Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110538117 |
| gene name | stx1b |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 68151328 ~ 68203022 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| stx1b | Predicted to enable SNAP receptor activity and SNARE binding activity. Involved in regulation of synaptic activity. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in presynaptic active zone membrane and synaptic vesicle. Predicted to be integral component of membrane. Is expressed in nervous system and trigeminal placode. Used to study epilepsy. Human ortholog(s) of this gene implicated in generalized epilepsy with febrile seizures plus 9. Orthologous to human STX1B (syntaxin 1B). |
| description |
|---|
| Syntaxin-1B |
| id | name | namespace |
|---|---|---|
| GO:0006886 | intracellular protein transport | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0005484 | SNAP receptor activity | molecular_function |
| id | description |
|---|---|
| K08486 | STX1B_2_3; syntaxin 1B/2/3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036938149.1 | True | 1210 | mRNA | 0.50 | 10 | 68151328 | 68203022 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| prf1.3 | LOC106600810 | coding | upstream | 4531 | 68142537 ~ 68146797 (+) |
| LOC110538111 | LOC106600814 | coding | upstream | 71159 | 68077590 ~ 68080169 (+) |
| LOC110538113 | LOC106600815 | coding | upstream | 80755 | 68065992 ~ 68070573 (+) |
| LOC110538112 | NA | coding | upstream | 89068 | 68057625 ~ 68062260 (+) |
| LOC110538110 | LOC106600816 | coding | upstream | 98469 | 68050305 ~ 68052859 (+) |
| LOC110538119 | LOC106600809 | coding | downstream | 41633 | 68244655 ~ 68257464 (+) |
| LOC110538121 | LOC106607507 | coding | downstream | 63674 | 68266696 ~ 68273592 (+) |
| LOC110538122 | utp18 | coding | downstream | 71884 | 68274906 ~ 68289864 (+) |
| LOC110538123 | LOC106600806 | coding | downstream | 89780 | 68292802 ~ 68308952 (+) |
| LOC110538125 | LOC106600803 | coding | downstream | 124238 | 68327260 ~ 68355287 (+) |
| G1103752 | NA | non-coding | upstream | 3916 | 68147208 ~ 68147412 (+) |
| G1103416 | eif1b | non-coding | upstream | 102611 | 67987694 ~ 68048717 (+) |
| G1103415 | NA | non-coding | upstream | 208074 | 67943052 ~ 67943254 (+) |
| G1103378 | NA | non-coding | upstream | 273332 | 67873781 ~ 67877996 (+) |
| G1103334 | NA | non-coding | upstream | 376769 | 67774351 ~ 67774559 (+) |
| G1103762 | NA | non-coding | downstream | 1026 | 68204048 ~ 68210597 (+) |
| G1103800 | NA | non-coding | downstream | 8687 | 68211709 ~ 68212001 (+) |
| G1103819 | LOC106600808 | non-coding | downstream | 17134 | 68220156 ~ 68222116 (+) |
| G1103801 | NA | non-coding | downstream | 33814 | 68236836 ~ 68266542 (+) |
| G1103912 | LOC106607511 | non-coding | downstream | 250320 | 68453342 ~ 68455172 (+) |
| LOC110538103 | LOC106600823 | other | upstream | 341265 | 67793428 ~ 67810071 (+) |
| G1102115 | NA | other | upstream | 925529 | 67225352 ~ 67225799 (+) |
| G1102021 | NA | other | upstream | 1091921 | 67058735 ~ 67059407 (+) |
| G1101805 | NA | other | upstream | 1379937 | 66724661 ~ 66822261 (+) |
| G1104149 | LOC106600798 | other | downstream | 301019 | 68504041 ~ 68505295 (+) |
| G1104162 | NA | other | downstream | 325259 | 68528281 ~ 68531861 (+) |
| LOC110538155 | LOC106600992 | other | downstream | 1112710 | 69315451 ~ 69321518 (+) |
| LOC110538173 | LOC106607273 | other | downstream | 1620193 | 69823215 ~ 69875030 (+) |
| G1105194 | NA | other | downstream | 1819686 | 70022708 ~ 70048987 (+) |
