LOC110538254 (snn)


Basic Information

Item Value
gene id LOC110538254
gene name snn
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 72283033 ~ 72285611 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624963.2
CTAGTGTATTTAACACACTGCATTAGCATTTTTTTTAGAATGAAATCGGTTCCTTTAGGAAGAGCCATGGATTTTATATGTTTGATACAGGCAGGGCTGTTGCTGCATAGCACATTGCACATTGATGAAGACACGCGATCGCGTCGTCTGTCTTAATGGAATTGGAAGGAATCTCATCTAGTCTCCCAAGCAGTACCGTAAGACACCAAAATCAGCAAGGGATCACACCACGCTGTCCTTGTCAAGTACCCTGTTCTGTCACAATGCTCTGATTCACCTTCCCGTTGCAACATGTACATCACAGACCACAGCCCAACTACTGGGGTGGTGACAATCGTAGTGATCCTCATTGCTGTTGCTGCCCTCAGTGTTCTCATCTGCGGATGTTGGTGCTACCTGCTCCTGCAGCGGATTGGCCAGTCTGAAGATGAGGAGAGTATTGTAGGAGAGGGCGAGACCAAGGAGCCCTTCCTGATGGTACAGTACTCCACCAGGGGCCCTCACGTCGAGCACAAAACCAAGCTCGCCCACAAAGGCACTGAGAATCACACTTAACTGAGTCATTAAGAAACTGTGTCATCACCTAATATTAACCAAGAGGATCACCTCATTCACATTTCCTGCTGATCATCATCTTTCATCGTGCCATTGAAGGATGATAAACGGACTGCAGCTCAATGTCTTATgaggaaatgtgatatttttgtttCTCATTCCATTGTGTGGATCTCAGGATGTGAGGTTGTGAACAGTTCATTGTTAGGTTTCTTAAGTATACATATTTTGAACAAAAAAATGTACATCTGATTGATGTTGATAGTTTTTGTTAACTCAGCAATCCACTACTGAATTGTGACGGTAGACAGCGCTCTGAACAAATGAGTGGGCAAAACCTTCTTCAGAGCTTGTTGGAAGAATGTATGACAAATTGATGTCAAAACAATTTACTTAATATCAAGTTGCTCAAATTATTTGAAATTTGcttaatttgtttgtttgttttgcatAGTTGAACTTGGTTTTATTTACCTTCAGTATTCAAATGTGAGTTAATAGCCATTTTAATAATTTGCTAAATGCCAGATTTGCCCGAAGATAAAAAAGTGTGATTCACTCCCTAGTTTATGTCTGTTGTCGCTGCTACTTACTAAATAATCTAGTGTACAAAATACTGTTTAttttctccagtgattgcacagaTAACCACTGAAATAAAACCAGTCATTGAAAGGGCAATTCTCCTTTGATAAACCATCACATTTCACAAGCACAACAAGGTCCCGGGTCTGAGTTTTAGTGAGGTTCGCACTCTAAAATactatttggagaacagcaaaaaatgtggccatgattactacacatttagatagctggctagactaatttaacaatcacaaaaaaaaattgacatgggctaattgagtgacagtCAGTGAGTGACATATAAGAAGAGGGAAACTGCTGATTCACAACCAggttcgaaattgcaccttgtttattttactattctaactctcaaaagTAAGTTGAAACCCCAACTGTTACTAAAAACATTAtagattattatatatttttttaatgttggCAAGGTCGGTACCTAGGTGTCCTCATTTGTAGCTACAACACTGAGTAGCTGCTACAACTGACATGGGTTGAGGAGTCCTGCCAAGAAGCTACCAAGAGCCAATGACATATTTTCTATATTCAGTTGCAACATAGGAAATCCTGATGGCCAGATTCTATGGTAGCTGAGTAGGTTGATATTTGATGAAACAATGTTATAAAGTATTATGAAATGTAAAtgacattatgaagactattgTTCTCTTTGATGTACCATTGTATCATTTCTTGACTtgctaaataaaggttcaattaaaaaaatacaaatc
>XR_002475711.2
GTAAATCTATGAGCTCCTATAACTATTTCACTTTTCAAAATTGTGTCCATTGACAAACATtaagtgatatatatatattttacatgtacAGGTTGTCAATGAATATAATATAGCTACTACTGTTGCTTTAAAATAGAGATTGACAGCATAAATAACATTTGTTTCGATATGTTGTGCATCACATGGTCTCATTTCCTGCACTGAAACAGGGGCCTTGAAGTTCAGTTCTTTCGTCTCCCAAGCAGTACCGTAAGACACCAAAATCAGCAAGGGATCACACCACGCTGTCCTTGTCAAGTACCCTGTTCTGTCACAATGCTCTGATTCACCTTCCCGTTGCAACATGTACATCACAGACCACAGCCCAACTACTGGGGTGGTGACAATCGTAGTGATCCTCATTGCTGTTGCTGCCCTCAGTGTTCTCATCTGCGGATGTTGGTGCTACCTGCTCCTGCAGCGGATTGGCCAGTCTGAAGATGAGGAGAGTATTGTAGGAGAGGGCGAGACCAAGGAGCCCTTCCTGATGGTACAGTACTCCACCAGGGGCCCTCACGTCGAGCACAAAACCAAGCTCGCCCACAAAGGCACTGAGAATCACACTTAACTGAGTCATTAAGAAACTGTGTCATCACCTAATATTAACCAAGAGGATCACCTCATTCACATTTCCTGCTGATCATCATCTTTCATCGTGCCATT
>TU1260723
TAACATTTGTTTCGATATGTTGTGCATCACATGGTCTCATTTCCTGCACTGAAACAGGGGCCTTGAAGTTCAGTTCTTTCGTCTCCCAAGCAGTACCGTAAGACACCAAAATCAGCAAGGGATCACACCACGCTGTCCTTGTCAAGTACCCTGTTCTGTCACAATGCTCTGATTCACCTTCCCGTTGCAACATGTACATCACAGACCACAGCCCAACTACTGGGGTGGTGACAATCGTAGTGATCCTCATTGCTGTTGCTGCCCTCAGTGTTCTCATCTGCGGATGTTGGTGCTACCTGCTCCTGCAGCGGATTGGCCAGTCTGAAGATGAGGAGAGTATTGTAGGAGAGGGCGAGACCAAGGAGCCCTTCCTGATGGTACAGTACTCCACCAGGGGCCCTCACGTCGAGCACAAAACCAAGCTCGCCCACAAAGGCACTGAGAATCACACTTAACTGAGTCATTAAGAAACTGTGTCATCACCTAATATTAACCAAGAGGATCACCTCATTCACATTTCCTGCTGATCATCATCTTTCATCGTGCCATTGAAGGATGATAAACGGACTGCAGCTCAATGTCTTATgaggaaatgtgatatttttgtttCTCATTCCATTGTGTGGATCTCAGGATGTGAGGTTGTGAACAGTTCATTGTTAGGTTTCTTAAGTATACATATTTTGAACAAAAAAATGTACATCTGATTGATGTTGATAGTTTTTGTTAACTCAGCAATCCACTACTGAATTGTGACGGTAGACAGCGCTCTGAACAAATGAGTGGGCAAAACCTTCTTCAGAGCTTGTTGGAAGAATGTATGACAAATTGATGTCAAAACAATTTACTTAATATCAAGTTGCTCAAATTATTTGAAATTTGcttaatttgtttgtttgttttgcatAGTTGAACTTGGTTTTATTTACCTTCAGTATTCAAATGTGAGTTAATAGCCATTTTAATAATTTGCTAAATGCCAGATTTGCCCGAAGATAAAAAAGTGTGATTCACTCCCTAGTTTATGTCTGTTGTCGCTGCTACTTACTAAATAATCTAGTGTACAAAATACTGTTTAttttctccagtgattgcacagaTAACCACTGAAATAAAACCAGTCATTGAAAGGGCAATTCTCCTTTGATAAACCATCACATTTCACAAGCACAACAAGGTCCCGGGTCTGAGTTTTAGTGAGGTTCGCACTCTAAAATactatttggagaacagcaaaaaatgtggccatgattactacacatttagatagctggctagactaatttaacaatcacaaaaaaaaattgacatgggctaattgagtgacagtCAGTGAGTGACATATAAGAAGAGGGAAACTGCTGATTCACAACCAggttcgaaattgcaccttgtttattttactattctaactctcaaaagTAAGTTGAAACCCCAACTGTTACTAAAAACATTAtagattattatatatttttttaatgttggCAAGGTCGGTACCTAGGTGTCCTCATTTGTAGCTACAACACTGAGTAGCTGCTACAACTGACATGGGTTGAGGAGTCCTGCCAAGAAGCTACCAAGAGCCAATGACATATTTTCTATATTCAGTTGCAACATAGGAAATCCTGATG
>TU1260726
TAACATTTGTTTCGATATGTTGTGCATCACATGGTCTCATTTCCTGCACTGAAACAGGGGCCTTGAAGTTCAGTTCTTTCGTCTCCCAAGCAGTACCGTAAGACACCAAAATCAGCAAGGGATCACACCACGCTGTCCTTGTCAAGTACCCTGTTCTGTCACAATGCTCTGATTCACCTTCCCGTTGCAACATGTACATCACAGACCACAGCC

Function

symbol description
snn Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Orthologous to human SNN (stannin).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624963.2 False 1892 mRNA 0.39 2 72283033 72285368
XR_002475711.2 False 702 mRNA 0.44 2 72284275 72285611
TU1260723 False 1631 TUCP 0.40 2 72283194 72285459
TU1260726 True 213 lncRNA 0.47 2 72284612 72285459
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110538252 LOC106601151 coding downstream 21271 72258667 ~ 72261762 (-)
LOC110538248 LOC106607340 coding downstream 60414 72180790 ~ 72222619 (-)
LOC110538246 NA coding downstream 152042 72130262 ~ 72130991 (-)
uncx LOC106601117 coding downstream 166893 72107103 ~ 72116140 (-)
mafk LOC106601120 coding downstream 299740 71973507 ~ 71983293 (-)
rmi2 cp075 coding upstream 100 72285711 ~ 72287272 (-)
LOC110538255 LOC106607344 coding upstream 2233 72287844 ~ 72290302 (-)
LOC110538258 LOC106607344 coding upstream 4701 72290312 ~ 72299863 (-)
ubfd1 LOC106601113 coding upstream 14399 72300010 ~ 72303236 (-)
il4r2 il4r2 coding upstream 42565 72328176 ~ 72332410 (-)
G1108863 NA non-coding downstream 9302 72273395 ~ 72273731 (-)
G1108241 NA non-coding downstream 26272 72256356 ~ 72256761 (-)
G1108235 NA non-coding downstream 31566 72251268 ~ 72251467 (-)
G1108158 NA non-coding downstream 145406 72137426 ~ 72137627 (-)
G1108157 NA non-coding downstream 147253 72135531 ~ 72135780 (-)
G1108877 NA non-coding upstream 26802 72312413 ~ 72363671 (-)
G1108887 NA non-coding upstream 54918 72340529 ~ 72377444 (-)
LOC110538263 kdm8 non-coding upstream 96586 72381011 ~ 72385372 (-)
G1108922 NA non-coding upstream 123448 72409059 ~ 72409279 (-)
G1108935 NA non-coding upstream 139133 72424744 ~ 72425071 (-)
G1108159 NA other downstream 144430 72137693 ~ 72138603 (-)
nudt1 8odp other downstream 634670 71646624 ~ 71648371 (-)
G1107536 NA other downstream 970032 71312259 ~ 71313001 (-)
G1107481 NA other downstream 1135868 71144655 ~ 71147165 (-)
LOC110538202 LOC106601032 other downstream 1522046 70752569 ~ 70775014 (-)
LOC110538266 LOC106601105 other upstream 497022 72778068 ~ 72800352 (-)
G1109275 NA other upstream 638546 72924157 ~ 72925251 (-)
G1109389 LOC106601099 other upstream 787281 73072892 ~ 73081402 (-)
LOC110538455 LOC106601085 other upstream 1182800 73462257 ~ 73510350 (-)
G1110369 hbb1 other upstream 1296583 73582194 ~ 73595358 (-)

Expression

LOC110538254(snn) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 80.
End of interactive chart.

LOC110538254(snn) Expression in each Bioproject

Bar chart with 21 bars.
LOC110538254(snn) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
End of interactive chart.

Co-expression Network