LOC110538098 (LOC106607492)


Basic Information

Item Value
gene id LOC110538098
gene name LOC106607492
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 67637124 ~ 67643446 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624686.2
TCACAGTCGAAGGAGGTTTCCTTTTGTCCAATGGACGTTTAGGACGTAGTAACTAAGATTATAAATGACAAGGTGACAGCTGTCAGAGTGCACATTGACTGCTGCTGTGAGCGAAAATTAGTAATCTAGGACCCCGTGTGTACTGTAACATTAAGGCACCAGCCATGTACGCCTGCGCTAAGTTTGTCACCTCACCTGCTGTGCTGCGTGGGGGGTCCAGAGTCCTCGCCCGGCCAGTCTCAGTCTTCAACAGACCTGAAGCCAGAAGTGAGCAGCAGACCCTGTTGCCTGTCAGTGAGGCTTCTCTTCTAACCCGGGGGTTCCAGACCAGCGCTATCTCCAGGGACATCGACACTGCCGCCAAGTTCATCGGTGCTGGAGCCGCCACAGTGGGTGTGGCGGGATCAGGGGCTGGAATTGGAACTGTGTTCGGTAGCTTGATCATCGGCTATGCCAGGAACCCCTCCCTGAAGCAGCAGCTCTTCTCGTACGCCATCCTGGGCTTTGCCCTGTCTGAGGCAATGGGGCTCTTCTGTCTCATGGTGGCGTTCCTCATCCTGTTCGCTATGTAATTTAGTCTCTCCCATCCCTGTCACCTCCCTTCTCCCAGGGAATTGGAACTCTTGATGCGACGCTCATGAGGCCGTGGCACCGCCATTCCAATCAAAATCTACGATTACAAATCCTGCCTTTTTATGTTCCCATTTTTTTTCAGAAGTTTTACGTAAGAGCTCGCTTTGATTTAGACTGTCTGTCTGAATAAATGGTTGGGATAACTATAAA

Function

NR:

description
ATP synthase F(0) complex subunit C3, mitochondrial-like

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008289 lipid binding molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02128 ATPeF0C, ATP5G, ATP9; F-type H+-transporting ATPase subunit c

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624686.2 True 783 mRNA 0.51 5 67637124 67643446

Neighbor

gene id symbol gene type direction distance location
LOC110538945 LOC106607489 coding upstream 63101 67571224 ~ 67574023 (+)
LOC110538094 NA coding upstream 145996 67481062 ~ 67491128 (+)
LOC118937895 NA coding upstream 345011 67280963 ~ 67292113 (+)
LOC110538084 LOC106600841 coding upstream 473111 67148801 ~ 67164013 (+)
LOC110538082 LOC106600849 coding upstream 609986 67008013 ~ 67027138 (+)
LOC110538099 ube2z coding downstream 4507 67647953 ~ 67672094 (+)
LOC110538100 LOC106600828 coding downstream 45538 67688984 ~ 67748718 (+)
LOC110538101 LOC106600827 coding downstream 109252 67752698 ~ 67757798 (+)
LOC110538104 LOC106600824 coding downstream 142251 67785697 ~ 67793089 (+)
LOC110538103 LOC106600823 coding downstream 149982 67793428 ~ 67810071 (+)
G1103122 NA non-coding upstream 47970 67588924 ~ 67589154 (+)
G1103109 NA non-coding upstream 55448 67581388 ~ 67581676 (+)
G1103100 NA non-coding upstream 60939 67575877 ~ 67576185 (+)
G1103099 NA non-coding upstream 61552 67575250 ~ 67575572 (+)
G1103097 NA non-coding upstream 62788 67574131 ~ 67574336 (+)
G1103172 NA non-coding downstream 33137 67676583 ~ 67687296 (+)
G1103312 NA non-coding downstream 115471 67758917 ~ 67759152 (+)
G1103331 NA non-coding downstream 128120 67771566 ~ 67771775 (+)
G1103333 NA non-coding downstream 130053 67773499 ~ 67773857 (+)
G1103334 NA non-coding downstream 130905 67774351 ~ 67774559 (+)
G1102115 NA other upstream 411325 67225352 ~ 67225799 (+)
G1102021 NA other upstream 577717 67058735 ~ 67059407 (+)
G1101805 NA other upstream 865733 66724661 ~ 66822261 (+)
LOC110538072 psd3 other upstream 973667 66661875 ~ 66670815 (+)
LOC110538063 abi1 other upstream 1468927 66148710 ~ 66168256 (+)
G1103416 eif1b other downstream 344248 67987694 ~ 68048717 (+)
G1104149 LOC106600798 other downstream 860595 68504041 ~ 68505295 (+)
G1104162 NA other downstream 884835 68528281 ~ 68531861 (+)
LOC110538155 LOC106600992 other downstream 1672286 69315451 ~ 69321518 (+)

Expression


Co-expression Network