LOC110539166 (LOC106601013)


Basic Information

Item Value
gene id LOC110539166
gene name LOC106601013
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 69965506 ~ 69967488 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021626127.2
GGTGTGAACCCAGACATGATGCGCCTGATCATCGAGTATGCCTACACACGTTCTGTGCCTGTGACTGCAGAGAATGTAGAACCACTCCTGGCGGCTGCAGACCAGTTCTGCATCCTGGGGATCGTGAGGGCCTGCTGCGACTATCTGGAGGCCCAGCTCTGTCTGCAGAACTGCATCGGCATCTGCAAGTTTGCGGACTTCTACTCCTGCCCTGATCTGCGCCGCCGGGCCTACCTCTTCATCCTGCACCACTTTGAGATGGTGCGTTTCTCGGAGGAGTTCATGGAGCTCTCTCTGGCACAGCTCTGTGACATCATCGAGAAGGACGACCTGAATGTGAAGCAGGAGGATGTTGTGTTTGAGGCGGTCCTACGCTGGATCAACCACTCGCCTCAGGACCGCAAGGCCCACGTCTCTGTGCTGCTGCCCAAGgtcCGCATGTCCTTGATGACAGCCGACTACTTCATGAACAATGTGAAGAACAATACCCTGGTGAAGGACAATGATGACTGCAAGCCTATCATCATCAGTGCCCTGAAGGCCATGTACGACCTGAACATGAACGGGCCCTCCAACACTGACTTCCGCAACCCTCTGACCCGCCCACGTCTGCCTTATGCCATTCTATTGGCCATCGGTGGCTGGAGCGGTGGCAGCCCCACCAATGGCATTGAGGCGTATGATGCGCGGGCTGACCGGTGGGTGAATGTGACCCGGGAGGAGGAGAGCCCTCGAGCCTACCATGGAGCTGCTTACCTCAATGGCTTTGTCTACTGTGTGGGTGGCTTTGACAGTGTTGACTACTTTAACAGTGTACGTAAGTTCAACCCTGTCACACGGACCTGGCACCAGGTGGCCCCCATGCACTCGCGGCGCTGCTACGTCAGTGTGGCGGTGCTGGATGGCTGTATCTATGCCATGGGTGGCTTTGATGGTTACGTACGACTGAACACCGCTGAGTGTTATGAGCCTGAGACTAATCAGTGGACCCTGATTGCACCCATGCATGAGCAGAGGAGTGATGCCAGTGCTACCACACTACATGGCAAGGTGTACATCTGCGGTGGCTTCAATGGGAATGAGTGTTTGTTCACAGCAGAGAGTTACAGCCCCCAGACCAACCAGTGGACTCTGACCGCCCCCATGAGAAGCAGGCGCAGTGGTGTGGGGGTCATCGCCTATGCAGAGCAGGTCTATGCGGTTGGCGGCTTCGATGGGGCTAACCGCCTGCGTAACGCTGAGGCCTACAACCCGCTGACCAACACATGGCGCACGGTGCCCACCATGTTCAACCCGCGCAGCAACTTTGGCATTGAGGTGGTGGACGACCTCCTGTTCGTGGTGGGGGGCTTCAATGGCTTCACCACTACCTTCAACGTGGAGTGCTATGACGAGAAAACAGAGGAGTGGTACGACGCCCACGACATGGGCATCTTCCGCAGTGCCCTCAGCTGCTGCGTGGTGCACGGGCTGCCCAACGTGGCCCAGTACGCAGCCCCCCGGGACTCCCTCCAGTCCCCCCGGGAAGAGCTGAAGCTCTCCGCTTCCAACAGCATCCTGTCTGTGTGACGTCCCCTCGCCCCTATCCCCCACCCTTACCCCTTCCTGCCCACCGTATCCCACTTACCACTGGCATTTATCATGCGCAAATAAATCCACTACTGCATGTCCCAGAGGAAATCCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021626127.2 True 1684 mRNA 0.58 4 69965506 69967488

Neighbor

gene id symbol gene type direction distance location
LOC110538177 LOC106607277 coding upstream 7986 69952422 ~ 69957520 (+)
LOC110538175 LOC106601009 coding upstream 30128 69907421 ~ 69935378 (+)
LOC110538173 LOC106607273 coding upstream 90476 69823215 ~ 69875030 (+)
LOC110538170 LOC106601006 coding upstream 145689 69799674 ~ 69819817 (+)
LOC110486238 LOC106607270 coding upstream 230201 69730257 ~ 69735305 (+)
LOC110538185 kbrs2 coding downstream 77097 70044585 ~ 70048245 (+)
LOC118937908 NA coding downstream 414681 70382169 ~ 70382221 (+)
LOC110538197 LOC106601026 coding downstream 673476 70640964 ~ 70664813 (+)
LOC110538199 LOC106607392 coding downstream 766751 70734239 ~ 70736353 (+)
si:ch73-141c7.1 LOC106601031 coding downstream 778047 70745535 ~ 70750237 (+)
G1104841 NA non-coding upstream 28165 69936898 ~ 69937341 (+)
G1105129 NA non-coding upstream 28991 69891218 ~ 69936515 (+)
G1105148 NA non-coding upstream 48460 69916673 ~ 69917046 (+)
G1104842 NA non-coding upstream 87118 69876253 ~ 69878388 (+)
G1105173 NA non-coding downstream 8102 69975590 ~ 69976435 (+)
G1105198 LOC106607285 non-coding downstream 69920 70037408 ~ 70041331 (+)
G1105197 NA non-coding downstream 88552 70056040 ~ 70058980 (+)
G1105291 NA non-coding downstream 215813 70183301 ~ 70183868 (+)
G1105304 NA non-coding downstream 245799 70213287 ~ 70213629 (+)
LOC110538155 LOC106600992 other upstream 647858 69315451 ~ 69321518 (+)
G1104162 NA other upstream 1433645 68528281 ~ 68531861 (+)
G1104149 LOC106600798 other upstream 1460211 68504041 ~ 68505295 (+)
G1103416 eif1b other upstream 1957029 67987694 ~ 68048717 (+)
G1105194 NA other downstream 55220 70022708 ~ 70048987 (+)
G1105281 NA other downstream 195201 70162689 ~ 70194672 (+)
G1105357 NA other downstream 357470 70324958 ~ 70327126 (+)
G1105393 NA other downstream 403267 70370755 ~ 70371211 (+)
G1105467 LOC106601028 other downstream 644815 70612303 ~ 70633971 (+)

Expression


Co-expression Network