kdm8 (kdm8)


Basic Information

Item Value
gene id kdm8
gene name kdm8
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 72341544 ~ 72346086 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624975.2
GCTAGATCAAACTGTCCACTCTTCAGACTGGAGCAAGGGGAATAACGTTGATGTTTTTTACGAAAAATGTGCTACGTGCAAAATAATGTGATATTACTGTTTGCATGATCGAACCCTATCATCACGTCGACAAGGAACATAAATAATGTATTCCTTTTCTACACGGAGATATTTTATTGCAACACCAGCGTCTACTTGTGTCAATAACGCACTAGCCTATGGCAGAACTGTGGTCAGCTATCTCTGCTGCTTTGCCTGTGACGGAGGCAGAATTTCCACTTGACTTCAGTGAAAAAGTTGAGCCCAGTGTGGTGGATGTGCTGAAACGTTGCAGGCAGCAGCTGTACACCGGGAGCGGTCGATGGAGGCAAAATGCTCAGATCATCTTGGACTTTTCCTGGGAGAAGCTCAACACAGGAACATGGCGTGATGTGGACAAGGAGTGGAGGTGTTTGTATTCATATGGCTGCCTGTTCAAAGTAGCTGCCCTATGCCGTGATGACGCCTCATCAGCTAGAGTGCAGGAGGCCATACGGACATGTGACTTGGGCCTGCTCATGGGGGCAGCCATCATGGACAATATTTTACAAACCTTTGTAAGGATCCTGCAAAATGAAATCGGGAAGAGGCACTCCAATGAGGAGAATCCTAGTGAAGGCGTTAGTGCCAAGAAAATGAAGGTTGACTGTGTGTCAGTGCCCGTTGTCAAGCAGGCTCTGGCAGTACCAAGGGTACACTGTCCATCATTGGAGAGTTTCAAGAAAGATTACTTGGATCCCCAAAAGCCAGTCATATTAGAGGGTATCATAGATCACTGGCCAGCCTTCAAAAATCACCCTTGGAGCATAGAATACCTGCAAACTGTTGCTGGTTGTCGGACTGTACCTGTTGAAGTGGGCTCAAGATATACCGATGAGGAATGGTCACAGACGCTGCTTACGGTCAATGAATTCATCGATCGCTATATTGTTGTGAAAgACGCATCAAGTTTGGGATATCTTGCTCAGCACCAGCTATTTGATCAGGTCCCCGAGCTTAAAGACGACATCCGTATCCCTGACTACTGTTGTCTTGGTGAGGGAGATGAAGATGACATCACAATCAACGCTTGGTTTGGGCCAGGAGGTACAGTGTCCCCCCTTCATCAAGATCCTCAACAGAACTTCCTGGCTCAGGTGGTTGGGAGAAAGTACATTCGTCTGTATTCCCCTGAGGACACCGAGAAACTCTACCCTCACCAATTGCAGCTCCTACACAACACTAGTCAGGTGGAGGTGGAAAGTCCAGACGTGGTGCGATTCCCAGAGTTTGTGAAGGCTCCCTACCTAGAGTGTGTGTTGCAGCCTGGGGAGGTCTTATTCATCCCAGTCAAGCACTGGCATTACGTGCGTTCTTTGGAGCTCAGCTTTTCTGTGAGCTTCTGGTGGTCATGACCCACGATGAGGGATCCAGattcaggttgtttttagtcagAATTTTGATTATTGCAGTGGTCTTGTAAAATGCAAGTCCTGTGCTCACGTATGTTGTGACTTAGGTCTGAATGTTATTTTCTTCTTAAACAATCATTAACATGTCTGTCCTTTCATTGCTTCAGCCCTCTCAGCCTCATCCACCAAATGGCTTTAAAAACACCTTATTCTATAAACAAATTCATGGTTAAGTGACAATGGTAATTCAAAAAGGAATAAGGTTGGAAACGAGTCTCAATTTACATAGTTCACAACTTACAACGGTGATTCATGTTGAAGAATTATGGAAAATTTGCTGAACTCAATTAACTTGAGTAGAGCAAAATGGCCTTCACTATGGCTATTTTACATAATTAAAAGTGTCCCACCTCATATCCATGACAAAGGAAAGCCAGTTGTGTTCAATCTATCAACACTTGAATGTGATTATGGCACACATTGAATTCCAAGCTACCTGCATGATTGGCGCTTGCTTCTACTCATTAATAAATTAAAAGAAGGAGCAGTTAGTGTATGCTCATTTCCTACTGCATATAAAATATGGAGTTGTTACCCATTTAATTTAATAGGGTATGCTTTTTCAAATTAGCATGTGTAATTGTTCCCAAATTATTCCTGCAGATACTCAAAGATGAggtaatgtccataatttattcAAATAAGGCAGTACTATTCTAATTTAACAACCTAATGAACCACAGGCACAAATTATGGACAAACAGCTTTCAATTTAAACTGCCTGAACGAATGATTGAAGTAGTTGCCACACTTCCCAGAATTGCTCCCCTGGAAAGTAACTTAATATAATCAAGTTAAGAGTGGAGCTCACGGGAGACCATTGACGATTCAATGAAAGTTATTTGAGGGTGTGAGATTCCATTGGACCCCACATAATGTGGTTGACCAATAATTGCTAGTGCACACACATCGACAAGCCAATTTGCCTCTTTGCATTATAAGCTGACGTTAGCTCACAGATGAAAGTGGttagctacactgaacaaaaatataaacgcaacatgcaaagtgttggtaccatgtttcatgagctgaaataaaatatcccagaaatgtt
>XM_021624976.2
GAGGCTAGATCAAACTGTCCACTCTTCAGACTGGAGCAAGGGGAATAACGTTGATGTTTTTTACGAAAAATGTGCTACGTGCAAAATAATGTGATATTACTGTTTGCATGATCGAACCCTATCATCACGTCGACAAGGAACATAAATAATGTATTCCTTTTCTACACGGAGATATTTTATTGCAACACCAGCGTCTACTTGTGTCAATAACGGTAGCTAAACGTGTTTTGTGAATTATCTAAATTATTAGAGCGTTTTCTATTTATTTGTCCACATGTTGTAATATCATTGTCGGGCTATTAAATATAACACGTGCCCAGTGATGATACGTTTGTTTGTGGAAGAGCCATATAGTATTTCATTAGATATCTGATCCACTCTAACAATATTTGGGGATAGGGGTCTTTGTTTCTTGCTCTTACCGGAATCGAGGTTCAGGGGTCTCGCTCCCTGAAAATCTCTGTCTCTTCATATTTAACTCATTTACATCATGTCACACGTGAGGAAGGATATGGAAAATTGTGGTTTTAATAGAAGTCTTGTgtattcattagagttaacaggtAGCAAAGGTTTTGCAGCACTAGCCTATGGCAGAACTGTGGTCAGCTATCTCTGCTGCTTTGCCTGTGACGGAGGCAGAATTTCCACTTGACTTCAGTGAAAAAGTTGAGCCCAGTGTGGTGGATGTGCTGAAACGTTGCAGGCAGCAGCTGTACACCGGGAGCGGTCGATGGAGGCAAAATGCTCAGATCATCTTGGACTTTTCCTGGGAGAAGCTCAACACAGGAACATGGCGTGATGTGGACAAGGAGTGGAGGTGTTTGTATTCATATGGCTGCCTGTTCAAAGTAGCTGCCCTATGCCGTGATGACGCCTCATCAGCTAGAGTGCAGGAGGCCATACGGACATGTGACTTGGGCCTGCTCATGGGGGCAGCCATCATGGACAATATTTTACAAACCTTTGTAAGGATCCTGCAAAATGAAATCGGGAAGAGGCACTCCAATGAGGAGAATCCTAGTGAAGGCGTTAGTGCCAAGAAAATGAAGGTTGACTGTGTGTCAGTGCCCGTTGTCAAGCAGGCTCTGGCAGTACCAAGGGTACACTGTCCATCATTGGAGAGTTTCAAGAAAGATTACTTGGATCCCCAAAAGCCAGTCATATTAGAGGGTATCATAGATCACTGGCCAGCCTTCAAAAATCACCCTTGGAGCATAGAATACCTGCAAACTGTTGCTGGTTGTCGGACTGTACCTGTTGAAGTGGGCTCAAGATATACCGATGAGGAATGGTCACAGACGCTGCTTACGGTCAATGAATTCATCGATCGCTATATTGTTGTGAAAgACGCATCAAGTTTGGGATATCTTGCTCAGCACCAGCTATTTGATCAGGTCCCCGAGCTTAAAGACGACATCCGTATCCCTGACTACTGTTGTCTTGGTGAGGGAGATGAAGATGACATCACAATCAACGCTTGGTTTGGGCCAGGAGGTACAGTGTCCCCCCTTCATCAAGATCCTCAACAGAACTTCCTGGCTCAGGTGGTTGGGAGAAAGTACATTCGTCTGTATTCCCCTGAGGACACCGAGAAACTCTACCCTCACCAATTGCAGCTCCTACACAACACTAGTCAGGTGGAGGTGGAAAGTCCAGACGTGGTGCGATTCCCAGAGTTTGTGAAGGCTCCCTACCTAGAGTGTGTGTTGCAGCCTGGGGAGGTCTTATTCATCCCAGTCAAGCACTGGCATTACGTGCGTTCTTTGGAGCTCAGCTTTTCTGTGAGCTTCTGGTGGTCATGACCCACGATGAGGGATCCAGattcaggttgtttttagtcagAATTTTGATTATTGCAGTGGTCTTGTAAAATGCAAGTCCTGTGCTCACGTATGTTGTGACTTAGGTCTGAATGTTATTTTCTTCTTAAACAATCATTAACATGTCTGTCCTTTCATTGCTTCAGCCCTCTCAGCCTCATCCACCAAATGGCTTTAAAAACACCTTATTCTATAAACAAATTCATGGTTAAGTGACAATGGTAATTCAAAAAGGAATAAGGTTGGAAACGAGTCTCAATTTACATAGTTCACAACTTACAACGGTGATTCATGTTGAAGAATTATGGAAAATTTGCTGAACTCAATTAACTTGAGTAGAGCAAAATGGCCTTCACTATGGCTATTTTACATAATTAAAAGTGTCCCACCTCATATCCATGACAAAGGAAAGCCAGTTGTGTTCAATCTATCAACACTTGAATGTGATTATGGCACACATTGAATTCCAAGCTACCTGCATGATTGGCGCTTGCTTCTACTCATTAATAAATTAAAAGAAGGAGCAGTTAGTGTATGCTCATTTCCTACTGCATATAAAATATGGAGTTGTTACCCATTTAATTTAATAGGGTATGCTTTTTCAAATTAGCATGTGTAATTGTTCCCAAATTATTCCTGCAGATACTCAAAGATGAggtaatgtccataatttattcAAATAAGGCAGTACTATTCTAATTTAACAACCTAATGAACCACAGGCACAAATTATGGACAAACAGCTTTCAATTTAAACTGCCTGAACGAATGATTGAAGTAGTTGCCACACTTCCCAGAATTGCTCCCCTGGAAAGTAACTTAATATAATCAAGTTAAGAGTGGAGCTCACGGGAGACCATTGACGATTCAATGAAAGTTATTTGAGGGTGTGAGATTCCATTGGACCCCACATAATGTGGTTGACCAATAATTGCTAGTGCACACACATCGACAAGCCAATTTGCCTCTTTGCATTATAAGCTGACGTTAGCTCACAGATGAAAGTGGttagctacactgaacaaaaatataaacgcaacatgcaaagtgttggtaccatgtttcatgagctgaaataaaatatcccagaaatgtt

Function

symbol description
kdm8 Predicted to enable chromatin binding activity and histone demethylase activity (H3-K36 specific). Predicted to be involved in G2/M transition of mitotic cell cycle; histone H3-K36 demethylation; and regulation of gene expression. Predicted to act upstream of or within chromatin organization and rhythmic process. Predicted to be active in nucleus. Orthologous to human KDM8 (lysine demethylase 8).

NR:

description
lysine-specific demethylase 8

GO:

id name namespace
GO:0070544 histone H3-K36 demethylation biological_process
GO:0000086 G2/M transition of mitotic cell cycle biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0051864 histone demethylase activity (H3-K36 specific) molecular_function

KEGG:

id description
K10277 KDM8, JMJD5; [protein]-arginine 3-hydroxylase / protease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624975.2 False 2547 mRNA 0.43 8 72341544 72346083
XM_021624976.2 True 2919 mRNA 0.42 8 72341544 72346086

Neighbor

gene id symbol gene type direction distance location
il4r2 il4r2 coding downstream 9134 72328176 ~ 72332410 (-)
ubfd1 LOC106601113 coding downstream 38308 72300010 ~ 72303236 (-)
LOC110538258 LOC106607344 coding downstream 41681 72290312 ~ 72299863 (-)
LOC110538255 LOC106607344 coding downstream 51242 72287844 ~ 72290302 (-)
rmi2 cp075 coding downstream 54272 72285711 ~ 72287272 (-)
LOC110538260 il4r2 coding upstream 20240 72366326 ~ 72370493 (-)
LOC110538263 kdm8 coding upstream 34925 72381011 ~ 72385372 (-)
LOC110538264 LOC106601107 coding upstream 209958 72556044 ~ 72647866 (-)
LOC110538266 LOC106601105 coding upstream 431982 72778068 ~ 72800352 (-)
LOC110538280 NA coding upstream 788801 73134887 ~ 73136579 (-)
G1108864 NA non-coding downstream 34914 72274082 ~ 72306630 (-)
LOC110538254 snn non-coding downstream 56085 72283033 ~ 72285611 (-)
G1108863 NA non-coding downstream 67813 72273395 ~ 72273731 (-)
G1108241 NA non-coding downstream 84783 72256356 ~ 72256761 (-)
G1108235 NA non-coding downstream 90077 72251268 ~ 72251467 (-)
G1108922 NA non-coding upstream 62973 72409059 ~ 72409279 (-)
G1108935 NA non-coding upstream 78658 72424744 ~ 72425071 (-)
G1108938 NA non-coding upstream 81378 72427464 ~ 72427711 (-)
G1108952 NA non-coding upstream 100991 72447077 ~ 72447295 (-)
G1108159 NA other downstream 202941 72137693 ~ 72138603 (-)
nudt1 8odp other downstream 693181 71646624 ~ 71648371 (-)
G1107536 NA other downstream 1028543 71312259 ~ 71313001 (-)
G1107481 NA other downstream 1194379 71144655 ~ 71147165 (-)
G1109275 NA other upstream 578071 72924157 ~ 72925251 (-)
G1109389 LOC106601099 other upstream 726806 73072892 ~ 73081402 (-)
LOC110538455 LOC106601085 other upstream 1122325 73462257 ~ 73510350 (-)
G1110369 hbb1 other upstream 1236108 73582194 ~ 73595358 (-)

Expression

kdm8(kdm8) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
End of interactive chart.

kdm8(kdm8) Expression in each Bioproject

Bar chart with 21 bars.
kdm8(kdm8) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network