LOC110538198 (LOC106601029)


Basic Information

Item Value
gene id LOC110538198
gene name LOC106601029
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 70671846 ~ 70687807 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624852.2
ATGTCACAGCGTCACTGAGAAAGCCTGGCCCTGAGATAGAGCTCAATTTTGGGACTGTCTATCCACACGCAAACCAACATACCGCGCTTGTCTTGATTACAGCTGCGGTGTATTACCAGTTCCTTCATATTTGAATGATTAATCTTTCTATTTCTTGTCAGTCAACGTCTATTTCTGAGGGTCACAGAATTCACCTGGGCATTTTTTTGTGCTGAGAAGTTTGCTGTTCTATTACAACATATTTTTCTCTTAATttatcttcctctgtattttttgTGATGAAATTAACTTGAACGTATAGAACAGCAAATATAACTTCTGTCAAGGAAATATATTTTATCACCTCTCTCCAAACGGACTGCGAAGCAATGATGAACAAGAACGGGATGGTGACAAAAATTCACACGAGAATTAGGACCGATCCTTTCACGAGCAATTATGAGTTGCTTGGCAGAGAATTGGGCAGgGGAAAGTTTGCTGTGGTGAAGAAGTGCATTGAAAAGGCGACAGGGAAGGAGCACGCTGCCAAGTTCTTGAGGAAGCGTCGGAAGGGCGAGGACTGCCGCATGGACATCCTCAACGAGATCGCTGTTCTGGAGTCAGCCAAGGCTAACCCTTATGTGGTGGCGCTGCATGAGGTCTACGAGACCAACTCTGAGATCATCCTCATCCTCGAGTGTGCTGCCGGTGGAGAGATCTTCAACCAGTGTGTTGCGGAGAACGACGAGGCCTTCACAGAGAAGGATGTGATCAGGTTGGCCAGACAGATCCTCACCGGCGTGGCCTGTCTGCACAGCAACAATGTGGTCCACTTGGACCTGAAGCCCCAGAACATCCTGCTGACCAGTGCCATCCCACTGGGTGATATCCGCATCGTGGACTTTGGCCTGTCCAGAAGCATGGACAGTGTGACAGAAGTCCGAGAGATCCTGGGCACCCCGGAGTATGTGGCTCCAGAGATCCTGAACTATGAACCCATCAGCATAGCGACAGACATGTGgTCCATAGGGGTCCTGACCTACGTCATGCTGACGGGCGAGTCTCCGTTCCTGGGGGACAACAAGCAGGAAACCTTCCTGAACATCTCCCAGGTCAACGTGGACTACTCCCAGGATGCCTTCGAGGGCGTCTCCTCCCTCGCCATTGACTTCATCAAGACCCTGCTGCTCAAAAACCCCAGGAAGAGAGCCACTGCAGCGGAGTGCCTTAACCACCCCTGGCTGACTGGACCAGCTTCCCTCTACACCCAACTCCACGCCAGCTCTCTACCCTCATTGGACGAGCCTGAGACCAGCCAATCAGAGTCTGAGCCTGAGAGCCCGGCACCCTCCCCAGAGCTGGAGAGCATGGGTTCGTACCTGATATGCCCCGGTCAGGTAGACCTGAAGACAGGCCGCAATGCCTTTTCCTTCACTTCTGAGCCCTTCCCCGCACTGCCAGAGATCCAACAGGAGCTCATCTGCTGAGGAAGGGCTCCACTAGACACTGTGTGTAGTGACTGACTGGACTGCTGTCACAGAATGGACACTGTCTGGAAGCCAGTGAGACCTGGTCTGGTCCGATGCAGGGCCTCCAGCTCTGTTTGACTCTGTATgtgtgctgctgctactgctgcgaTGGATGTGAAATCTGTCTGAGCTCAGCTGACCGTGTGCAGTAAATCCATGCGTGTTTGATGCATGTTACCCTGTGCTGATAGTGTGCTGATGCGTGGCGTCTGGTAATGAGCCACACTGACACACTTTAATGCATGTGTAGCGAGGGTACTGTAACTGTATGAGTGCTGTGAATGGAAGGAGTGGGCCAGTTCTTTGTGCTCGGCTATGAAGACTAGAACAGTGGGACTGACTTCATCCATCACTTGGTCTGGTCTGCACTCTCAGTGAAGGAAGTCCTGCTTTGTCCCAGGCTGGGTTGATCCCTTGTTGGCTCTCACCTTGGCTGCCCTTCATGTTCCACTCCCTCACCGACCTTTGAACCAGGACTTCGCCTCTCCTTTGTGAGGATGTAAATGCTGAGAGGAAATGACGTTGGCCAACAGGAAGTTGGAACCACTTTGCTTTTTGTTGAGGTCTGAACCTTATATGCCTTTCATGATGTTGATTATGAAGGATGCCAATGTGGTTAGACAGATGTCCCTAGATGAGATGCTGCCTAGGCATCAAAGGAAAACTGACTGACTGTGTTAGGGGAGTGCCCTCACAGAAACCAGTCAGAAGGGTTAAATCGTCTTCTCTGATTTTGTTTGTGTTCATATGACCACTTCAGGCCTCCAAACATAGAAAGCCATCTCAATCACCACATCTAATTAAATCACATCCTTTGTTTAGTGTAAGGACAATCTTGATGTCAATTTAAAGcactttttattttaaaaatgaacTACACAAATGATCAAAGTATTAACCAAAGTCTTGATGAAATGGCTCAAAAAGCACAGTTTAGTTGAATGATTAATTAAGACACAAATGTACATGGCCACTTCCCACCATCTGTTGTTCATATATTTGCATCACCTGTTTCCACCAAGTGCCATATAGTTCACCTGCTGTGTTGATGTTTCTGTTTATTCTTGTaagatttttgttgttgctattgtTGCACAATTTCCATGTACTCATGTTTGAAATATCAGTTTGCCATATTGGATATGTCACAATATATTTCCCTTCAGGCTTTGTGAACAGATGTCTTTTTGAAAGGAAGTGACTAGGATTCAATAATGTCACAATTTTGAATTGTGGCGTTTAATGACAGTTCAATGAATTGCAACCAATTGAAAGGCTTTGAAGAAAGCTCATTTTGGATATGTGGTGTTTGAGAGTGAAGAGAAATTACTCTTGAGGACTTCTCAAAAATGACTGAAGTGTGTATTGTTTGATAGTGTAAGAATAATCTGTAAAATATTTTAAGATCATAATGTATGAACATTTTAATAATTATTGtataactctttttttttttcttttcttttttttttatctcgaCTCTGTACTTGTGACTTTCATTCCTGGTTACTGCTCATGAATTTCAGGCAGGTTTGCACTTGTGTCCAGGTGGACGTTACATTGAAATTAATAAATGTTGATGGCATGCCTTGCAAAAATGTATCGAAGAAcaataaatgtacattttgtattAAACTATTCATCTTGA

Function

NR:

description
serine/threonine-protein kinase 17A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624852.2 True 3156 mRNA 0.46 7 70671846 70687807
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110538196 LOC106601028 coding downstream 37849 70612291 ~ 70633997 (-)
LOC110538194 LOC106601025 coding downstream 61877 70587166 ~ 70609969 (-)
LOC110538192 sta5b coding downstream 102827 70475743 ~ 70569019 (-)
LOC110538191 LOC106601024 coding downstream 206933 70375985 ~ 70464913 (-)
hcrt LOC106601048 coding downstream 299895 70370066 ~ 70371951 (-)
LOC110538202 LOC106601032 coding upstream 70112 70752569 ~ 70775014 (-)
LOC110538204 LOC106601035 coding upstream 112560 70800367 ~ 70804955 (-)
LOC110538206 LOC106601037 coding upstream 131356 70819163 ~ 70827825 (-)
LOC110538207 LOC106607308 coding upstream 217307 70905114 ~ 70935673 (-)
LOC110538211 LOC106601043 coding upstream 322239 71010046 ~ 71016433 (-)
G1107222 NA non-coding downstream 3760 70667861 ~ 70668086 (-)
G1107213 NA non-coding downstream 18126 70653150 ~ 70653720 (-)
G1107210 LOC106601026 non-coding downstream 19035 70649873 ~ 70652811 (-)
G1107195 NA non-coding downstream 48955 70622515 ~ 70622891 (-)
G1107186 NA non-coding downstream 85835 70585763 ~ 70586011 (-)
G1107312 NA non-coding upstream 174367 70862174 ~ 70862437 (-)
G1107313 NA non-coding upstream 174712 70862519 ~ 70862841 (-)
G1107380 NA non-coding upstream 290347 70978154 ~ 70978376 (-)
G1107381 NA non-coding upstream 290769 70978576 ~ 70978837 (-)
G1107004 NA other downstream 434245 70237094 ~ 70237601 (-)
G1106634 NA other downstream 1174884 69496640 ~ 69496962 (-)
G1106463 rl19 other downstream 1502958 69166461 ~ 69168888 (-)
LOC110538128 LOC106600798 other downstream 2167940 68495125 ~ 68517925 (-)
LOC110538106 wipf2 other downstream 2806204 67860396 ~ 67867954 (-)
G1107481 NA other upstream 456848 71144655 ~ 71147165 (-)
G1107536 NA other upstream 624452 71312259 ~ 71313001 (-)
nudt1 8odp other upstream 958991 71646624 ~ 71648371 (-)
G1108159 NA other upstream 1449886 72137693 ~ 72138603 (-)

Expression

LOC110538198(LOC106601029) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
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LOC110538198(LOC106601029) Expression in each Bioproject

Bar chart with 21 bars.
LOC110538198(LOC106601029) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network