LOC110538218 (LOC106601135)


Basic Information

Item Value
gene id LOC110538218
gene name LOC106601135
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 71199101 ~ 71220435 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624885.2
TTTCTTGTTATGCGGTTTCTGCCTTTGTTGCAACGACTGCGTCAaactcccctctccttcctgtaACACCCGTGCCCCGCCTGTCTGTGATGAGCTCACTGTAGGAACTATGAACAATTAAATAGTAAAAACAACATCTTGCTTCAACAGGCGCCACTTTTCAGGTTTCAACTTGTTCCGATTTTTTTTCCTAGTAACACCTGTTGTCCGGCCGAGAGTGAGGACAGTGGAGGAGATACGGGATTAGGAGGAAAGATGTTGCTCCATCAAACATCCTCACCTCAGGACCAAGACAATTGCAGTAGGCCAGTGACTGTTCTATCCACCCGCCTAATCTCCCAGAGACGTTGAAGGACCAAGGACTCCAAGACCTGTTTTTTATTCACCTTCTCTTTTTCTGGGGAAATTCATTGGACTGCCCTACATTGGAACTAACTAGATACTTTTTTCAGTGTGGACAGGTTTGCAGACATCTGCGTTGGAGTTTCAGTCTGTTTTGGAGTTAGGCCTATTAGCACTTCCAGATAAAAAGTGTCTTTTAACCTTTCCCCTGGATTACCTGTTCAGGTTGGTGATGGGGAACGCGGCGGGGGGAATAGAGCAGGCAGATGACAGGGAGGCCAAGCACTCTGTGGGGTCAGGAACGGGCCTGAGTGACCCCACCCCGACCCTGCAGAAGAAGCAGCCTGCTCCCCCCAAGCTGCCCGTGCCCCCAGAGGACGAGCTGGAGGAGCGCTTCAGTGTGGTTCTGAGCTATATGAACTTGCCTCCAGACAAGCTGAAACTGTTGAGTCAGTATGACAATGACAAGAAGTGGGAGCTGATCTGTGATCAGGAGCGGTTCCAGGTGAAGAACCCTCCCTCTACCTATCTGACCAAGATCAAGAGCTTCTATCAGGACCAAGGAGGAGTGACCCGCAGGTTCAAGAGGCGGGTCCAGGAGTCCACCCAGGTATTGAGAGAGCTGGAGATCTCCCTCCGTACTAATCATATTGGCTGGGCCCAGGAGTTTCTGAATGAGGAGAACCAGGGTTTGGATGTACTGGTGGATTACCTGTCCTACGCCCAGTGTGACGCTTCGTTTGACTTGGAGGGTGCTGAGAATGGGGGAACACTGTCAGAGAGAGGGAAGCCAGCGGAGAGGTCCATGGAGGACCTGAATAAGAGTGCAGGAAGCTCCCCTACACACGGCATGACCAGAGCAGCCCGCGCCCTGACCGTACGAATAACCTCTCTGGCCCAGAGTAGGAGAACTCAGAAGATCTCTCGATTGGCCAGTCAGAGGGACGACGTCCATGTGTGCATCATGTGTCTGCGTGCCATCATGAACTaccagTCGGGCTTCAACCAAGTTATGACTCACCCACGCTGCGTCAACGAGATCACTCTCAGTCTCAACAACAAGAACCCCAGAACCAAAGCCCTGGTGTTGGAGCTGTTGGCTGCTGTGTGTCTTGTGAGGGACGGTCATGACATCATTCTCGCCGCCTTCGACAACCTCAAGGAGGTGAGCGGAGAGAAGAACCGCTTTGAGAAACTGATGGAGTACTTTAGCAACGATGACAGCAACATTGACTTCATGGTGGCCTGCATGCAGTTCATTAACATTGTGGTGCATTCGGTGGAGAATATGAACTTCCGTGTGCACCTGCAATATGAGTTCACTCACCACGGACTGGACCAGTACCTAGAGtctctgAAGCTGACGGAGAGTGAGAAGCTGCAGGTTCAGATTCAGGCCTACCTGGACAACGTGTTTGATGTGGGGGCTCTGCTGGAGGATGCAGAGAACAGGGGTGGGGTGCTGGAGCATGTGGACGAACTGCGGGAGCACAACTCGCAGCTGAGTGCCAGGCTAGAGGAGATTGAGAGCCAGTCTGCAGAGAGGATGGCTGAACTGGAGAAACAGCTCCTCCAAGCCACCAAGGAGACAGAGCTGCTCAAGGAGAGCCTGCGGGACTCCTGTTCCCAGGTCAGttctctgcagcagagagagagggagagggagatgagccAGGAGAGGGAGCGGGACAGAGAGCGTCTAAGCCAGCCCTCCTCTGAGCTGGAACTCAAGGTGCAGGAGCTGCAGGAGCGAGGGCTGATCCGCTTGGGACGCACCCCCTCTGGGGCCCTAGACCTCCAGGTGGTGCCTGTCACCATCATCGAGTACGCCCCCGCCCCAGCCTCTGAGCCCCTGCTCAGCTCCACTGGTCCCACTGCCCCTGGCCTAGACGTCCCTGATGCCACTCCCTCCTCAGCCATCTCTtctgtcccccctcctcctccccctccacctcctgggCCTGGTGGACCTgctcccccaccccctccaccacctcctcctcctctcccacatgGCTCTGGTggcccacctccccctcctcctccccctcctcccggTGGAGGTCcgcccccacctcctcctccacccggcGCTGGTCCTCCGCCCCCACCAGGAGGCCCACCTTCTGGAGACAGCCAAGCCGgAGGTAAAAGCAGGAAACCCATCCAGACTAAGTTCCGGATGCCTTTGCTCAACTGGCAGGCCCTGAAGCCCAACCAGGTGACTGGCACGGTCTTCCACGAGCTGGACGACGAGCAGGTCTTAGGGGAGCTGAACATGGAGGCGTTTGAGGAGCAGTTTAAGACCAAGGCCCAGGGTCCTCCAGCAGCTCTGTCCACTCTTAAGGTCAAGGTGGCCCAGAAGGCCCCCAGCAAGGTCAACCTGATCGAGGGCAACAAGGCCAAGAACCTGGCCATCACGCTACGCAAGGGAGGCAGGAGCCCCGCAGACATCTGCACAGCTATAGAGACgtatGACCAGCAGGCGTTGGGGCTGGACTTCCTGGAGCTGCTGGAGAGGTTTGTCCCGTCAGACTACGAGCTGAAGCTCCTCCAGAACTATGAGAAGGAGGGCCGTCCGCTGGATGATCTGGCAGAGGAGGACCGCTTCATGATGCGCTTTGGGAAGATCCCCCGTCTGGCCCAGCGAATCAGCACCCTCACCTTCATGGGCAACTTCCCCGAGAGCGTCAAACGTCTGCAGCCGCAACTGAACTCCATGATCACAGCATCCATGTCCATTAAGTCCTCGGCCAAGCTGAAGAAGATGTTAGAGATCATCCTAGCCTTTGGGAACTACATGAACAGCAGTAAGAGGGGTGCAGCCTATGGGTTCCGCCTGCAGAGTCTGGACCTGCTGCTGGACACCAAGTCTACTGACCGGTCCCAGACCCTGCTACACTTCATCTCCAGCATCGTCCAGGAGAAATACCCCGAGCTCAATAACTTCCACACTGAGCTGCACTTTGTGGACAAGGCTGGCCTAGTGTCTCTGGACAGTATTCTTCAGGATATCCGCTCTctggagagaggaatggaagtGACCAAGAAGGAGTTCCTGGTGCAGGAAGACAACACAGTGCTGAAGGACTTTGTCAAGACAAACAGTGAATTACTGGACTCATTACTCAAAGACAGCAAGACCGCTCAGGAGGCGTATGGCTCGGTGGTGGAGTATTTTGGAGAGAACCCCAAGACCACACAACCCTCCATGTTTTTCCCTCCGTTTGTCCGCTTCATGAAGGCCTATAAGCAAGCAGAGAAGGATAATGAACAGAAGAAGAGACTGGAGGCCCAGAGCAGTGAGATCCAAGCAGAGTCTCCCTCCCCTAGAAAGAAAGAGGCTGCAGGACACAAGTCTCCCATGATGCCCAAGATGGACCTGATAGCGGAGCTGAAGAAGAGGCAGGTGAAGCCTCAGGTGAAGGATGGGGCCCTGGAGGACATCATCACAGACCTGAGGAACTCACCGTTCAGAGCAACAGATGGACGGAGACCAGCACAGCGTCAAGACACCTGAACAACCCCAGCCCCGAGACCCCCCAGCTCCACTGAGATGACTGTACACACCCGATGTCAAAGTGTGTGCATACACAGAACACAAATATATAcctgtactgtacatacacaatACACCTACATTAGTACTGAAGATTATATGGCCTTTTACCTAACAACACACATTTAAACAACAGTATGAATTGACTCTGTAAATAGAACAGAGTTTAAGCTATACGTCATGAGCAAATGTGTAACATAGAAATACATTGGTGCGTTTTTATCCATTTAGCTTTTTAAAATAACTTTGAATTTTTTGTTTTCCCGTTCATCTTTGAATgagtacatttttaaaataataaaaaaacaagatT

Function

NR:

description
formin-like protein 1

GO: NA

KEGG:

id description
K17971 BNR1; BNI1-related protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624885.2 True 4214 mRNA 0.54 25 71199101 71220435

Neighbor

gene id symbol gene type direction distance location
LOC110538217 hop2 coding upstream 11316 71105931 ~ 71187785 (+)
LOC110538215 LOC106601138 coding upstream 16311 71167219 ~ 71182790 (+)
LOC110538213 LOC106601140 coding upstream 51919 71091294 ~ 71147182 (+)
LOC110538212 LOC106601045 coding upstream 159305 71021262 ~ 71039796 (+)
LOC110538210 LOC106607311 coding upstream 207306 70987126 ~ 70991795 (+)
LOC110538220 LOC106607322 coding downstream 160773 71381208 ~ 71384698 (+)
LOC110538222 LOC106607324 coding downstream 202603 71423038 ~ 71431846 (+)
LOC110538226 gosr2 coding downstream 219569 71440004 ~ 71447266 (+)
LOC110538227 LOC100380862 coding downstream 267221 71487656 ~ 71506845 (+)
LOC110538230 rs11 coding downstream 291411 71511846 ~ 71514863 (+)
G1105803 NA non-coding upstream 718 71192549 ~ 71198383 (+)
G1105778 NA non-coding upstream 101313 71064287 ~ 71097788 (+)
G1105791 NA non-coding upstream 109822 71088841 ~ 71089279 (+)
G1105777 NA non-coding upstream 135910 71062969 ~ 71063191 (+)
G1105838 NA non-coding downstream 13266 71233701 ~ 71234085 (+)
G1105865 NA non-coding downstream 62306 71282741 ~ 71345620 (+)
G1105888 NA non-coding downstream 104460 71324895 ~ 71332360 (+)
G1105941 NA non-coding downstream 188239 71408674 ~ 71408972 (+)
G1105943 NA non-coding downstream 200776 71421211 ~ 71421415 (+)
G1105655 NA other upstream 292672 70902905 ~ 70906429 (+)
G1105467 LOC106601028 other upstream 565130 70612303 ~ 70633971 (+)
G1105393 NA other upstream 827890 70370755 ~ 70371211 (+)
G1105357 NA other upstream 871975 70324958 ~ 70327126 (+)
G1105281 NA other upstream 1004429 70162689 ~ 70194672 (+)
psmg3 psmg3 other downstream 721116 71941515 ~ 71942804 (+)
LOC110538241 LOC106607115 other downstream 797158 72016045 ~ 72019145 (+)
G1109505 NA other downstream 2084990 73305425 ~ 73306154 (+)
LOC110538462 rpc11 other downstream 2164373 73384755 ~ 73386199 (+)
G1109778 NA other downstream 2613208 73833643 ~ 73834606 (+)

Expression


Co-expression Network