589702 ~ 66633514 (+)
LOC110538074 LOC106600856 coding upstream 447583 66544145 ~ 66560430 (+)
LOC110538084 LOC106600841 coding downstream 121663 67148801 ~ 67164013 (+)
LOC118937895 NA coding downstream 253825 67280963 ~ 67292113 (+)
LOC110538094 NA coding downstream 453924 67481062 ~ 67491128 (+)
LOC110538945 LOC106607489 coding downstream 544086 67571224 ~ 67574023 (+)
LOC110538098 LOC106607492 coding downstream 609986 67637124 ~ 67643446 (+)
G1101984 NA non-coding upstream 7010 66993317 ~ 67001003 (+)
G1101980 NA non-coding upstream 22369 66985277 ~ 66985644 (+)
G1101979 NA non-coding upstream 23009 66984180 ~ 66985004 (+)
G1101974 NA non-coding upstream 27855 66979929 ~ 66980158 (+)
G1101973 NA non-coding upstream 28669 66979116 ~ 66979344 (+)
G1102021 NA non-coding downstream 31907 67058735 ~ 67059407 (+)
G1102022 NA non-coding downstream 34524 67061662 ~ 67061889 (+)
G1102024 NA non-coding downstream 35753 67062891 ~ 67063127 (+)
G1102026 LOC106600846 non-coding downstream 37480 67064618 ~ 67071642 (+)
G1102043 NA non-coding downstream 65859 67092997 ~ 67093240 (+)
G1101805 NA other upstream 236622 66724661 ~ 66822261 (+)
LOC110538063 abi1 other upstream 839816 66148710 ~ 66168256 (+)
G1100432 NA other upstream 1574556 65433140 ~ 65433457 (+)
si:dkey-110g7.8 LOC106600891 other upstream 2631799 64369958 ~ 64376356 (+)
G1102115 NA other downstream 198214 67225352 ~ 67225799 (+)
LOC110538103 LOC106600823 other downstream 778211 67793428 ~ 67810071 (+)
G1103416 eif1b other downstream 960556 67987694 ~ 68048717 (+)
G1104149 LOC106600798 other downstream 1476903 68504041 ~ 68505295 (+)

Expression


Co-expression Network