trnac-gca-6


Basic Information

Item Value
gene id trnac-gca-6
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 69109072 ~ 69109143 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnac-gca-6
gggggtatagctcagtggtagagcatttgactgcagatcaagaggtctcCGGTTCAAATCCGGATGCCCCCT

Function

NR:

description
cilia- and flagella-associated protein 157

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnac-gca-6 True 72 mRNA 0.53 1 69109072 69109143

Neighbor

gene id symbol gene type direction distance location
trnac-gca-5 NA coding upstream 7991 69101010 ~ 69101081 (+)
LOC110538140 LOC106600790 coding upstream 192682 68914297 ~ 68916390 (+)
LOC110538134 LOC106600795 coding upstream 314454 68788360 ~ 68795371 (+)
trnac-gca-3 NA coding upstream 337900 68771101 ~ 68771172 (+)
LOC110538131 LOC106600796 coding upstream 514457 68558900 ~ 68594615 (+)
LOC110538147 LOC107084780 coding downstream 57285 69166428 ~ 69168888 (+)
LOC110538148 NA coding downstream 62376 69171519 ~ 69175969 (+)
LOC110538150 LOC106600987 coding downstream 88523 69197666 ~ 69229200 (+)
LOC110538155 LOC106600992 coding downstream 206308 69315451 ~ 69321518 (+)
LOC110538157 LOC106600994 coding downstream 293850 69402993 ~ 69435277 (+)
G1104666 NA non-coding upstream 4895 69103884 ~ 69104177 (+)
G1104609 NA non-coding upstream 20735 69084363 ~ 69088337 (+)
G1104629 NA non-coding upstream 63023 69045620 ~ 69046049 (+)
G1104575 NA non-coding upstream 66426 69039005 ~ 69042646 (+)
G1104544 NA non-coding upstream 211873 68896893 ~ 68897199 (+)
G1104661 NA non-coding downstream 10730 69119873 ~ 69121421 (+)
G1104707 NA non-coding downstream 50136 69159279 ~ 69159501 (+)
G1104709 NA non-coding downstream 51308 69160451 ~ 69160718 (+)
G1104724 NA non-coding downstream 79427 69188570 ~ 69188771 (+)
G1104162 NA other upstream 577211 68528281 ~ 68531861 (+)
G1104149 LOC106600798 other upstream 603777 68504041 ~ 68505295 (+)
G1103416 eif1b other upstream 1100595 67987694 ~ 68048717 (+)
LOC110538103 LOC106600823 other upstream 1299009 67793428 ~ 67810071 (+)
G1102115 NA other upstream 1883273 67225352 ~ 67225799 (+)
LOC110538173 LOC106607273 other downstream 714072 69823215 ~ 69875030 (+)
G1105194 NA other downstream 913565 70022708 ~ 70048987 (+)
G1105281 NA other downstream 1053546 70162689 ~ 70194672 (+)
G1105357 NA other downstream 1215815 70324958 ~ 70327126 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) trnac-gca_32 NA coding NC_053128.1 CM020925.1 19517235 ~ 19517306 (+)
striped catfish (Pangasianodon hypophthalmus) trnac-gca_5 NA non-coding NC_047603.1 CM018549.1 3254552 ~ 3254623 (+)
tiger barb (Puntius tetrazona) trnak-cuu_6 NA non-coding NC_056703.1 CM032072.1 24926980 ~ 24927051 (-)
mexican tetra (Astyanax mexicanus) trnac-gca_5 NA coding NC_035898.1 CM008301.1 4395893 ~ 4395964 (-)