LOC110538164 (LOC106601000)


Basic Information

Item Value
gene id LOC110538164
gene name LOC106601000
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 69651548 ~ 69654168 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624798.2
AGACGGGCATGGTCCCAGACACAAACATCAGAGACCACCagaccatcaccatcaccacagaggcaagagagaggagagagctgccTGAACCGTCACAGATTACCTTGGCtagcaacaacagacagacagatagtccCAGAGAGAAGAACACCGAACACAGAGAtaccaagacagacagagagaggagtctgAGAAACTAACAGAGGTGATAAATCCGAGATAAGGACAGAACTTCACCCACACGGAACCGTGATAATGCAGGTGTGTACTGTTATTGAGAAGCGTGCTGGGGCCGTGGTGGGGGCTGAGCTGGCCTGCAGCGTACGGGAGGAGAACCAGGCTCAGAGGGAGAGCTACAAAGCCGACTGGAACAGCGTTAACATGAAGACCCGGGCCATGGACAGGCAGACAATGAACATGAACGATGACTCTCGTCGGGAGACCTACACTCGTCGGTGGGAGGCTCGCTCTCTGGCCCAGGCCTGTCCCTCAGGGGTATACAGAGTGGGCACCGTGGAGAGGGGTGTGAGGGAGCACCAGCTCCTGCCCAAGAGGAACACCCTGCCCCTGCCCATCTTCACCCCTGCACAGCTGGGCATCCGGCTGGGCCGCGGAGCACCACACACCCAGGAGGACCTCCGTCCCTTCTCCGTCCCCGACGGTGCCTGCCCTGGCAAGAGGGCCGTAGTCGAGATCACACAGGACCTGCCCCCCGCCAAGCCACTCAGGATGGAGTTCGCCAAGGCGCCCAAAGCACTGGGCCGCTCCGTGTCACAGGAGGTCCAGAGAgggtgaaggaagaggagaggaagaggaagattgGATGTTAGGGAGAAAGGTTCCTTGTGGGGCTCAGCCCATCAGATAACAGCATGGAGGGATGTATATAGATTTATTCCTAGTGACATGTATTCCATCCCTATTCCCTAGTAGAGCCGTCACACAGTGCATACCTTTCCTGTTTCATTACTGTAGGTATTGCATGTCCAATGTCGCACTGTTTGTTATACAAGGTATTATTCGCTTAGAGATCTGATGGCATCTTTTGATTGACAGAAAGGCAGACAAATGCTCTGTTCTTTCAGCTGTGCCATCAACTAATCTCCCTGCTGACTGGAAAAGACCAGACTGTCCTTGTCACATCTACACACTGAATGAACTGCCCCTGTCCCCCTGCCTGGCTAAAGCCAGCTGTGGATAAGCCACACAGCATAGTATGGCATTCTGACCGCATTGTATGCAGTGGTACATTCTACCCCACTTGTCATGTTATGGCAATGACACCTCACAGTATTGAGACAGCAGGACGTTTGATATGCTCAACCAAAGTGTGTATGAGGATGTATTTATGGATGCGTTCATGTGGAATGACCACGCACAGATGAGGGAGGTGAAGGAAGGGAAATATGAAGATATCAAAGACGCTTCAAAAgggacagagtgggagagagcaaAAAATTATTGGAACTGTATAGAGGAAATTAACAAGAAagtgggcagggagggaggggtcgGCTCAACATACCTTGGCATCCATCCCTCTTCTTTTGTAAGAATGGAGAGCTGGTGAGCCTCCAGACCTTCAGAAGTCCTTGACACACTAATCCTGGGTGAGAGGACAGAACGGTACAACACGATCCCACACTGGGAACCCAGACAAAGGAGCCCCCTGGGCACAGACGTcgattcaacatctattccacgtcggttcaatgtcatttcattgaaatgatgtaggaaacaacgttgattcaaccagtgtgtgcccagtgggaggtgtgtgtgagcTGACAATTCATGACTCAAGTCATTGATATAGACTGACTACCTGTATGATCAAGACTTATTGTCTATATTTTAACAAAGTGTAATTTGACCGTGTATGAGCTGATCGGCCCACCTAGCTGTGTGTTAATGTTGACATCGGATGTATCTGGTAGAGTTAGTGAACAGATCATACAGAATGATGTGAGTCTCTACTGTTGTAGAGGaaagtggggtaagttgagccatttcttacattcagcatcactctgtcaagggaaatatagtattctttctaacaaagatatctacatgtatttcaggatgttgtgtatccctggaaataaacagaattcatgtaaacattatagTTTTGAAAGCATAGTTtgtctcttggcacaacttagTTGAGCTGGGGGCCGGGTAAGTTAAGTTAAGCCGTCTACAAATgtctgtactgaatgaaatattaccactacctgttTCCCAAATACAATTCAACACCATCATAATCA

Function

NR:

description
PREDICTED: telethonin-like

GO:

id name namespace
GO:0033292 T-tubule organization biological_process
GO:0060047 heart contraction biological_process
GO:0030018 Z disc cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624798.2 True 2279 mRNA 0.49 2 69651548 69654168
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Neighbor

gene id symbol gene type direction distance location
LOC110538161 LOC106600998 coding downstream 47326 69587424 ~ 69604222 (-)
LOC110538159 LOC106607265 coding downstream 66617 69561882 ~ 69584931 (-)
LOC110538158 LOC106607264 coding downstream 94029 69505892 ~ 69557519 (-)
LOC110538156 LOC106600993 coding downstream 287674 69321652 ~ 69363874 (-)
LOC110538154 phb coding downstream 337504 69310496 ~ 69314044 (-)
LOC110538165 LOC106607388 coding upstream 7238 69661406 ~ 69665419 (-)
LOC110538166 LOC106601001 coding upstream 13677 69667845 ~ 69683203 (-)
LOC110538167 LOC100194587 coding upstream 29485 69683653 ~ 69718391 (-)
LOC110538169 LOC106607271 coding upstream 124022 69778190 ~ 69795116 (-)
LOC118937922 NA coding upstream 134765 69788933 ~ 69789069 (-)
G1106698 NA non-coding downstream 25961 69624769 ~ 69625587 (-)
G1106635 NA non-coding downstream 153895 69497439 ~ 69497653 (-)
G1106611 NA non-coding downstream 191580 69459759 ~ 69459968 (-)
G1106577 NA non-coding downstream 198954 69403627 ~ 69452594 (-)
G1106562 NA non-coding downstream 267540 69380224 ~ 69384008 (-)
G1106822 NA non-coding upstream 223002 69877170 ~ 69878366 (-)
G1106827 NA non-coding upstream 237147 69891315 ~ 69891726 (-)
G1106810 NA non-coding upstream 261240 69915408 ~ 69935353 (-)
G1106846 NA non-coding upstream 282728 69936896 ~ 69937403 (-)
G1106857 NA non-coding upstream 297815 69951983 ~ 69952237 (-)
G1106634 NA other downstream 154586 69496640 ~ 69496962 (-)
G1106463 rl19 other downstream 482660 69166461 ~ 69168888 (-)
LOC110538128 LOC106600798 other downstream 1147642 68495125 ~ 68517925 (-)
LOC110538106 wipf2 other downstream 1785906 67860396 ~ 67867954 (-)
G1103529 NA other downstream 1795540 67853833 ~ 67856008 (-)
G1107004 NA other upstream 582926 70237094 ~ 70237601 (-)
LOC110538202 LOC106601032 other upstream 1105747 70752569 ~ 70775014 (-)
G1107481 NA other upstream 1490487 71144655 ~ 71147165 (-)
G1107536 NA other upstream 1658091 71312259 ~ 71313001 (-)
nudt1 8odp other upstream 1992630 71646624 ~ 71648371 (-)

Expression

LOC110538164(LOC106601000) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 800.
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LOC110538164(LOC106601000) Expression in each Bioproject

Bar chart with 19 bars.
LOC110538164(LOC106601000) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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Co-expression Network