LOC110538209 (LOC106601040)


Basic Information

Item Value
gene id LOC110538209
gene name LOC106601040
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 70984731 ~ 70986552 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624865.2
CTCTCGTTCAAAAGTATGCCTTGTTTTCTGTGTTCCGTGCCACACCTGTGTTTGTGCACGAACACGCAAAAGTGTAATCGGAGTAGGCGTGACTTCAGCcaattcctcctctcctccaccagtctgggGAAACACAAATCTACTCTACTCTGCCTGACACAACTGGAGTTTTCTGAACTTAGAAGACCAGCCAAGATGCCAGAGAACGCAGAGGCCGTTTCAGCCACTCTAACCACCAACAGGAACTGTACTATAGAGCTCACCAATGTCACCACCGGTTACTGTCTCATCAACCCCAAGGTGTACATGTCCAGTGGTTTCTGCTACCACCCACCCCAGCCCACCGTCCGCACCACCAAGACAGAGGTGTGTTCCTTCACCAAGGATGACGACACAGCCACGGGCGCCGTGGGGGTCCTGACCTACGACCTTTTCCACATGCAGAGCCGCGTGTGCTCAGAACGCATGGCCATCATGTTCTCCGTGCCCTACGACTACAACTTCTACAAGAACTGGCTAGGGGTGGGCGTCTTCGAGGTGGCACGCGCCTGCGACAAGCAACTGTACAACCACATGTACAAGGAAAAGGACTTCAGCAAGTTTGTCCGATCAGAGGCCAGTGGGTCAGGGGTGGAATACAAGGCCCAACACGTAGACCTGAGGGCCACCATGTCCAATGTTGGGAAGTCCATCATTAAGGTGGAGCTCTATGATAAAATGGGGCACTAATAAGACAAGCTGGTAGCTGAGCCATTTTTCCAACTCACAGCAGGGAAACAAATTTATATTGATACATAATCACGTACTAAATATAAGAATGAATGAATCAACCAACGTAGGTGGTTAATGTTATCCAATGAATAAATCTTTATCAAATGGAAGATATTACTGTCTAATTGTTCACAATATTTGATTCTGTGTCTTTTTCTACACCTGTACATGTTTGTTTTAATAAAACGCTTAAAAATGAATTGG
>XM_021624866.2
CACGAACACGCAAAAGTGTAATCGGAGTAGGCGTGACTTCAGCcaattcctcctctcctccaccagtctgggGAAACACAAATCTACTCTACTCTGCCTGACACAACTGGAGTTTTCTGAACTTAGAAGCTTTTTCCCCCCTCTATCTCGCTCAGACCAGCCAAGATGCCAGAGAACGCAGAGGCCGTTTCAGCCACTCTAACCACCAACAGGAACTGTACTATAGAGCTCACCAATGTCACCACCGGTTACTGTCTCATCAACCCCAAGGTGTACATGTCCAGTGGTTTCTGCTACCACCCACCCCAGCCCACCGTCCGCACCACCAAGACAGAGGTGTGTTCCTTCACCAAGGATGACGACACAGCCACGGGCGCCGTGGGGGTCCTGACCTACGACCTTTTCCACATGCAGAGCCGCGTGTGCTCAGAACGCATGGCCATCATGTTCTCCGTGCCCTACGACTACAACTTCTACAAGAACTGGCTAGGGGTGGGCGTCTTCGAGGTGGCACGCGCCTGCGACAAGCAACTGTACAACCACATGTACAAGGAAAAGGACTTCAGCAAGTTTGTCCGATCAGAGGCCAGTGGGTCAGGGGTGGAATACAAGGCCCAACACGTAGACCTGAGGGCCACCATGTCCAATGTTGGGAAGTCCATCATTAAGGTGGAGCTCTATGATAAAATGGGGCACTAATAAGACAAGCTGGTAGCTGAGCCATTTTTCCAACTCACAGCAGGGAAACAAATTTATATTGATACATAATCACGTACTAAATATAAGAATGAATGAATCAACCAACGTAGGTGGTTAATGTTATCCAATGAATAAATCTTTATCAAATGGAAGATATTACTGTCTAATTGTTCACAATATTTGATTCTGTGTCTTTTTCTACACCTGTACATGTTTGTTTTAATAAAACGCTTAAAAATGAATTGG

Function

NR:

description
bryoporin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624865.2 False 975 mRNA 0.47 3 70984731 70986552
XM_021624866.2 True 945 mRNA 0.48 3 70984787 70986552

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-56 NA coding upstream 76167 70908489 ~ 70908564 (+)
LOC110538205 LOC106601037 coding upstream 165557 70807167 ~ 70827806 (+)
LOC110538203 LOC106601033 coding upstream 226565 70756654 ~ 70758166 (+)
LOC110538201 LOC106601034 coding upstream 230186 70752514 ~ 70754545 (+)
si:ch73-141c7.1 LOC106601031 coding upstream 234494 70745535 ~ 70750237 (+)
LOC110538210 LOC106607311 coding downstream 574 70987126 ~ 70991795 (+)
LOC110538212 LOC106601045 coding downstream 34710 71021262 ~ 71039796 (+)
LOC110538213 LOC106601140 coding downstream 104742 71091294 ~ 71147182 (+)
LOC110538215 LOC106601138 coding downstream 180667 71167219 ~ 71182790 (+)
LOC110538217 hop2 coding downstream 196462 71105931 ~ 71187785 (+)
G1105735 NA non-coding upstream 6151 70978373 ~ 70978580 (+)
G1105715 NA non-coding upstream 33005 70951499 ~ 70951726 (+)
G1105710 NA non-coding upstream 41288 70943177 ~ 70943443 (+)
G1105686 NA non-coding upstream 84908 70899370 ~ 70899823 (+)
G1105685 NA non-coding upstream 85748 70898719 ~ 70898983 (+)
G1105751 NA non-coding downstream 13019 70999571 ~ 70999772 (+)
G1105744 LOC106601043 non-coding downstream 23504 71010056 ~ 71016479 (+)
G1105743 LOC106607314 non-coding downstream 59029 71045581 ~ 71046167 (+)
G1105766 LOC106601056 non-coding downstream 62250 71048802 ~ 71049028 (+)
G1105767 LOC106607314 non-coding downstream 62655 71049207 ~ 71049475 (+)
G1105655 NA other upstream 78302 70902905 ~ 70906429 (+)
G1105467 LOC106601028 other upstream 350760 70612303 ~ 70633971 (+)
G1105393 NA other upstream 613520 70370755 ~ 70371211 (+)
G1105357 NA other upstream 657605 70324958 ~ 70327126 (+)
G1105281 NA other upstream 790059 70162689 ~ 70194672 (+)
psmg3 psmg3 other downstream 954999 71941515 ~ 71942804 (+)
LOC110538241 LOC106607115 other downstream 1031041 72016045 ~ 72019145 (+)
G1109505 NA other downstream 2318873 73305425 ~ 73306154 (+)
LOC110538462 rpc11 other downstream 2398256 73384755 ~ 73386199 (+)
G1109778 NA other downstream 2847091 73833643 ~ 73834606 (+)

Expression


Co-expression Network