XLOC_002927 (or109-13)


Basic Information

Item Value
gene id XLOC_002927
gene name or109-13
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36205211 ~ 36207737 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005411
GTAAGTTTAAAACTGGGCAATCTTCCTTAGGTTTATTCTGTGAGTAAACCAAATTGATCCTTCATTAACTGTATTATTATGTAACCCTTTGTTTCTGCTTTTCTGCAAAGACTGGATggaaaaaataatttgaaaatgaGTCAAGACGTGTCTGGAAACAAGAACATTTCCTTTCAGCCTGCTGCACACTCTGGTAACACAACTGCCAACTTGACCACTGCAAGTGTGACCTATTTTCGTCCTGCAACATTCTTCATCAGTGGCTTTTCTAATCTCCCACATGCAAAATACTACTATGTGTTCTTgtgttttgtttactttgtgaCTGTTTTAGGAAATTCATTTATCATGTGTGTAATTTATATGTCTCGCAGACTTCACACAGCCAAATACATTGCTGTTTTTCATCTGGCTTTTTCTGATCTGTGTGGAAGCACAGCTGTGATTCCAAAACTTATAGACATGTTTTTATTTGGTCACCAGGAGATTTCGTATGAAGCATGCTTGATCAATAtgttttttgtatttcatttaatGAATTTACAATCTATGTCGCTACTCGTCTTAGCCTATGACAGACTGGTTGCTATTTGTTTTCCTCTAAAGTACCATGCAATCATTACAAAAAAATCTGTATCACTCATCTTAGGCAACATGTGGCttttttctatctttctttttGCTACACTTGCAGGTTTAGTCAACAGACTGTCTTTTTGTAGATCGACTGTAGTCAGTAGCCATTTCTGTGATCACGGGCCTGTTATCAGCCTTTCCTGTAATAGTAATTTTATAAATTATCTCATGGCATATATTTCGTTTGGTCTTCTGATTTGCATGCCGATGCTACTAATAACCATCTCATATTGTTGTATTGCTGCGGCTTTATTTAAGATCGCTCATGGCGCTGATCGAATCAAAGCTATGAAAACGTGCACCTCGCATCTCATGTTAGTGGCAATTTTGTATCTCCCGATTTTAAGTTTAAATATAAAATCCATTGCAATATCTATTGATCTTAACTCTCGGATAATTAACAATTCTCTAACGCAAATACTACCACCTATGCTGAATCCCATTATATACACTCTAAAGACAGAAGAGGTCATGCAGGCCATAAAAGAAATGTACCGACGCCGTCGAAAGGTGAACACTATGATGGAACAAAATGtgaaacagagaaaataaatattatcatttcACATTTTGCTGTTGAATGAAATGTCATGTCCTTTGTTATGTATAAATATCTGACAGTCTAAAGTTTAATgattacaaacattcaaatgaatAGGATTGGCTGTTCAGACATGATAAAATAATTGTGCAAATTTCCTATGTTATTAGAATTGGCAGTGACATCacat

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-75 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000101588

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005411 True 1367 mRNA 0.35 2 36205211 36207737

Neighbor

gene id symbol gene type direction distance location
XLOC_002926 BX088524.4 coding downstream 41917 36163179 ~ 36163294 (-)
XLOC_002925 NA coding downstream 111678 35811752 ~ 36093533 (-)
XLOC_002924 ovca2 coding downstream 536627 35664129 ~ 35668584 (-)
XLOC_002923 NA coding downstream 550531 35650584 ~ 35654680 (-)
XLOC_002922 BX663516.3 coding downstream 584762 35620333 ~ 35620449 (-)
XLOC_002928 or109-11 coding upstream 4838 36212575 ~ 36214582 (-)
XLOC_002929 or109-7 coding upstream 9502 36217239 ~ 36220061 (-)
XLOC_002930 or109-6 coding upstream 13768 36221505 ~ 36223005 (-)
XLOC_002931 or109-5 coding upstream 16733 36224470 ~ 36225729 (-)
XLOC_002932 or109-4 coding upstream 22865 36230602 ~ 36231741 (-)
XLOC_002919 NA non-coding downstream 773556 35429504 ~ 35431655 (-)
XLOC_002939 NA non-coding upstream 257606 36465343 ~ 36469895 (-)
XLOC_002942 NA non-coding upstream 387643 36595380 ~ 36610901 (-)
XLOC_002944 NA non-coding upstream 434429 36642166 ~ 36650904 (-)
XLOC_002945 AL845435.1 non-coding upstream 446460 36654197 ~ 36662611 (-)
XLOC_002955 BX323076.2 non-coding upstream 833341 37041078 ~ 37042232 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_17318429_17320775 OR109-13 coding CI01000304 null 17318424 ~ 17320898 (-)