LOC110538175 (LOC106601009)


Basic Information

Item Value
gene id LOC110538175
gene name LOC106601009
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 69907421 ~ 69935378 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938232.1
GATTCGCATACACTCATGCATATATAGATAGAGCTTACACACGCACAATCCTGTAGGATTTATGCATACGTGCACTCAAATCTCCCCATTTGACCTATTCTACATAATCTAGGCTAATTTGTCAATTCCATTATTGATCGGCTCTGGCATAGGCCTATTTGTTTTTTCATTTAGTGATAGATTGGCTATTTAATTCAATTGCCTGATATCGGTGAGACTGTATGCTACGAGCTGAATGGGAGATGAGAGGACGAGCGTCAGCTGTCAACCAGATTCAGTCGgtgttttttctctctcgccATAATCGTTTGTGCGTCGGTTTTCTTTTTATCTGCGCCTGTTACACTGTAACGCACTCGATGTTAATTCGGGGGAATATGTGAACATCATGCTGGCGGTGTGGTGCTTGGTCTTTGCTGCAGTGGGCGAGAGGTTTGCCGTGTCAGTTGGCAGTTATCAGGCCTCCCGCGTTACAGGCGGCGGAAGGTCTCCTTTGGTGCGGGATGCGAGTTTGTGGGATTGGTTCTCGCCAGAGGAGCGGGGAGACAGCAGCGACATTGCGGCCGAAGTCACCTATCCAAAGCGTCTGGTGCAACAGATGGAGTCGAAGGAAGAAATGTCCCATGGCTATTTGGATACCCGCGTGAAGAATACCACGGGAGGCACCTCGCCAGTCCATTTGGCCCAGAGTTGTTTCCAGGTGGAAACCTTCGGACACACCTTCACCCTGGACCTGGAGTTAAACCACAACCTCCTGTCCTCAGACTATGTGGAGCGGCACTTTCACCAAGACGGCAAACCCTCGCAGTCTAtgGGAGGGGAGCACTGCTACTACCAAGGGAGGTTGAGGGGCTTACCAGAGTCCTGGGCAGCTCTCTCCACCTGTCTTGGCTTATGtgGTATGTTTTCTGATGGGATGTTCTCTTATGGGATTGAGCCTCTTTTCGACGGGACCAATCAGACTGAGGGGGCCCACCTAGTGCGTAGGATGCCTGATGTCAGACTATCCCCAGACTGTCAAGACTGCACAGACCACAGTGAGGGGGATGGAGCCAGAGGTAATGGTGATGAGCAGATGAAGGATCCCCGGGTCAGTGAGGTGCTGAGGCGCTCTAAGAGACAGCTGCCACGCAGGCCCACCGTGCAGTCAGAGACCAAATACATCGAGCTGATGGTGGTCAACGACTATGAAATGTTTGTACAGCTGCGACGCTCCACTACCCAGGCCAGGAACTTTGCCAAAGCAGTGGTCAATATGGCTGATGCAATTTATAGGGAACAGCTGAACACACGCATCGTGCTGGTTGCCATGGAGACCTGGTCGTCGGCCAACATGGTTCCCGTGGTGACGGACCCGTTGACGACGCTGCAGAACTTCATGAAGTACAGGAAGGACAGTATTAAGGAGCAAAGTGACGTCGTGCACCTCTTCTCGGGGCGTACGTTCCAGAGCAGTCGCAGTGGGACGGCCTACACCGGAGGGGTGTGCTCTCTCACCAGAGGAGGGGGCATCAACGAGtATGGGAATGTCGGTCCTATGGCCATCACTCTGTGCCAGAGTCTGGGTCAGAACATTGGGATGAGGTGGAACAACATACGCAGCTCTGCGGgaGACTGCAGATGTCCTGATTCTTGGCTTGGTTGTATCATGGAAGACACTGGATATTACCTACCCAGAAAGTTCTCTCGATGCAGTGTTGATGAGTACATCCAGTTCTTGCTCCAGGGGGGCGGGAGCTGCCTCTTCAACAAGCCCAACAAGctGTTGGACCCTCCTGAATGTGGGAACGGCTTcgtggagacaggggaggagtgTGACTGTGGGTCTCAGCTGgAGTGTGCCCGTAGTGGAGGGGCGTGCTGTAAGAAGTGTACCCTGACCCACGATGCCATGTGCAGTAGTGGACTGTGCTGCAGTGGGTGCAGGTATGAGCTGAGAGGAGCGGTTTGCAGACAGGCTGTGAATGACTGTGACATCCCAGAGAGCTGCACAGGAGACTCCAGCcagTGCCCTCATAATGTGCACAAGCTGGATGGATACATGTGTGACACTAGTCAGGGTCGTTGTTATAGTGGTCGGTGCAGGACTCTCGACGGCCAGTGTAAGGGGCTTTGGGGCTACAATTCAGCAGACCGCTTCTGCTATGAGAAGCTGAATGCAGAGGGCACAGAGAAGGGCAACTGTGGGCGGAGTCCTGAGGACCAGGGATGGCTGCAGTGCAACAAGCCGGATGTGCTTTGTGGTTTCCTGTTCTGTATCAATATGACGGTGAAGCCAAAGTTTGGGGATCTGGAGGGGGAAGTGACCAGCCTTACAATATACCACCAGAACAAGTACCTGGACTGCCGAGGGGGCCATGTCCTGCTGGAGGATGGGTCAGACCTGGGCTACGTGGAGGACGGTACGCCGTGCGGCCCCAACATGATGTGTCTGGAGCGCCGCTGTCTCCCCGTGGCAGCCTTCAACCTCAGCACCTGCTCCGGCTCCACGCTGGGACGCACCTGCTCTGACCACGggaCATGCAGTAACGAGGTGAAGTGTATCTGTGACAGGGACCACACCGGGAAGGACTGCAGTGTCTTTGACCCCATCCCTGACCCCACGCCGCCTGCCAGCACGGAGAAGAAAGGTCCCAGTGGCACCAATATCATAATAGGGTCCATCGCAGGTGCTATTCTTCTGGCAGCTATAGTCCTAGGGGGGACAGGATGGGGATTTAAGAATATCCGAAGAGGAAGATCTGGAGGAGGataagatgtctgtctgtctgtctttgtctgtctgctcctgtctttctctcactctgtgaTGTTTCCAAGTCGGAGAAGAGGGAAAAATAACAAGTCTTCCACTCCTGTCCCGAACCTCTCCAGACCTCTTCTGTTAacatctcctctcctgtccacttcctgtctgtccaCCTGTCTATCTCCGGCCCCTCCTGGACAGTGTAGCACCTCCCACATTGCATACCAGCCAATTATATTATCCAATCAGGATAAAGTCTTTGCCACGGACAGAATGAGAAGGTTGTTGTTGGTCCCTAGAGGGGCGTCAGGGTCTTCCTGCTTTCCAGCGACTAAGTAGTATGCACTTCGGTGTCTGCGTACTGTAGTTCCCTTTCCTTCCGCTTACGACAGTCCAATGAAGAACCTGTCAACAGTGGACAAATTCAGTATGAGACATGTCTTTCCAATGCTTGTCTGGAAACACACTTCTGGCCGCTGTTTGAGATTGCTGGACTGGCCCAGACCTGCCATCTGAAAAACGATTTAAATCATAAGATGTTGTCAAAGAAACATTGATCAAAGACTCAAGTGGCCATTGGATCAGTTGAACTGCCCCTTTCAGAGAGGCCTTGTCTGGTGACTGGATGACAACCCAGATTCAGACATTATCTAGTTACAACAAGAAGAGTCCTGTATTGGGCGTGTTGTGTACAGGCCATTTCCAAAGAAGGAAGAGcaacttattgtgagaatgaCTATGAAACAAAAGCAGTAGACCGTTCAAAACATCATGGACTGATGTAGGGTTTATGTTGATTGTTAATTCTTTGTTCCTGTCTGTTGAGATGTAGGAAGGGGGAGACCCTATGGTTTTGGGATCATATTTCAAATGCAGCAGAGACCGTAACTCAGTGTTTTCAACCGTAGATCTACCAACACAACATTCCACATAGTGTTAGTTAACAGagactgtctgtatgtgtctgtattcTATTCACCACCTTCTTAAGAGGCCCAAAGTGTGTACGGTAAAGGAGGTtgaaactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgttacCAAAATTCCGGTAACTTTCCCAATATttgaaatcctggttggaagattcctggaattGTGAAGGAATTAGCAGGGAAATatggaatcctccaaccaggattcctggaaaaccagggaatgtTGAGAAAGTTACTAaaatgagtgtgtgcgtgtgagagattGAGTGAGGAAGAGAGCAGGTGAATGAGAAAAGTACTTGTCGTGTTTGGGACAGTTATGCCCTTGTTCACCGTGACACTCCTGCCAACAACACTGGTAGATAGTTTATAGATTTTTACTTCTAGAAAACGTTATCTTTCTGTTGCCTGGCTTTGTGCTCGGGAGCCAATGATAGCACACTAACAAACAAATGGTTTGTATTGAATATGTAACAACAAACTTAAACGAGCACTAGCCTACAGAATGTGAGAACACATATGCACATCtatttgtatgtacagtatgtacaagaagATAATACTGAATGTTGAATACACTGTAGGAAATTGTTTTAAAATTCAATGTTAATATTGATTCATTTAATCTGTTTCAACTAAGTATCTATCTGTCTCCTGCCATACAACTGTCCATCTCCTTTAAGCCATTCCTAGTTGTCCATCTATCTGTCTAGCAGGCACACTGCCTAGTAAACTAGCAATCTggccatctacagtgccttgcgaatgtatttggcccccttgaactttgcgaccttttgccacatttcaggcttc
>TU1256284
ttatttaaccaggcaagtcagttaagaacaaattcttattttcaatgacggcctgggaacagtgggttaactgcctgttcaggggcagaacgacagatttgtaccttgtcagctcgggggtttgaactcgcaaccttccggttactagtccaacgctctaaccactaggctaccctgccggatCAACTATTCCATAGGTTCACTTTGATTCCAAGTTATACAGCCTACTGTTTCCTCAAGTGACTTTGCTTATCAATGGACTGGAAGTGAAGATACATCTGTTTCTACAGCATGTGCACATTTCAGATGTATTTACAATCGCTGGTTGTTACTGAGTAATGAACCTGCTATCACAAGGTTCCCAGAGGACTGACTTTGGCATTAGAACAGTATCAAGATGCCTTGGTGTTACAGACAGGGGTGTTGTTGGTTGCCACTTAAATATCCCGAGGGATGTTATGATTCAGGGCTGGTAAATACTGATCGATTCAAACAAATCTACTGATCTATTGTTTGACCAAAATGAACCGTCTCGATTACTTCACACATAAAAACAAACATTGATCAAAGACTCAAGTGGCCATTGGATCAGTTGAACTGCCCCTTTCAGAGAGGCCTTGTCTGGTGACTGGATGACAACCCAGATTCAGACATTATCTAGTTACAACAAGAAGAGTCCTGTATTGGGCGTGTTGTGTACAGGCCATTTCCAAAGAAGGAAGAGcaacttattgtgagaatgaCTATGAAACAAAAGCAGTAGACCGTTCAAAACATCATGGACTGATGTAGGGTTTATGTTGATTGTTAATTCTTTGTTCCTGTCTGTTGAGATGTAGGAAGGGGGAGACCCTATGGTTTTGGGATCATATTTCAAATGCAGCAGAGACCGTAACTCAGTGTTTTCAACCGTAGATCTACCAACACAACATTCCACATAGTGTTAGTTAACAGagactgtctgtatgtgtctgtattcTATTCACCACCTTCTTAAGAGGCCCAAAGTGTGTACGGTAAAGGAGGTtgaaactctgt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938232.1 False 4696 mRNA 0.50 26 69907421 69935378
TU1256284 True 1038 lncRNA 0.42 2 69913591 69934462

Neighbor

gene id symbol gene type direction distance location
LOC110538173 LOC106607273 coding upstream 32391 69823215 ~ 69875030 (+)
LOC110538170 LOC106601006 coding upstream 87604 69799674 ~ 69819817 (+)
LOC110486238 LOC106607270 coding upstream 172116 69730257 ~ 69735305 (+)
LOC110538162 LOC106600999 coding upstream 295166 69610799 ~ 69612255 (+)
LOC110538157 LOC106600994 coding upstream 472144 69402993 ~ 69435277 (+)
LOC110538177 LOC106607277 coding downstream 17044 69952422 ~ 69957520 (+)
LOC110539166 LOC106601013 coding downstream 30128 69965506 ~ 69967488 (+)
LOC110538185 kbrs2 coding downstream 109207 70044585 ~ 70048245 (+)
LOC118937908 NA coding downstream 446791 70382169 ~ 70382221 (+)
LOC110538197 LOC106601026 coding downstream 705586 70640964 ~ 70664813 (+)
G1104842 NA non-coding upstream 29033 69876253 ~ 69878388 (+)
G1105120 NA non-coding upstream 36111 69871018 ~ 69871310 (+)
G1104856 cdk12 non-coding upstream 119004 69787294 ~ 69788417 (+)
G1104843 NA non-coding upstream 189139 69685230 ~ 69718282 (+)
G1104841 NA non-coding downstream 1520 69936898 ~ 69937341 (+)
G1105173 NA non-coding downstream 40212 69975590 ~ 69976435 (+)
G1105198 LOC106607285 non-coding downstream 102030 70037408 ~ 70041331 (+)
G1105197 NA non-coding downstream 120662 70056040 ~ 70058980 (+)
G1105291 NA non-coding downstream 247923 70183301 ~ 70183868 (+)
LOC110538155 LOC106600992 other upstream 589773 69315451 ~ 69321518 (+)
G1104162 NA other upstream 1375560 68528281 ~ 68531861 (+)
G1104149 LOC106600798 other upstream 1402126 68504041 ~ 68505295 (+)
G1103416 eif1b other upstream 1898944 67987694 ~ 68048717 (+)
G1105194 NA other downstream 87330 70022708 ~ 70048987 (+)
G1105281 NA other downstream 227311 70162689 ~ 70194672 (+)
G1105357 NA other downstream 389580 70324958 ~ 70327126 (+)
G1105393 NA other downstream 435377 70370755 ~ 70371211 (+)
G1105467 LOC106601028 other downstream 676925 70612303 ~ 70633971 (+)
G1104859 NA non-coding upstream 223368 69689362 ~ 69690223 (+)

Expression


Co-expression Network