LOC110486238 (LOC106607270)


Basic Information

Item Value
gene id LOC110486238
gene name LOC106607270
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 69730257 ~ 69735305 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557684.2
GACGTGCCAACCATATGGCCTGGCATCATAGCTGGTATGTAACCCTGCCTGGTAGCGATGCCACAGTCTCAGAGCGCGCGCGCGGATAGCACACTGAAAGCACCCTGCCGCACCTATAGGAGCGTTTGCTCGCGGTCCCAGAAGATGGTCTGAACTCACGCGCTTTCCACCCCTTCAAGAGCTCCCGCTGAGTGCCGCAATGTTGACTAGGCTGTTCAGTGACCCGTCGCTGCTTCCCGACATGCAGAAGTATTCGGCCTGGGCAGAGGACAGCGAGAGCGAGGACTCGAAGACCAAGGAGGATGAGGATCACTGCCGCGTGGGCGATGACGACATGGATGTCCCGGACCTGAGAAGCAGCCGGGCACATTCTGAGATCGGCGGTGAAGACGAGGACGACGACGAGGCGGATGAGGACGAAGGAGAAGACGGTGCAGAGGGGGACGGGCCCAAAAAACGGGGCCCTAAGAAGCGTAAAATGACACCTGCCCGTATCGAGCGCTCCAAGTTGCGTCGTCAGAAGGCAAACTCACGGGAGAGGACGCGCATGCACGATCTGAACTCTGCGCTCGACAATCTGCGCAAAGTCGTACCCTGTTACTCCAAAACGCAAAAGCTCTCCAAAATCGAGACTCTCCGTTTGGCCAAGAACTATATCTGGGCCCTCTCTGAGATCCTGCGCTCCGGGAAGAAGCCTGATATTGTGTCCTACGTGCAGACGCTGTGTAAAGGATTGTCCCAACCCACGACCAACCTGGTTGCGGGTTGTCTGCAGCTCAACTCCCGAAACTTCCTAACGGAGCAGTGTCCGGAGGGAGGACGCTATCCCAGCTCCAACTCCTTCTCCATGCATCCTTACCCCTACCAGTGCTCCCGCCTCTCCAGCCCTCAGTATCAGTCTGGTTCCAACTCGCATCCCTTACGGACACAAGGGTACTGCTCAGCCTACGATTCACTGTACGGTGGCAGTGGATCTCCAGAATACAACAGCCCAGAGTATGAGGGGCCCATCTCCCCTCCCGTGTGCATCAATGGCAACTTTTCTCTGAAGCACCAGGGCACTACGTCCCCCGAGGTAGCCGAGAAAGGCTACCATTACTCTATGCATTACTCCGGCCTGGCCGGCTCTCGCCCCACTGCTGGCCACATATACGGTTCTTCAGGTGTGCGGAGCAGCATCCACTCTGAAAACGTATCGCCTTACCACGACATGCACCTGCACCACGAAAGAGCCCCCGTCCCCGTATACGATGAACTCAATGCGTTTTTCCACAACTGAAACGGCAGTAATATTGCCATGCGTGGGAGTCTTCTTGCAATCAACAATCAATTAGTTGCCCACCTTTGGCAAGGAGCGTGCACGGTCACCCCCCAGCCCCTACCCTAATACTTAGTCTCAAAGGACTATGACACCAGACACTGATCATTGCGGAAACAGcgttttatttattgtttttctATGTCCTTTtatataattgtatttattttgtttctATTCTGTGACGATGGGATGCTGTGAAAATGTTGCATTTGAAATGGAATGTGTACAGATTTGACGGTGATTGGCGTATGGGTTATTATTGAAATTGCTAGATGAACATAGTTAAAATGCAACCGCATAGTCACGTTTATAACATTGTAACAACCGATGATGCTGTAACTAATTTGGAAATAATAGCCTAATATGAAAATAGAGGATTCAATTAAGAAGCAAGCAGTGCACTTAAAAGCAAGCATGTCGCAGAGATaggaagatatatattttttaaatgtcggCAATTGGCAACAGCTATGTCTGATCATTAAACACATTTCACATCTATGCAAGAACTAGCCTACGCCAAACGAGTATACAAGGACCAACTATAGGCTATATCTAAAATAGTGTACATTAAATCATTCATTTAAATCTTCTCAACAATATACTTTCATTGCTTCTCAGCCCCTATTCTGATTACCATAACACACACGGTGGGGAATTGCTTGACGTCTATTTTTGTTATTGAGGGACATGGATTCAAGTCACCATAATGACACAGAGAATACAATTTTCGATCCCTAGAATACCACCAATGGATAAGGAAAAGCAAAGGAAAATGAAACACTACTTGGCAGAGTAGGCCTATAAGGCTAAAGCCAACATTTGAAATGAACGATTCTAAAGAAGCAGATATGGGCTCATGCTACCGGTTCCGGATGGTCAAGTCCTTCTAATGTAAACGATTCGATAGTGTTTACGTTCATTAGATGAGGCTACCTTTGATGGATTTGCAAGTTTGCACTAGATTTTAGATTGCATTTTAATGCAATCGAAAATGGTTTAATGTAAGCCAATAGCCTTTGCCTTTATACATCTACTGGCCTTTATACATCTACAATCCTGTCAGTGACTGGACGGAAAATGGGACAGGCCGATATTAAATATGCTAAACACAATATTTCATGTCATGCCACAGGAACAAATATGGCAAGTCAAGTAACTTTCTAAATCAATCGAGCACATTGACTTGTTGAATAGGACTATTTCTAAAAGTGTAAGGGCCAGGATTTAGCACTCAATTTCGAAATAGTCGAAGTTATATCAGAAGGTCGATATATTGCACTGAAATAACAtgattattactattattgttattattatttacaaaCTGTTTTATTTCATGCATCCTTTTGCCTATAATAACTCATCAATGCAAATATTTCCACTAAGGGTCCCCAGAGTCGTCAACATGTGTTGCATTTTTCATTGAAAGTGAAAGTTGAAACTTTGTATTTAAACAATGTGTGTGTGGTAAAATAAAATGATAATACATGAA
>XM_021557685.2
AAGGTTAATTCGTGACCGTTTTTTTGGTGGATGTTTGTGCCTCCTGTAAACGTCTGTTTTGAGTTCACTCAGCTATATGCCATTTTTGAACATTTGGATTATGGTGTAGCTCTGGTTCTTCGTTTGGCACGATGTTATGCTCCATTCGTCCTTCAACTTTTAACAGCGCGGACCTCCATTCTGTGTGTTAATTATAGGCTAGGAGTGCAATATTAGTATTCCATGCTTATTTTGTTCAGAAAACAGCAATACACAAAGACAAGCTCTAGTTTACCGTCTATCTCTGCGGACAATCGAAAAAAATGCAACAATCTTCCTCCTGAATTTAATTCATTTctatagtcagacagtataaGGCATTCATTTGATTagtgaaaaatacaaaataaaacctGTTTCCATGGACCCATGGaaacagagagatgaagagaaagagagatacataggtagagagaggggaggtagaatTATTCTTCACCGTCAGCTAATTATTTCTGCATCTCATGGCTTAGAGAGAAGATTTATCGACGATTTTATCTGAGTGTTCATCTTGGAGAAAAGGAAAGGGTGGGTGGGGCGTTATTGAAAGTGAATGTACAGTAGGCTAATACGGACATTATTTATTTGTGTAGTTTTATCATCCATAATTATTCTATCAACAGCACACCCTTTTACATTCCAAATACATCGATATCTCCCCTAAATCACGCAAGCACGGGCCATGCAAGAGGAGATTATTGTTGCAACTTCAAGAAAATACTAATCTGTTTTCTGAAATGCATTTTTGATATATATTTAACGACTGCTAAAAGGATACAAGCAATTTCCATCTGTAATTGCAAACCTTTCCAACTAAAAGTGGTTTGGAATCGCTCAGTCGTGCATACTGAATTATGTGTGAAATATTTTTCTGGTAAGGTAGTCTACATGGTCTGTTaattaaacgttttttttttttttttttttttttttttaaatgagcaaATCTCCTGAGCCTGAAATTTCCAAACGAGATTTTGCCTCTGGCACACCCTCTAGATAATTAGCACCGTATTCCTCCTGGTTGACTTTGGGTCCACACAACATCACGTAGCCCAACCACAGTTCTCCAGCCTACCAGAGATACAAGAGATTTACAGTGATTTAGGGTGACAATTATGTTACTGGTTTGAGATGGTTTAAACTGTCCATCTATCATATCTTCGCACTGGCTATTTACATTCAAAATAATAATTGATAATTGGTGATAATTGATGCCATTTTCAAAAAGGCCTGGCTCAATCAACTTCGCATTTTTGGATTATAACATTTGGATGATATTCTAATTGGCGTTTGGTGCCGCAATGTTGACTAGGCTGTTCAGTGACCCGTCGCTGCTTCCCGACATGCAGAAGTATTCGGCCTGGGCAGAGGACAGCGAGAGCGAGGACTCGAAGACCAAGGAGGATGAGGATCACTGCCGCGTGGGCGATGACGACATGGATGTCCCGGACCTGAGAAGCAGCCGGGCACATTCTGAGATCGGCGGTGAAGACGAGGACGACGACGAGGCGGATGAGGACGAAGGAGAAGACGGTGCAGAGGGGGACGGGCCCAAAAAACGGGGCCCTAAGAAGCGTAAAATGACACCTGCCCGTATCGAGCGCTCCAAGTTGCGTCGTCAGAAGGCAAACTCACGGGAGAGGACGCGCATGCACGATCTGAACTCTGCGCTCGACAATCTGCGCAAAGTCGTACCCTGTTACTCCAAAACGCAAAAGCTCTCCAAAATCGAGACTCTCCGTTTGGCCAAGAACTATATCTGGGCCCTCTCTGAGATCCTGCGCTCCGGGAAGAAGCCTGATATTGTGTCCTACGTGCAGACGCTGTGTAAAGGATTGTCCCAACCCACGACCAACCTGGTTGCGGGTTGTCTGCAGCTCAACTCCCGAAACTTCCTAACGGAGCAGTGTCCGGAGGGAGGACGCTATCCCAGCTCCAACTCCTTCTCCATGCATCCTTACCCCTACCAGTGCTCCCGCCTCTCCAGCCCTCAGTATCAGTCTGGTTCCAACTCGCATCCCTTACGGACACAAGGGTACTGCTCAGCCTACGATTCACTGTACGGTGGCAGTGGATCTCCAGAATACAACAGCCCAGAGTATGAGGGGCCCATCTCCCCTCCCGTGTGCATCAATGGCAACTTTTCTCTGAAGCACCAGGGCACTACGTCCCCCGAGGTAGCCGAGAAAGGCTACCATTACTCTATGCATTACTCCGGCCTGGCCGGCTCTCGCCCCACTGCTGGCCACATATACGGTTCTTCAGGTGTGCGGAGCAGCATCCACTCTGAAAACGTATCGCCTTACCACGACATGCACCTGCACCACGAAAGAGCCCCCGTCCCCGTATACGATGAACTCAATGCGTTTTTCCACAACTGAAACGGCAGTAATATTGCCATGCGTGGGAGTCTTCTTGCAATCAACAATCAATTAGTTGCCCACCTTTGGCAAGGAGCGTGCACGGTCACCCCCCAGCCCCTACCCTAATACTTAGTCTCAAAGGACTATGACACCAGACACTGATCATTGCGGAAACAGcgttttatttattgtttttctATGTCCTTTtatataattgtatttattttgtttctATTCTGTGACGATGGGATGCTGTGAAAATGTTGCATTTGAAATGGAATGTGTACAGATTTGACGGTGATTGGCGTATGGGTTATTATTGAAATTGCTAGATGAACATAGTTAAAATGCAACCGCATAGTCACGTTTATAACATTGTAACAACCGATGATGCTGTAACTAATTTGGAAATAATAGCCTAATATGAAAATAGAGGATTCAATTAAGAAGCAAGCAGTGCACTTAAAAGCAAGCATGTCGCAGAGATaggaagatatatattttttaaatgtcggCAATTGGCAACAGCTATGTCTGATCATTAAACACATTTCACATCTATGCAAGAACTAGCCTACGCCAAACGAGTATACAAGGACCAACTATAGGCTATATCTAAAATAGTGTACATTAAATCATTCATTTAAATCTTCTCAACAATATACTTTCATTGCTTCTCAGCCCCTATTCTGATTACCATAACACACACGGTGGGGAATTGCTTGACGTCTATTTTTGTTATTGAGGGACATGGATTCAAGTCACCATAATGACACAGAGAATACAATTTTCGATCCCTAGAATACCACCAATGGATAAGGAAAAGCAAAGGAAAATGAAACACTACTTGGCAGAGTAGGCCTATAAGGCTAAAGCCAACATTTGAAATGAACGATTCTAAAGAAGCAGATATGGGCTCATGCTACCGGTTCCGGATGGTCAAGTCCTTCTAATGTAAACGATTCGATAGTGTTTACGTTCATTAGATGAGGCTACCTTTGATGGATTTGCAAGTTTGCACTAGATTTTAGATTGCATTTTAATGCAATCGAAAATGGTTTAATGTAAGCCAATAGCCTTTGCCTTTATACATCTACTGGCCTTTATACATCTACAATCCTGTCAGTGACTGGACGGAAAATGGGACAGGCCGATATTAAATATGCTAAACACAATATTTCATGTCATGCCACAGGAACAAATATGGCAAGTCAAGTAACTTTCTAAATCAATCGAGCACATTGACTTGTTGAATAGGACTATTTCTAAAAGTGTAAGGGCCAGGATTTAGCACTCAATTTCGAAATAGTCGAAGTTATATCAGAAGGTCGATATATTGCACTGAAATAACAtgattattactattattgttattattatttacaaaCTGTTTTATTTCATGCATCCTTTTGCCTATAATAACTCATCAATGCAAATATTTCCACTAAGGGTCCCCAGAGTCGTCAACATGTGTTGCATTTTTCATTGAAAGTGAAAGTTGAAACTTTGTATTTAAACAATGTGTGTGTGGTAAAATAAAATGATAATACATGAA
>XM_036938229.1
TGTCATAATAACAATGtacattattattaatattattattattagaataATTTATTGGCAATCAAAATGGATCTTTGTGGATAATATTAACCCTTGTTATCCTATAGGGCTCTCTGGTAGGATATAAGGATAAGGTTGAGCGTGATAAGACAACAGCGGCTCTGCAGTGCCGCAATGTTGACTAGGCTGTTCAGTGACCCGTCGCTGCTTCCCGACATGCAGAAGTATTCGGCCTGGGCAGAGGACAGCGAGAGCGAGGACTCGAAGACCAAGGAGGATGAGGATCACTGCCGCGTGGGCGATGACGACATGGATGTCCCGGACCTGAGAAGCAGCCGGGCACATTCTGAGATCGGCGGTGAAGACGAGGACGACGACGAGGCGGATGAGGACGAAGGAGAAGACGGTGCAGAGGGGGACGGGCCCAAAAAACGGGGCCCTAAGAAGCGTAAAATGACACCTGCCCGTATCGAGCGCTCCAAGTTGCGTCGTCAGAAGGCAAACTCACGGGAGAGGACGCGCATGCACGATCTGAACTCTGCGCTCGACAATCTGCGCAAAGTCGTACCCTGTTACTCCAAAACGCAAAAGCTCTCCAAAATCGAGACTCTCCGTTTGGCCAAGAACTATATCTGGGCCCTCTCTGAGATCCTGCGCTCCGGGAAGAAGCCTGATATTGTGTCCTACGTGCAGACGCTGTGTAAAGGATTGTCCCAACCCACGACCAACCTGGTTGCGGGTTGTCTGCAGCTCAACTCCCGAAACTTCCTAACGGAGCAGTGTCCGGAGGGAGGACGCTATCCCAGCTCCAACTCCTTCTCCATGCATCCTTACCCCTACCAGTGCTCCCGCCTCTCCAGCCCTCAGTATCAGTCTGGTTCCAACTCGCATCCCTTACGGACACAAGGGTACTGCTCAGCCTACGATTCACTGTACGGTGGCAGTGGATCTCCAGAATACAACAGCCCAGAGTATGAGGGGCCCATCTCCCCTCCCGTGTGCATCAATGGCAACTTTTCTCTGAAGCACCAGGGCACTACGTCCCCCGAGGTAGCCGAGAAAGGCTACCATTACTCTATGCATTACTCCGGCCTGGCCGGCTCTCGCCCCACTGCTGGCCACATATACGGTTCTTCAGGTGTGCGGAGCAGCATCCACTCTGAAAACGTATCGCCTTACCACGACATGCACCTGCACCACGAAAGAGCCCCCGTCCCCGTATACGATGAACTCAATGCGTTTTTCCACAACTGAAACGGCAGTAATATTGCCATGCGTGGGAGTCTTCTTGCAATCAACAATCAATTAGTTGCCCACCTTTGGCAAGGAGCGTGCACGGTCACCCCCCAGCCCCTACCCTAATACTTAGTCTCAAAGGACTATGACACCAGACACTGATCATTGCGGAAACAGcgttttatttattgtttttctATGTCCTTTtatataattgtatttattttgtttctATTCTGTGACGATGGGATGCTGTGAAAATGTTGCATTTGAAATGGAATGTGTACAGATTTGACGGTGATTGGCGTATGGGTTATTATTGAAATTGCTAGATGAACATAGTTAAAATGCAACCGCATAGTCACGTTTATAACATTGTAACAACCGATGATGCTGTAACTAATTTGGAAATAATAGCCTAATATGAAAATAGAGGATTCAATTAAGAAGCAAGCAGTGCACTTAAAAGCAAGCATGTCGCAGAGATaggaagatatatattttttaaatgtcggCAATTGGCAACAGCTATGTCTGATCATTAAACACATTTCACATCTATGCAAGAACTAGCCTACGCCAAACGAGTATACAAGGACCAACTATAGGCTATATCTAAAATAGTGTACATTAAATCATTCATTTAAATCTTCTCAACAATATACTTTCATTGCTTCTCAGCCCCTATTCTGATTACCATAACACACACGGTGGGGAATTGCTTGACGTCTATTTTTGTTATTGAGGGACATGGATTCAAGTCACCATAATGACACAGAGAATACAATTTTCGATCCCTAGAATACCACCAATGGATAAGGAAAAGCAAAGGAAAATGAAACACTACTTGGCAGAGTAGGCCTATAAGGCTAAAGCCAACATTTGAAATGAACGATTCTAAAGAAGCAGATATGGGCTCATGCTACCGGTTCCGGATGGTCAAGTCCTTCTAATGTAAACGATTCGATAGTGTTTACGTTCATTAGATGAGGCTACCTTTGATGGATTTGCAAGTTTGCACTAGATTTTAGATTGCATTTTAATGCAATCGAAAATGGTTTAATGTAAGCCAATAGCCTTTGCCTTTATACATCTACTGGCCTTTATACATCTACAATCCTGTCAGTGACTGGACGGAAAATGGGACAGGCCGATATTAAATATGCTAAACACAATATTTCATGTCATGCCACAGGAACAAATATGGCAAGTCAAGTAACTTTCTAAATCAATCGAGCACATTGACTTGTTGAATAGGACTATTTCTAAAAGTGTAAGGGCCAGGATTTAGCACTCAATTTCGAAATAGTCGAAGTTATATCAGAAGGTCGATATATTGCACTGAAATAACAtgattattactattattgttattattatttacaaaCTGTTTTATTTCATGCATCCTTTTGCCTATAATAACTCATCAATGCAAATATTTCCACTAAGGGTCCCCAGAGTCGTCAACATGTGTTGCATTTTTCATTGAAAGTGAAAGTTGAAACTTTGTATTTAAACAATGTGTGTGTGGTAAAATAAAATGATAATACATGAA

Function

NR:

description
neurogenic differentiation factor 2-like

GO: NA

KEGG:

id description
K09078 NEUROD2; neurogenic differentiation factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557684.2 False 2816 mRNA 0.46 2 69730257 69735305
XM_021557685.2 False 3960 mRNA 0.42 2 69730531 69735305
XM_036938229.1 True 2791 mRNA 0.44 2 69731899 69735305

Neighbor

gene id symbol gene type direction distance location
LOC110538162 LOC106600999 coding upstream 118002 69610799 ~ 69612255 (+)
LOC110538157 LOC106600994 coding upstream 294980 69402993 ~ 69435277 (+)
LOC110538155 LOC106600992 coding upstream 408739 69315451 ~ 69321518 (+)
LOC110538150 LOC106600987 coding upstream 501057 69197666 ~ 69229200 (+)
LOC110538148 NA coding upstream 554288 69171519 ~ 69175969 (+)
LOC110538170 LOC106601006 coding downstream 64369 69799674 ~ 69819817 (+)
LOC110538173 LOC106607273 coding downstream 119475 69823215 ~ 69875030 (+)
LOC110538175 LOC106601009 coding downstream 172116 69907421 ~ 69935378 (+)
LOC110538177 LOC106607277 coding downstream 217117 69952422 ~ 69957520 (+)
LOC110539166 LOC106601013 coding downstream 230201 69965506 ~ 69967488 (+)
G1104843 NA non-coding upstream 11975 69685230 ~ 69718282 (+)
G1104857 NA non-coding upstream 35052 69683678 ~ 69695205 (+)
G1104859 NA non-coding upstream 40034 69689362 ~ 69690223 (+)
G1104956 NA non-coding upstream 102703 69624991 ~ 69627554 (+)
G1104909 LOC106600998 non-coding upstream 137844 69588532 ~ 69592413 (+)
G1104856 cdk12 non-coding downstream 51989 69787294 ~ 69788417 (+)
G1105120 NA non-coding downstream 135713 69871018 ~ 69871310 (+)
G1104842 NA non-coding downstream 140948 69876253 ~ 69878388 (+)
G1105129 NA non-coding downstream 155913 69891218 ~ 69936515 (+)
G1104162 NA other upstream 1198396 68528281 ~ 68531861 (+)
G1104149 LOC106600798 other upstream 1224962 68504041 ~ 68505295 (+)
G1103416 eif1b other upstream 1721780 67987694 ~ 68048717 (+)
LOC110538103 LOC106600823 other upstream 1920194 67793428 ~ 67810071 (+)
G1105194 NA other downstream 287403 70022708 ~ 70048987 (+)
G1105281 NA other downstream 427384 70162689 ~ 70194672 (+)
G1105357 NA other downstream 589653 70324958 ~ 70327126 (+)
G1105393 NA other downstream 635450 70370755 ~ 70371211 (+)

Expression


Co-expression Network