LOC110538952 (LOC106600990)


Basic Information

Item Value
gene id LOC110538952
gene name LOC106600990
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 69261237 ~ 69279402 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938214.1
GTCTACATTTGTGCATCACCTACGCTCGACGTCCGTTTCCATTGAGGGGTCCTACATGTGCATGGTTTGGAAACAGAAGAGAAAACATTGTGAATAGTTCAAATAATTAGGAAAATAGTGATACAAATTTGAAACTACCGCTCTTTTTGCACATCAAGTCCCTTTCACAATGGAGACGGATCTGTATGACGAGTTTGGGAACTACATTGGTCCAGAACTAGACTCTGACGAGGATGATGATCTGGAGACAGACGACAGAGATGCGGATGAGgctgatgaggatgaggatgatgagCCGGCTGATGCTGATGAAGATGTCCCAGGAATGGAGGTAGTTCTGCACGAGGATAAGAAATACTATCCTACAGCAGAGGAAGTGTACGGGCCGGAGGTGGAAACTTTAGTCCAGGAAGAGGACGCACAGCCCCTCACAGAACCCATCATCAAGCCTGTAAGAAACAAGCAGTTCACTCTGATGGAACAGGAGCTACCTTCCACTGTTTATGACATGGAGTTCCTGGCTGACCTAATGGACAGTCCCGAGCTGATCCGTAACGTCACCCTGTGTGGCCACCTGCACCACGGCAAGACGTGTTTCGTGGACTGCCTGATTGAACAGACACACCCAGAGATCAGGAAGAGAGATGACATGGATCTCCGTTACACAGATATCCTGTTCACTGAGCAGGAGCGAGGAGTTGGTATCAAGAGCACCCCTGTCACAATGGTTCTTCCAGACTCCAGAGGCAAATCCTTCCTCTTCAACATCATGGACACACCAGGCCACGTCAACTTTTCGGATGAGGTGACATCAGGCATCCGACTCTCCGACGGCATCGTGCTTTTCATCGACGCAGCAGAAGGGGTGATGTTAAACACAGAGCGTCTGATCAAGCACGCAGTCCAGGAGCGTCTGGCCATCACCATCTGCATCAATAAGGTGGACCGCCTCATCGTGGAGCTCAAGCTGCCCCCTACAGACGCCTACTACAAACTACGCCACATAGTGGACGAGGTCAACGCCATGCTCAGCACCTACTCTACAGACGAGAACCTGGTGGTGTCTCCTCTCCTGGGGAACGTGTGTTTCGCCAGCTCTCAGTACTGTGTTTGCTTCACCCTGGGCTCCTTCGCCAAGATCTACTCTGACACCTACGGGGACATCAACTACACAGAGTTTGCCAAGAGGCTGTGGGGAGACATTTATTTCAACCCCAAAACGCGCAGGTTCACTAAGAAAGCCCCCACCAGTAACTCCCAGCGTAGCTTTGTGGAGTTTGTGTTGGAGCCTCTGTACAAGATCCTATCTCAGgTGGTGGGTGACTGTGACACGTCTCTGCCTCGGGTGCTGGATGAGTTGGGGATCCACCTGGTCAAAGAGGAGCTGAAGCTCAACATCAGACCTCTACTCAGGCTGGTCTGTAAGCGCTTCTTCGGAGAGTTCACTGGCTTTGTGGACATGTGCGTGCAGCACATCCCCTCACCACAGGGTGGTGCCAAGAGCAAGATAGAGCACAGCTACACTGGAGGACTGGACTCAGACCTGGGGGAGGCCATGGCAGAATGCGACCCTGATGGTCCTCTGATGTGCCACACCACTAAGATGTACAGTACTGAGGACGGGGTGCAGTTCCACGCGTTCGGCCGGGTGCTGAGCGGTACCATCCAGGCGGGCCAGCCAGTCAAGGTGCTGGGCGAGAACTACACTCTGGAGGACGAGGAGGACTCGCAGGTCTGCACGGTGGGACGCCTCTGGATCAACGTCGCCAGGTACCAGATAGAGGTGAACCGTGTGCCTGCTGGCAACTGGGTTCTCATTGAGGGCTGTGACCAGCCCATCGTCAAGACAGCCACCATCACCGAGCCCAGAGGGAACGAGGAAGCCCAGATCTTCCGTCCGCTCAAGTTCAACACGGCGTCTGTCATCAAGATCGCTGTGGAGCCAGTCAACCCGTCAGAGCTGCCCAAGATGTTGGACGGACTGCGGAAGGTCAATAAGAGCTACCCCTCCCTCACCACCAAGGTGGAGGAGTCAGGGGAACATGTTATCCTGGGGACTGGGGAACTCTACCTGGACTGTGTCATGCACGACCTGCGGAAGATGTACTCTGAGATCGACATCAAGGTGGCTGACCCCGTGGTGACCTTCTGTGAGACGGTAGTGGAGACGTCGTCTCTCAAGTGCTTTGCCGAGACGCCGAACAAGAAGAATAAGATCACCATGATTGCCGAGCCTCTGGAGAAGGGCCTGGCTGAGGACATAGAGAACGAGGTGGTGCAGATCACATGGAACAGGAAGAAGCTGGGAGAGTTTTTCCAGACCAAGTATGACTGGGATCTGCTGGCTGCCAGGTCTATCTGGGCCTTTGGGCCCGACACCACCGGGCCTAACATCCTGGTAGATGACACCCTGCCTTCTGAGGTGGACAAGGCTCTGCTGGGCTCGGTTAAGGACAGCATCATCCAGGGCTTCCAGTGGGGCACCAGGGAGGGGCCTCTGTGTGACGAACCTATCAGAAACGTGAAGTTTAAGATCCTGGATGCGGTCATAGCGCAGGAGCCtctacacagaggaggaggacaggtcATCCCCACAGCCAGGAGAGTGGTGTACTCTGCCTTCCTCATGGCCACCCCCAGGTTGATGGAGCCCTATTACTTTGTCGAGGTCCAGGCCCCAGCTGACTGTGTGTCTGCTGTGTACACAGTACTGGCCAGACGGAGAGGTCATGTGACCCAGGACGCCCCCATCCCCGGGTCTCCCCTCTACACCATCAAGGCCTTCATCCCAGCCATCGACTCGTTTGGCTTCGAGACGgacctgagaacacacacacagggccaggcCTTCTCCCTGTCCGTCTTCCACCACTGGCAGatTGTCCCTGGTGACCCCCTGGACAAGAGCATTGTGATCAGGCCGCTGGAGCCCCAGCCTGCCCCTCACCTGGCAAGAGAGTTCATGATCAAGACCCGTCGGCGCAAGGGTCTGAGTGAGGATGTGAGCATCAGCAAGTTCTTTGACGACCCTATGTTGTTGGAGCTGGCCAAGCAGGACGTGGTGCTCAACTACCCCATGTGAGGTGTCAGGAGACGGGGAGACAACGACCGGAGTGCTACcctccaccaccagcaccacaaccaacatcaccacaccacactgtatAAACCCCACTGAGGTGGGTGGACATTGTCACAGAGGGAAGCGGAGTCTGCCAGTTTTGTTTCCTGCTTTCATATTGGTGATTTATGTGGACTTTGTTAACCACTTACCCCCATCAATGACTTAAGTTAATCAATGAAGCACTGATATGGAACCCAACAGACCCTGCAATCTCCTGTTAAGACTTTGGCCACCCGTGCTCTCCTTGTAGGAGGGACTGTTATTATGATAGAATTGCGTCTACAGTTGTAGGGGCTGGCGGGATAGCAACATCTCTGACACCTCTCGTCATCAGCGCAATGAATAATACTGCCGAGGTGTTTCCCCTCAACAATGTCTTTGTTTATTTTTTGACATGTATAAATTCCCAAATGTTTTGTCGATGGAAGATGACTTGAAAGCAGgcttgattgtttttatttttttttgtgaaattgGATATCTTGCGTCTGTttttagtaaaaaataaatatgctTGTAAAATCA

Function

NR:

description
116 kDa U5 small nuclear ribonucleoprotein component-like

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K12852 EFTUD2; 116 kDa U5 small nuclear ribonucleoprotein component

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938214.1 True 3649 mRNA 0.53 26 69261237 69279402
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110538149 LOC106607256 coding downstream 3025 69221551 ~ 69258212 (-)
LOC110538146 LOC106607253 coding downstream 103294 69119512 ~ 69157943 (-)
LOC110538145 LOC106600984 coding downstream 146530 69110459 ~ 69114707 (-)
LOC110538142 LOC106601046 coding downstream 161129 69081658 ~ 69100108 (-)
LOC110538141 LOC106600981 coding downstream 180918 69038972 ~ 69080319 (-)
LOC110538152 phop1 coding upstream 2503 69281905 ~ 69285387 (-)
LOC110538153 LOC106607259 coding upstream 10085 69289487 ~ 69309524 (-)
LOC110538154 phb coding upstream 31094 69310496 ~ 69314044 (-)
LOC110538156 LOC106600993 coding upstream 42250 69321652 ~ 69363874 (-)
LOC110538158 LOC106607264 coding upstream 226490 69505892 ~ 69557519 (-)
G1106517 NA non-coding downstream 6574 69254427 ~ 69254663 (-)
G1106515 NA non-coding downstream 10812 69250066 ~ 69250425 (-)
G1106501 NA non-coding downstream 33508 69227496 ~ 69227729 (-)
G1106492 NA non-coding downstream 67387 69193416 ~ 69193850 (-)
G1106489 NA non-coding downstream 69830 69190474 ~ 69191407 (-)
G1106562 NA non-coding upstream 100822 69380224 ~ 69384008 (-)
G1106577 NA non-coding upstream 124225 69403627 ~ 69452594 (-)
G1106611 NA non-coding upstream 180357 69459759 ~ 69459968 (-)
G1106635 NA non-coding upstream 218037 69497439 ~ 69497653 (-)
G1106463 rl19 other downstream 92349 69166461 ~ 69168888 (-)
LOC110538128 LOC106600798 other downstream 757331 68495125 ~ 68517925 (-)
LOC110538106 wipf2 other downstream 1395595 67860396 ~ 67867954 (-)
G1103529 NA other downstream 1405229 67853833 ~ 67856008 (-)
LOC110538092 hoxb6aa other downstream 1772495 67486521 ~ 67489383 (-)
G1106634 NA other upstream 217238 69496640 ~ 69496962 (-)
G1107004 NA other upstream 957692 70237094 ~ 70237601 (-)
LOC110538202 LOC106601032 other upstream 1480513 70752569 ~ 70775014 (-)
G1107481 NA other upstream 1865253 71144655 ~ 71147165 (-)
G1107536 NA other upstream 2032857 71312259 ~ 71313001 (-)

Expression

LOC110538952(LOC106600990) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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LOC110538952(LOC106600990) Expression in each Bioproject

Bar chart with 21 bars.
LOC110538952(LOC106600990) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network