LOC110538165 (LOC106607388)


Basic Information

Item Value
gene id LOC110538165
gene name LOC106607388
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 69661406 ~ 69665419 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624799.2
GCCTAGGCTTCTTTCATCTGGGGAGTGTGTGGTTTTAAGTGTATATGATTGGATGAATAAAGGAGATAAGAGTGAGGGTACAGGAGCTAGGGCCTTGCTATTGCTGCTGGGGGGCAGAGGATCGTTCAGCTCACATGACTGGGCTGTGACTGAGTTGGGTCTTGTGTGGATCTGTGGTGATGAGTAAGAGGGGAGAGGCTACTCAGTTCTCTCTTTGTGGTGAGACATTCCCTGGGTCATCCTCTCTTCCAGCTTCTCTGATCCAGGAGGAAAGTCTCTGGGCCAGGATTTGGAGACCCTAGCTAGTGACCTCTTCTGGACCTCAGACATCAGGATCTGGAATGAGAAGAGGATTCCACACCAGGATATACAGAGTGGATGTCGAATGGAGATTGGAGCCCATAGAGCTGTAACTTTTGTGTCTGGAAACTAGTTGAAAATGACCTGTTCACTCTTGACTCTCTTTAGAATGGTTTCTGTCTGACCGAGATATTTTTATTGAAACTCATTTTGTCAGTGTGGAGGCAGAGTATCAACAGAGTGAGAATCGTGGGTGTTCCAACAGCTCTGTGAGTGCTTGACAAAATTTTTCTCTTTACTCCTGTGGATATTGTTTTGGAGTCAAACTCGGAGGGTGTGACCAAGGTTCCAGGTCTGAGCCCTCATTCTACACCACTGGGTCACCTATCCTCAGCAGCCACCACAGGGAACTGGGAGACAGAAAAGTGGTTATAGTGTGTTGGGCCAACTACACCGGTGGAGAGGACCTTTATTTACCCCTTCTTACCTGTCCTGTACCTGGATAGGACTTGGAAAACGaGATGGGGGCTGCCTTCAAGAGGTTCTGTGCTCGgttctgttgctgctgctgctgtagcGATGATGaaagtgaggaggagaaggagcctTTAATCAGtCCTGACACTTTGGAGTACTTTGACCGCGAGGCAAAGAAgcgaagggaacaggaacagaacCTATGGAGTGAGCCAGGCGACCCGAGCCACTCCGAGAGAGACGATGACCGGATCCTGTACAACCTCATCCAGAACAGGAACCAGACCCGCAGGGGCTCACTGGCGCACCGGCGTCTGAGTGTGGACATTGAGGGTATGAGAGATCTGCGTCGGGAGGTCAGGGACAAGTGGAAGATGATCCTGGAGAATTTAGGGTTCATGGCGGAGGCGGAGTCTCTGCTGACGGTGTCTGCCAGTGCGTCGTATGACCGTATGAAGAACGCCTCGGCGTCACGCACACTACTGCACACGCTCCACTCTGAGACATCTATCTTCaacacccgggaggccccacctGAGAGATACCTCTTCATCCTGGATCGTCTCATATACCTGGATGCTGCTGAGGACTTCTTGGCGAAGGCTAGACGCTTCTACCCCAAGCGTGATActgatgatgaagatgaggacAACCCATTAGCAGTCAACCTGCCGTTGCTACTGGCCAGAGTGAACCGCACCATGAACGGAGAAGGGAGCGATGATGAGGACGAGAGGCTGGATGAGGAAGATGGGAACGGAAGAGAGGACAACTTCTAGACAGAACAGGAGCTGCAATGACCTCAAACAGTAGACAGGGGGCAGCACTTAGTTTATGTTGCAGAGTTGGGAGTATGCAGTACTAGGATGTCTGATTCTGAATGTACTCTGTTGAAAATACTCTCCCAATTTGCACTAACGctaggggctctattcaatctgtgttGCTGAAGTGTTACAAATTGtgcaatagaaatgtaaaggtcatttttGACTGAACAGACATACAGTGTTTACTGTGAAAGCAGTCTCTGCTAACACGGGAACATTGCCTTCACATTTCAATCACTCTGTAACGCTGCACTTCCGCGATTCAAATTTAGTAGAGCCCGAggtttgaacaaaaatatacagctTTCCTTTCTCCTCATCAGAACCGTGATCCAATTTGATTCTGGTTTTCTTATTTTTCTGTTTAGGCATACTTAGCTGGGTCTCAGGTATATCAGGGAGAGTTTGAGGTTTTCACCctgccattttttatttttatccatcCAGACCGTGTTAGTTACCCAGCTCCCTGGGCTGTTCATTATTGGTCTCCGCCAGGGAACACAGTGGACACAGTTAAACCCAGCACTGAAACCCGTAGGGCACAGCTGTCCTGTTCCACATCAGCACTTTGTCTCATGATTATCAGCACTTGTTTTATATAGTCACAAGACAGTCTTTTAAAACCAGTAGTTGAGATTACCTTGGAATAAATGT

Function

NR:

description
melanoregulin-like

GO:

id name namespace
GO:0016324 apical plasma membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624799.2 True 2264 mRNA 0.48 6 69661406 69665419

Neighbor

gene id symbol gene type direction distance location
LOC110538164 LOC106601000 coding downstream 7238 69651548 ~ 69654168 (-)
LOC110538161 LOC106600998 coding downstream 57184 69587424 ~ 69604222 (-)
LOC110538159 LOC106607265 coding downstream 76475 69561882 ~ 69584931 (-)
LOC110538158 LOC106607264 coding downstream 103887 69505892 ~ 69557519 (-)
LOC110538156 LOC106600993 coding downstream 297532 69321652 ~ 69363874 (-)
LOC110538166 LOC106601001 coding upstream 2426 69667845 ~ 69683203 (-)
LOC110538167 LOC100194587 coding upstream 18234 69683653 ~ 69718391 (-)
LOC110538169 LOC106607271 coding upstream 112771 69778190 ~ 69795116 (-)
LOC118937922 NA coding upstream 123514 69788933 ~ 69789069 (-)
si:dkey-208k4.2 LOC106601008 coding upstream 233885 69899304 ~ 69903006 (-)
G1106698 NA non-coding downstream 35819 69624769 ~ 69625587 (-)
G1106635 NA non-coding downstream 163753 69497439 ~ 69497653 (-)
G1106611 NA non-coding downstream 201438 69459759 ~ 69459968 (-)
G1106577 NA non-coding downstream 208812 69403627 ~ 69452594 (-)
G1106562 NA non-coding downstream 277398 69380224 ~ 69384008 (-)
G1106822 NA non-coding upstream 211751 69877170 ~ 69878366 (-)
G1106827 NA non-coding upstream 225896 69891315 ~ 69891726 (-)
G1106810 NA non-coding upstream 249989 69915408 ~ 69935353 (-)
G1106846 NA non-coding upstream 271477 69936896 ~ 69937403 (-)
G1106857 NA non-coding upstream 286564 69951983 ~ 69952237 (-)
G1106634 NA other downstream 164444 69496640 ~ 69496962 (-)
G1106463 rl19 other downstream 492518 69166461 ~ 69168888 (-)
LOC110538128 LOC106600798 other downstream 1157500 68495125 ~ 68517925 (-)
LOC110538106 wipf2 other downstream 1795764 67860396 ~ 67867954 (-)
G1103529 NA other downstream 1805398 67853833 ~ 67856008 (-)
G1107004 NA other upstream 571675 70237094 ~ 70237601 (-)
LOC110538202 LOC106601032 other upstream 1094496 70752569 ~ 70775014 (-)
G1107481 NA other upstream 1479236 71144655 ~ 71147165 (-)
G1107536 NA other upstream 1646840 71312259 ~ 71313001 (-)
nudt1 8odp other upstream 1981379 71646624 ~ 71648371 (-)

Expression

LOC110538165(LOC106607388) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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LOC110538165(LOC106607388) Expression in each Bioproject

Bar chart with 15 bars.
LOC110538165(LOC106607388) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
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Co-expression Network