ubfd1 (LOC106601113)


Basic Information

Item Value
gene id ubfd1
gene name LOC106601113
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 72300010 ~ 72303236 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624971.2
TCATGGCGACCCAGGATGGTAGGAAATGAAGAAGTCGTAATGGAAACTGAAGCCACGTTGAAAGAGCCACAACCACTGTGTGAAAATGTTGGTGAAGGAAATGCTGAAGTATCGGAAACTGTGTCTCGGACAGATAATGCCGGGGAAAGCTCTTCAACTCAGGACCCCACTGTCAGCAATGGAGATGACAGtgatgaaggaaaggagatggTGGATCTAAAGATTATTTGGAACAAGAATAAGTATGATCTCAAGATTCCTTTAGATGGCACTGGAGCCAAACTGAAAGAGCGAATCCATTCACTCACTGGTCTTCCACCTGCTATGCAGAAAGTGATGTACAAGGGACTGCTACCAGAAGATAAGACGCTACGTGAAATTAAAGTTACAAATGGTGCAAAAATAATGGTGGTCGGATCTACAATAAATGATGTACTAGCTGTAAATACTCCAAAAGAGGTTATTCAGCAGGAAGTTAAAGCTGAAGAAAACAAAAAGGAACCTTTGTGTCGGCAAAAACAACACAGAAAGGTGTTGGACAAAGGCAAACCAGAGGACATAATGCCATCTGTTAAAGGAACAAAGGAACGCTTACCAACAGTGCCTTTAGCCGGAATGTACAACAAATCTGGTGGAAAAGTTCGTCTCACCTTCAAACTGGAACAAGATCAACTGTGGATTGGAACTAAGGagaggacagagaaaatcCCAATGGGATCCATCAAACATGTGGTGACTGAACCCATTGAAGGCCATGAGGATTATCACATGATGGCGTTTCAGTTGGGTCCAACAGAAGCCTCTCAGTATTGGGTCTACTGGGTGCCAATTCAGTTTGTTGATGCAATCAAAGACACAGTCCTTGGAAAGTGGCAGTATTTCTAATGTGCCTCTATTACTGACAGTGGAAAAACTGTGATCTAGAACAGGAACATATGAAAATGGGGATCTGGAGACAACAAGGAGTCCTAAGGAACTTAACATTGAAGCATATTAGAGAAGCAAACTGAAGGATGCCAATGGACTAATCATATTATTTGGGGTTTCAAGTGCACTATGAGGCATCATCATATTCCTCAGCCCAGTTCATCATAAAAAATTGAGCAAACCCAAGGGAAAACAATAAAACTAAATGTACAGAGA
>XM_021624970.2
GAGATTTATCAAACGCTTTACATACAATGGAAGCCCCGTAGGACCAATACACGTCAGCGCGTCCGTTTCCCAGCAGTCTCACTTCATATTGTACACAATCATCATGGCGACCCAGGATGGAAATGAAGAAGTCGTAATGGAAACTGAAGCCACGTTGAAAGAGCCACAACCACTGTGTGAAAATGTTGGTGAAGGAAATGCTGAAGTATCGGAAACTGTGTCTCGGACAGATAATGCCGGGGAAAGCTCTTCAACTCAGGACCCCACTGTCAGCAATGGAGATGACAGtgatgaaggaaaggagatggTGGATCTAAAGATTATTTGGAACAAGAATAAGTATGATCTCAAGATTCCTTTAGATGGCACTGGAGCCAAACTGAAAGAGCGAATCCATTCACTCACTGGTCTTCCACCTGCTATGCAGAAAGTGATGTACAAGGGACTGCTACCAGAAGATAAGACGCTACGTGAAATTAAAGTTACAAATGGTGCAAAAATAATGGTGGTCGGATCTACAATAAATGATGTACTAGCTGTAAATACTCCAAAAGAGGTTATTCAGCAGGAAGTTAAAGCTGAAGAAAACAAAAAGGAACCTTTGTGTCGGCAAAAACAACACAGAAAGGTGTTGGACAAAGGCAAACCAGAGGACATAATGCCATCTGTTAAAGGAACAAAGGAACGCTTACCAACAGTGCCTTTAGCCGGAATGTACAACAAATCTGGTGGAAAAGTTCGTCTCACCTTCAAACTGGAACAAGATCAACTGTGGATTGGAACTAAGGagaggacagagaaaatcCCAATGGGATCCATCAAACATGTGGTGACTGAACCCATTGAAGGCCATGAGGATTATCACATGATGGCGTTTCAGTTGGGTCCAACAGAAGCCTCTCAGTATTGGGTCTACTGGGTGCCAATTCAGTTTGTTGATGCAATCAAAGACACAGTCCTTGGAAAGTGGCAGTATTTCTAATGTGCCTCTATTACTGACAGTGGAAAAACTGTGATCTAGAACAGGAACATATGAAAATGGGGATCTGGAGACAACAAGGAGTCCTAAGGAACTTAACATTGAAGCATATTAGAGAAGCAAACTGAAGGATGCCAATGGACTAATCATATTATTTGGGGTTTCAAGTGCACTATGAGGCATCATCATATTCCTCAGCCCAGTTCATCATAAAAAATTGAGCAAACCCAAGGGAAAACAATAAAACTAAATGTACAGAGA
>XM_036938311.1
GAGATTTATCAAACGCTTTACATACAATGGAAGCCCCGTAGGACCAATACACGTCAGCGCGTCCGTTTCCCAGCAGTCTCACTTCATATTGTACACAATCATCATGGCGACCCAGGATGGAAATGAAGAAGTCGTAATGGAAACTGAAGCCACGTTGAAAGAGCCACAACCACTGTGTGAAAATGTTGGTGAAGGAAATGCTGAAGTATCGGAAACTGTGTCTCGGACAGATAATGCCGGGGAAAGCTCTTCAACTCAGGACCCCACTGTCAGCAATGGAGATGACAGtgatgaaggaaaggagatggTGGATCTAAAGATTATTTGGAACAAGAATAAGTATGATCTCAAGATTCCTTTAGATGGCACTGGAGCCAAACTGAAAGAGCGAATCCATTCACTCACTGGTCTTCCACCTGCTATGCAGAAAGTGATGTACAAGGGACTGCTACCAGAAGATAAGACGCTACGTGAAATTAAAGTTACAAATGGTGCAAAAATAATGGTGGTCGGATCTACAATAAATGATGTACTAGCTGTAAATACTCCAAAAGAGGTTATTCAGCAGGAAGTTAAAGCTGAAGAAAACAAAAAGGAACCTTTGTGTCGGCAAAAACAACACAGAAAGGTGTTGGACAAAGGCAAACCAGAGGACATAATGCCATCTGTTAAAGGAACAAAGGAACGCTTACCAACAGTGCCTTTAGCCGGAATGTACAACAAATCTGGTGGAAAAGTTCGTCTCACCTTCAAACTGGAACAAGATCAACTGTGGATTGGAACTAAGGagaggacagagaaaatcCCAATGGGATCCATCAAACATGTGGTGACTGAACCCATTGAAGGCCATGAGGATTATCACATGATGGTAACACGTTTCCTTACTACAAACTGCACAAGCCAGATTGACAGTTGATGTAATGCGTTTCAGTTGGGTCCAACAGAAGCCTCTCAGTATTGGGTCTACTGGGTGCCAATTCAGTTTGTTGATGCAATCAAAGACACAGTCCTTGGAAAGTGGCAGTATTTCTAATGTGCCTCTATTACTGACAGTGGAAAAACTG

Function

NR:

description
ubiquitin domain-containing protein UBFD1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624971.2 False 1143 mRNA 0.42 7 72300010 72303135
XM_021624970.2 False 1240 mRNA 0.42 7 72300010 72303236
XM_036938311.1 True 1067 mRNA 0.43 7 72300237 72303236
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110538258 LOC106607344 coding downstream 147 72290312 ~ 72299863 (-)
LOC110538255 LOC106607344 coding downstream 9708 72287844 ~ 72290302 (-)
rmi2 cp075 coding downstream 12738 72285711 ~ 72287272 (-)
LOC110538254 snn coding downstream 14399 72283033 ~ 72285611 (-)
LOC110538252 LOC106601151 coding downstream 38248 72258667 ~ 72261762 (-)
il4r2 il4r2 coding upstream 24940 72328176 ~ 72332410 (-)
kdm8 kdm8 coding upstream 38308 72341544 ~ 72346086 (-)
LOC110538260 il4r2 coding upstream 63090 72366326 ~ 72370493 (-)
LOC110538263 kdm8 coding upstream 77775 72381011 ~ 72385372 (-)
LOC110538264 LOC106601107 coding upstream 252808 72556044 ~ 72647866 (-)
G1108863 NA non-coding downstream 26279 72273395 ~ 72273731 (-)
G1108241 NA non-coding downstream 43249 72256356 ~ 72256761 (-)
G1108235 NA non-coding downstream 48543 72251268 ~ 72251467 (-)
G1108158 NA non-coding downstream 162383 72137426 ~ 72137627 (-)
G1108877 NA non-coding upstream 9177 72312413 ~ 72363671 (-)
G1108887 NA non-coding upstream 37293 72340529 ~ 72377444 (-)
G1108922 NA non-coding upstream 105823 72409059 ~ 72409279 (-)
G1108935 NA non-coding upstream 121508 72424744 ~ 72425071 (-)
G1108159 NA other downstream 161407 72137693 ~ 72138603 (-)
nudt1 8odp other downstream 651647 71646624 ~ 71648371 (-)
G1107536 NA other downstream 987009 71312259 ~ 71313001 (-)
G1107481 NA other downstream 1152845 71144655 ~ 71147165 (-)
LOC110538266 LOC106601105 other upstream 479397 72778068 ~ 72800352 (-)
G1109275 NA other upstream 620921 72924157 ~ 72925251 (-)
G1109389 LOC106601099 other upstream 769656 73072892 ~ 73081402 (-)
LOC110538455 LOC106601085 other upstream 1165175 73462257 ~ 73510350 (-)
G1110369 hbb1 other upstream 1278958 73582194 ~ 73595358 (-)

Expression

ubfd1(LOC106601113) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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ubfd1(LOC106601113) Expression in each Bioproject

Bar chart with 21 bars.
ubfd1(LOC106601113) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 750.
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Co-expression Network