LOC110538945 (LOC106607489)


Basic Information

Item Value
gene id LOC110538945
gene name LOC106607489
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 67571224 ~ 67574023 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625914.2
TCTATTTCGACATGGAAGCTTCTGTGACAGTAAGGAAAGGGAGGTCGATCTTAATTCTCCATAACAAAAGTACAAAGACTGGTCGGAGACCAAAGACAATTGAACACCTCCTTCCCTCCTTGCGCCCAGGCGGCGCCTTGGCAGTTAGACCGTGTCTCTCATTAGCAAAAGATGTCTCGACCAGGGAGATATAAACGctagaaagaaggagagaaggagggggattCAAACGGGGCGACAAAAACAACGAATCCCATCTATGTAAACGAATTTGGCTCAAGTCTGCAGACAGAGCGTCAGCAAGGCATGGAAAGAGACACCGATTTTGGATGATACAGTGGCGCACGCATTGGGAATCATTTGAATTTTAGGCGAACATTTTTAAAGGAGTAAACTTTGTTAATTAAACCTGAAGCCAGGACACAAATAAACTACAATAAACGACATTATGCTTGCAGAGGGCAGAGAAACGCCGGTCGCCACAGTGGTTGATACAAACAGTGGACATGGAGATGAGCCATGCCCGCGCAGCTCAGTCAATTTTATTGACCACAGTCGGCGACACCGTACTGCCTTTACCCGGGAACAACTGTCCCGCCTGGAGCAAGAGTACATCAAGGAGAGCTACGTTTCTCGACCGAGGAGATGCGAACTGGCGACAGCACTGAACCTCCCCGAGACCACAATCAAGGTATGGTTCCAAAACAGGCGAATGAAGGACAAGAGGCAGCGTCATTCTCTCAGCTGGCCACACCCCCTGGACCCCAACCTGTGTGCCCTGATGGTGAGCCAGGCTGCAGCAGGCTTACCttactcctttctctctcccctccccctgcacCTCTACTCTCACCACGGAGTGGGGGCAGGTGCCCCCTCTGTTCCCAGCCCCTTCGATGCTCCCCTCAGGCCACTGGATCCCCTGcgcctctctcactccccctaccCCAGGCCGGTTGGTATACCCCCAACGGTCCTCTACCCCCATTCCAATGTGATGCACCATCCCGCCACTTGCCCCTGCCCCCTCTGCCTCCACTGGGGATCAGACCAACTGTTTAAAGCCAGACGGCTGAGCGCTATCGGCCTGAATCGACCATGCAGTCCCAAAACTATGGCTGCCAGTCTGGACAGGAGGGAAGAGGTGCCTTTGCCCAGATGAAGTTTGCTGCAGTAGCTACCAGGAAATGATGATATGAAGTCAATGGTGGTGACAGTACATTGAGCACAATCACACCTCATGATCAGATAAACTGCCCTCCCTGGAGGAGTGCAATTTGATCCAGCTTTCCATGTTGTTAGAGCTCTAGATTTACATGCGTCTGTCTGTAATAACACAGCTGGGGATGTTAATACTGTTTTATTTATTCGTGTGAAATGCAACGTTCTTTCCAGATCAATGATCTTGAAACATTCCGGCCTTCACACATACGGTAGCTAATACTGGGGATGACCTTGAGGCAATAAGAAACGTTCCTTTTGTTGTAATTGCGTGTTATTATGTGCAAGAACGAGAAGTTTCATTCTAACTGGTGATTCACTAAAAGGCAGAGGAGTTCCATTAGTAGAATGTCCAATTAGACATTGAAGGTAAaacaatatatttaaaaaaccCAGACATTTTCTAGTCCATAGAAATTCACATATTTCACTGTTTGCTCTGATAATCAAGTATGAATCTCAACACATGAGAAATGGCTTTGCAGAAACTACTGTTGCTCATGTGTTCGTCTGATGTTTGCACTAGTCTATTATCTTGTCTAGAATTGAAGAGAATTGCATACAGTGCCAGAATATGTGAAGGCGCAAAGTGTAGATAAGATTTTCCTTTCCATCTTTCGGAATATGCGATGAAATATTTTAGTTAATACATATTTATGAGAAATCTCTGGTTCAATATTTTAAAGAACAAATTGTGATTGAGTACACTCGTTTGCATCAACAATGACATATATTACTCTGTCAAGCATACTTTTACAaagtaaattaaataaataaa

Function

NR:

description
homeobox protein XHOX-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625914.2 True 1999 mRNA 0.46 3 67571224 67574023

Neighbor

gene id symbol gene type direction distance location
LOC110538094 NA coding upstream 80096 67481062 ~ 67491128 (+)
LOC118937895 NA coding upstream 279111 67280963 ~ 67292113 (+)
LOC110538084 LOC106600841 coding upstream 407211 67148801 ~ 67164013 (+)
LOC110538082 LOC106600849 coding upstream 544086 67008013 ~ 67027138 (+)
LOC110538077 LOC106600959 coding upstream 892559 66674135 ~ 66678665 (+)
LOC110538098 LOC106607492 coding downstream 63101 67637124 ~ 67643446 (+)
LOC110538099 ube2z coding downstream 73930 67647953 ~ 67672094 (+)
LOC110538100 LOC106600828 coding downstream 114961 67688984 ~ 67748718 (+)
LOC110538101 LOC106600827 coding downstream 178675 67752698 ~ 67757798 (+)
LOC110538104 LOC106600824 coding downstream 211674 67785697 ~ 67793089 (+)
G1103087 NA non-coding upstream 6146 67564857 ~ 67565078 (+)
G1103074 NA non-coding upstream 12254 67558725 ~ 67558970 (+)
G1102984 NA non-coding upstream 68256 67497753 ~ 67502968 (+)
G1102961 NA non-coding upstream 75756 67495093 ~ 67495468 (+)
G1102960 NA non-coding upstream 78211 67492609 ~ 67493013 (+)
G1103097 NA non-coding downstream 108 67574131 ~ 67574336 (+)
G1103099 NA non-coding downstream 1227 67575250 ~ 67575572 (+)
G1103100 NA non-coding downstream 1854 67575877 ~ 67576185 (+)
G1103109 NA non-coding downstream 7365 67581388 ~ 67581676 (+)
G1103122 NA non-coding downstream 14901 67588924 ~ 67589154 (+)
G1102115 NA other upstream 345425 67225352 ~ 67225799 (+)
G1102021 NA other upstream 511817 67058735 ~ 67059407 (+)
G1101805 NA other upstream 799833 66724661 ~ 66822261 (+)
LOC110538072 psd3 other upstream 907767 66661875 ~ 66670815 (+)
LOC110538063 abi1 other upstream 1403027 66148710 ~ 66168256 (+)
LOC110538103 LOC106600823 other downstream 231326 67793428 ~ 67810071 (+)
G1103416 eif1b other downstream 413671 67987694 ~ 68048717 (+)
G1104149 LOC106600798 other downstream 930018 68504041 ~ 68505295 (+)
G1104162 NA other downstream 954258 68528281 ~ 68531861 (+)
LOC110538155 LOC106600992 other downstream 1741709 69315451 ~ 69321518 (+)

Expression


Co-expression Network