LOC110538275 (LOC106607358)


Basic Information

Item Value
gene id LOC110538275
gene name LOC106607358
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 72978834 ~ 72992385 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938320.1
AGGAGACGGTGGGGGAGGGTCACGTGTGTATACACTGTAGGGTTCAGTACCACTCAATTCGTAGTAAGTTGTCAACGTCCTCCCCTTTCGAGAACAAACCTCGTCAGACTAGAAACGATATCGCTAAATGCAGCAGTAGCCTAAGTAACTACGCAAAAAGTAATCGATCTAACTATAccgtttttgtatttttttcttcccGAATAGAAAAGGATACGACGTTTGTTACAAGTGAACACCAAATGTAATTACAGAGAAATGTCAGTGGAAGTACAGCAAAACCCGATGCCTCCGTAGACTTGTCGCCGTGCCAAATCTGTACTTTTCTGccAAGCCAGTGCAAGAGTGCAGCCCTCTCTCAGAGCCCTAGCTATGTGGAGCTGTATAGCTTACAATGAGACGGACTCCAGCTCCGAACACCGGCTCTGCCAGGACTTTGGCCTCGTCCTTTCCGTCTTCTCCTTGTTCTACCTCATGGTGTgcttccccatagggctctgctaCAACGCCCTGCTGGTGGTGGTCAACCTCTCCAACAAAATGTCCATGACCATGCCAGACGTCTACTTCGTCAACATGGCCATCGCTGGCCTGGTCCTCAACCTGGTGGCCCCCGTGGAGCTGCTAGGCCCTAGCTTCACACGATGGCCTGTGTGGGAGTACAACAATGAGATCTACATCACCCTGCTCATCCTCTTCAATATCTCCTCCCTGGTCATCATGTACTCCACCACGCTGCTCAGCCTGGACTACTACATCGAGCGAGCGCTGCCGCGCACCTACATGTCCAGCGTGTACAACACCAAGCACGTGTGCGGCTTCATCTGGGGCGGCGCCGTGCTCACCAGCTTCTCCTCGCTGCTCTTCTACGTGTGCAACCACGTCTCCACCAAGATCATTGAGTGCTCCAAGATGCAGAACAAGGAGGCTGCGGACGCCATCATGATGTTCATCGGCTACGTGGTTCCGGCCGTGGCCGTGCTGTATGCTTTCGTGCTCATCCTGCGCATTAGGAAGGAGTCCACCCCGCTGGACCAGGACTCATCCCGGCTGGACCCTTCTATCCACAGGCTGCTGCTGGCCTCTGTCTGCATGCAGTTTGTCCTATGGACCCCGTACTACATGACTCTACTGGTACACACTATAGCCGGGGCGCCGGGGAGCTACGGCAGCAACAACAAACAGCGGCTCACAATTTACTTCTTCCTGAGGTGTCTGTCGGAGCTGCTGGCCTTCTCCAGTAGCTTCGCCATGCCTCTCATGTACAGGCAGATGAACAAGAACTTCTCCCACAAGCTGCAGCGGCTGCTAAAGAGGCTAAACTGCAGGGACACACCCTGCCCTCACGAACACTCCTCGGTGCAGCAGGTGGCGACGTGAGACAGGGCCAGGCCttactaacccctaacctcttaCCCAGGCTGCACTTATTAttacagaccccacagagcccacaACACGTGGCCTTAGAAGTCAGCCACAGGTCCACTGCTGCCACTCTGACTGGAGTCTTGACTTTTAATGAAGCTAAGGAATCTTCAGTGACTTTCTAGAACTTTACTTTCTTTGTCCAGTTCTGTAGCGAGAGGATGAACCAAGTAGAAACCACTAAGTGCATTAGCAAGCTTGTCACTTGGATACTTGGTTATGAGATTGGGGGCGCAAAGCCGTTGTAATGCGGTGTCTCTTCTCCTAATACACACATGGGTGATTCACCAACATAGGCTGTAGAGATATTGCGCTGCACACCAAAACTGACAATGAGTTATACTATTGGAGTAACAATTGTTTTTATATCTCATGTGTCAATCAGCATGTTACTACTATGCATGTAGCTGGTAGTAGGTAGGAAGTGGAATACAATCTGTTTATGACCCTGTCAGACCACCCAGTGCCCCGGAGCCTGAGGCCATGTCTCATTGAAGAGTTCCTGTCCAGCCTCGGCCACAACACTCTGGAggggtctcaaatggcaccctacatagtgcattacatttgatcagagccctatgtgtCCTGttaaacagtagtgcactatataggaaatagggtcccATTACCGACacatcctctgtcctccactgtctTGCACCTGGAAAAAACCTTTGCCTGCTCGTCACCCTCAGCAGTTTACACAGTACTATACATGTACCTCGTTTAATTTTACACCCCTACGGCATTACATAGGATCATGTGAACTACGGAGAGAACTCTCCACACAGCTTCTATTCAGGGTTCAGGCATGGCCAACTTACCTCTTGTGTCCTAGAATGCTCTCACTTATCTGGCTGCACACAACACCCAGTCATTGTGTGGGGAACATTTGCCTTGGCTCAGTTTATGTGATGTCTAAAAGCTGCTTAGAGGCACAGAAGTGACCTGCACAGCTGCTTTGCTATCTTGCTTCCCACTAAAGAGGAAGACTGTTTTATATATAAAACATGTCCTATTTATATTTCAGCTAAATAATGAACACGTCCAATCACATTTCACTCTTGTCATGCTATGGTGATGTCCGTTATTGCATGTGGTTATGTGATGGTTTGAAGTGTTGAAGTCTTTGTTGCTAAAATGAAAAGGTCAGTTTAGTCATCTCCACTTTGAAAGAGAcaatacaatgataagctgtaaCCCATTGTTTAAACATGTTGCTTCTTGCTACTGCTGGTGTATCCAGGCCACCTCATGATAAGTATTGACTTAATTAAAAGCTCAGCAAAACCCTTTGAGTTTTATGCTGAGGAACCCTAAAAATGAGTCCACACCCTGTTAATCATTATTTAAGCTCTGGTCAAAGTCCTAATTTCTTACAGTTGAAATGCTCTTTCTGAGCAGTAGAGCAACAGAGGGACAGATATGTCACATGTTCTGCCCTGCTACTACCAGAAACAAACAAATGGCTTATGTCTAGACTTATATTGGCTCATTTTAATTCCAGGGTTGTTGAATGATGGTAGAGTTCACTGAAAATGTCATGCAAGAGCCAGAATCCTTTTCATTGTATGGTAAAGTTAGTTATAAGCAATGCCAATCTACCTTTAGATATGACCGACAACACCAGGAAATAAAGAATGGTTAGGAATAGGAACTGAAATAGGAAACAGTAAATTCTCACAGTTAAAGATTCAGTCTGAGATCTTAGGCACTTCCAACTTCCTTACATATCACACGAAATGGATGACATGGTACACAATTCTTTTCTACTTTCAGGTACCAGTTTTGTCTCAAGAGcactactttcaaaactactggctgaaatgatACAAAACCTTTGGCACGTCACTGTAATGTGATTCTTAGTTTTAGAATGACATATTCCATCACCCTTTACCTCCCCTTTATGTTGTGCCGTTATAACCCACCAAAATGAgtatcttttttttaaagaaccagTACTGTATGTTTATGGTAAACTTTAGAGTATGCTATTCTTTTAAATCCACCTATATAAGCAGAGATaagaatgtattttatttcatgaGGTTTAGCTACATAGGGCAAGATGAATCCAGTTTCAGATGTGATGCTTTTGTGACTGTGTATATAccagtatatatgtataatatgaaATATCTGTATATATTGTATGTTAGAGATTTACTGGAAAAACACCATGTCCTCTCACAAATACAGTATTATTTTCTCAAATATATATTTAGATACTGTAGCTTCAGTAATCTTCTCTATTGTCGGTTGAGTCAAAGACTGATTACACAATAAACTAACATGGGAATTAAACACAA

Function

NR:

description
probable G-protein coupled receptor 146

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08431 GPR146; G protein-coupled receptor 146

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938320.1 True 3743 mRNA 0.45 2 72978834 72992385

Neighbor

gene id symbol gene type direction distance location
LOC110538274 baiap3 coding upstream 47291 72892973 ~ 72931543 (+)
LOC110538272 LOC106601101 coding upstream 90935 72872666 ~ 72888106 (+)
LOC110538271 LOC106601103 coding upstream 111255 72860994 ~ 72867579 (+)
LOC110538270 LOC106607353 coding upstream 118204 72854150 ~ 72860630 (+)
LOC110538269 LOC106601102 coding upstream 128143 72846084 ~ 72850691 (+)
LOC110538276 LOC106601100 coding downstream 18937 73011322 ~ 73023593 (+)
LOC110538277 LOC106601099 coding downstream 47480 73039865 ~ 73103907 (+)
LOC110538279 LOC106607360 coding downstream 123258 73115643 ~ 73127907 (+)
LOC110538463 LOC106601093 coding downstream 342636 73335021 ~ 73376744 (+)
LOC110538462 rpc11 coding downstream 392370 73384755 ~ 73386199 (+)
G1108707 NA non-coding upstream 11385 72967207 ~ 72967449 (+)
G1108702 NA non-coding upstream 17485 72960954 ~ 72961349 (+)
G1108689 NA non-coding upstream 33494 72945120 ~ 72945340 (+)
G1108687 NA non-coding upstream 36810 72941824 ~ 72942024 (+)
G1108717 NA non-coding downstream 2699 72995084 ~ 72995313 (+)
G1108720 NA non-coding downstream 5815 72998200 ~ 72998533 (+)
G1108748 NA non-coding downstream 50086 73042471 ~ 73043684 (+)
G1108754 NA non-coding downstream 57059 73049444 ~ 73152734 (+)
G1108760 NA non-coding downstream 137345 73129730 ~ 73132638 (+)
LOC110538241 LOC106607115 other upstream 960544 72016045 ~ 72019145 (+)
psmg3 psmg3 other upstream 1036035 71941515 ~ 71942804 (+)
G1105655 NA other upstream 2072405 70902905 ~ 70906429 (+)
G1105467 LOC106601028 other upstream 2344863 70612303 ~ 70633971 (+)
G1105393 NA other upstream 2607623 70370755 ~ 70371211 (+)
G1109505 NA other downstream 313040 73305425 ~ 73306154 (+)
G1109778 NA other downstream 841258 73833643 ~ 73834606 (+)
G1109786 NA other downstream 853870 73846255 ~ 73846794 (+)
G1111126 LOC106578813 other downstream 1967881 74960266 ~ 75048356 (+)

Expression


Co-expression Network