LOC110538276 (LOC106601100)


Basic Information

Item Value
gene id LOC110538276
gene name LOC106601100
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 73011322 ~ 73023593 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624992.2
GGCGCAGGCAGTGAGTGCAGCCTCAGCTGGACACGGGGATTAGAAATCGGTGACACTCCACCGACTTCTGCACTGGAGCTTCACACTGGATGGACAACAAGCCCACCACGGAAAACTCAGGTGTCACAGCAATAGCGTCACAGGCTGAGGTTGGGTGAATAAACATGCACATGGACTGGATGAGAAAATCCAGCACTGGAATCAGAACGTGTGAAAAACAAACGGCtcaaaaaaagagaaagaagCAAAGTCCCTTAGTACATGTTGGTCCTTAGGTTGAACCACATGGATCATGTAAGCCCTTAGGTTGAACCACTTGGATCATGTAAGCCCTTAAGTTGAACCACATGGATCATGTAAGCTCTTAGGTTGAACCACATGGATCATGTAAGCCCTTAGGTTGAACCACTTGGATCATGTAAGCCCTTAGGTTGAACCACATGGATCATGTAAGCCCTTAGGTTGAACCACATGGATCATGTAAGCCCTTAGGTTGAACCACATGGATCATGTAAGCCCTTAGGTTGAACCACATGGATCATGTAAGCCCTTAGGTTGAACCACATGGATCATGTAAGCTCTTAGGTTGAACCACTTGGATCATGTAAGCCCTTAGGTTGGACCACATGGATAATGTAAGCTCTTAGGTTGAACCACTTGGATCATGTAAGCCCTTAGGTTGAACCACTTGGATCACGTAAGCCCTTAGGTTGGACCACATGGATAATGTAAGCCCTTAGGTTGGACCACATGGATCATGTAAGCCCTTAGGTTGGACCACTTGGATCATGTAAGCCCTTAGTTTGAACCACATGGATCATGTAAGCCCTTAGGTTGAACCACATGGATCATGTAAACCCTTAGGTTGAACCACTTGGATCATGTAAGCCCTTAGGTTGAACCACATGGATCATGTAAGCCCTTAGGTTGAACCACTTGGATCATGTAAGCCCTTAGGTTGGACCACATGGATAATGTAAGCCCTTAGGTTGGACCACATGGATAATGTAAGCACTAGCAACATGCCGATAAGAAGGGGTGATATCAAAACATGGAGGTGCTGCTCTGTGTCTGTACCCTCTGTCATCTATTGCTAGGCAAACCTTGATATAAACATGGGGTCAGATAACCCTTAAACTATTTCTATATTATAAGAACTGACTTCTGTCAGCATGCAAATGGAGCATAGATGAGAGAACCTTTCGAGACAGAGAATCGGGCACTGACACGATTgaaatatgtaggctatatgatctATGATTCAAGACCTTCAAAGCAAAGACACAGGCAGTATGGAAGTGCAGACCACCTCTCTGGTTCAGGCATATGTCACCGGTACGGAGCAACTAAACACCTCATATGACTACAACGTCACGGACGCGACTGAGAACCCAGACACCTATCAGTTCTATACCATCGGCCTCTTCCTCTCCTGCCTCTACACCATCCTCCTCTTTCCCATCGGCTTCATTGGGAATATACTCATCCTGGTGGTCAACCTCAACCACAGGGAGAAGATGACTATCCCGGACCTCTACTTTGTAAACCTGGCAGTCGCAGACCTCATCCTGGTGGCAGACTCCCTCATCGAGGTCTTCAACCTCAATGAGAAGTACTATGAGTACGCTGTTCTGTGTACCTTCATGTCCTTATTCCTGCAGGTCAATATGTACAGCAGCATCTTTTTCCTGACATGGATGAGCTTTGATCGCTACGTGGCTCTGGCCAGCTCCATGAGCAGTAGTCCTCTGAGGACCATGCAGCACGCCAAGCTCAGCTGCAGCCTCATCTGGATGGCCTCCATCCTGGCTACGCTGCTCCCCTTCACCATCGTCCAGACCCAGCACCGCGGCGAGGTGCACTTCTGCTTCGCCAACGTCTTTGAGATCCAGTGGTTAGAGGTGACCATCGGCTTCCTGGTGCCCTTCTCCGTCATCGGCCTGTGCTACTCGCTGATCGTGCGTATCTTGATGCAGGCGCAAAAGCACCGGGGTCTGTGGCCTCGCAGACAGAAGGCCCTGAGGATGATCggggtggtggtgctggtgttCTTCATCTGCTGGCTGCCTGAGAACATCTTCATCAGCATCCAGCTGCTGCATGGCACGGACGACCCGGCCCAGCGCAGCACCTTCAGCGGCCACCTGTGGCACGACTACCCGCTGACGGGCCACATCGTCAACCTGGCCGCCTTCTCCAACAGCTGCCTCAACCCCATCATCTACAGCTTCCTGGGGGAGACCTTCAGGGACAAGCTAAGACTCTTCATCAAGCAGAAGGCCAGCTGGTCCGTGCTCTACCGCTTCTGCCACCACACCCTAGATTTACACATACCTGTGAGGAGTGGGGTGTCGGAGGTGTGATGCTGCAGGATCAGCAACATCTTTGTATGAAAGGTTAGGATGTAACAGAAGTCCAGGGGGGAGTAAGAGCTATGTGCTGCTGTGTCTACCCAGCAGGATCCTGGGAATTGTCTTCATGACACACTCAATTCTTCCAGAATTCAGCTTCTTATAAGTGGTAGAGATACCATGGAGGAAAACTGAAACTGACCatgaggcagccattttgtctcCTGTAAGCGCGGGTGGAGAACACACTGTGTATCTTCATTAGATATAAATAATGATATTAGGGTAATAAATAAACATTTGGAAAATGGAGAAGGCAAATTGATGAAAATACCAGGTTTGGTGTTCTTTCAATCTCTTCTCATTATTCTAATGTAACAAAGCTATACCTGTCATGAAACCGCAACAATCTACTCAGAGAAATGGCAGTGTGGGAACAACTTAAAACAGACACATCAAAGGGACCAGTGACTTGCTTCTCCTTGACCCCAGTGTGGTTATTGTAACACTgtatactgctcagaactgtttGGGTAACCCATAAGACCGCTAGACACACCTGTTGTCGGATCGTTTTTTTATGTACTGACAATTCATTGTATTGTAAGTAGATGTCCTTTTCTTTGTTTGCCTGTGCAAGCAATTGACCACTCACACCActtttatttaaataaataaaataaacatttgttttttaGGAAGCTGTTGAGAAGCTCTTTGCTGACTTAGTACTGACAACCTTAAGTGTATTACAAAAAGTGGAAGTAAAAGACAGGATATGCCTTCCATAAATCTAAACAAATAATTTTTCTACATATGAAAACAAATTGTAGGTGGTGACCTGCTGCATGTGCCCAGACGTCAGAAAAAGCTTCTTTGCCTTTGATTTTCTCCTACGTTTACAGAattcatttgaaatgtttttaacaaaaatattcttaaaatcAAGGTAGATAGCAAAGGAAACATGAATGCTCATTTTCCTCAAGCATACACAAACAGTTGTGTGCCAGTGCCTTCAGTATTTGAAGAACGCTAAACATATCGAGTTAAGACCGATACTCATTCTAAAGACGGATGTTGTCCACATTATTATGACCCTAGTTGTCAACTCCTGTTTGCCTGAGGCAGAAACAAGGAGGCAGGTGTTTCtctgagtggaggagagggactATATGTAAACACATTACTCAATGAAGACGACAGAGGCGCTGCTATCATCTCTTGTGTTTACTCTCAGTCGCCAACAGTTTCAGTCATTCTAAAACTACAGTGAGCAGAGACAGATTTATTTACCAAATGCTTGTTTATTTACCAAATACTATTTTGGGTAAGGGCTGAGGGTAAGGGTTAATATCCCTTTAAACATCCTTTTCTGTCTTGCTAATCTGTCTGTGAAACAAGGCTGAATAAAGACCAGATCTTTTAGTTCTTGTTACAGTTGAGAGTATATACAGTAGGCTACTGTAAGGAGTCTCACCTGCTCCTGTTTTGCTAGAAAAATCTCCTCAATTACAGGAACCCGGCAAAAGGACTGCTCCCCTCAACTATTGTTCTCATTCACTGTAAACCCAAACATTCTGCAGAAATACACCAATCTTTGTAAGTTTATGCCATGACCCTGTTAACCCTTATTGAACTCTAAGACCCTCGCCTCAGTCATTACCGTGTATGAAATCCTTACTGTGCATTACGGTGCGTTCTGAGAAAAGTATCCATTTTCCATGAATGTAAAAGGAACtgagagaaaaacaaacaaatacagtgGATTCCAGTAATTGCAGTTCCCAGCAGTTAGGTTTTTGTgctatttgtttgtgtttgtgaattaCTCCTAGGTTACTCAAACTGTAACAATCCATTCTATCTCTAATTTGAATCTGGGGAAATGATGGATTAGTGCATGTGTCAGATATCGTTTGACTAATAGGCCTACTTACTGAAACCACAACAGAAGAGGCATGGTATTTTTTTTTATAGACATCATAAAATATCTTATAGAATCTGCCAACAAGCCCTTCTATGTGCGCCTGAATTCCCACGCGTGAACCACCCATAACAAGCAAACTAATTTATATCAAGATAACAATAAGATATCAATAATAGCACATAGGCAATTGGTCATAGGCAATTTGAGGTTATGTACTTCAGGATTATGCAACAGGCGGGCCACGCAAACAGGATGGCAGTGGCTCATTTGGGTGCCACCACTTTGTAACATTTATGGCCTAACCCATGTGCGTTGTTGAAGAATACAATAGCACATTGATTTTCTTTTAGAGTGCCTGGCTAAAAAAAACAGGGCATCAAAAACTGGGTTCCTAGTTGGAAGTAGATTGACTATCAACTTGTTTCTTACCTTGTAATAAATACTAACACTATCAAAGGAGAAATAAGGAGTAGTAATTAACAAACAATTCCTAATAATTACAAGGCAAATAAATACTGGCTACTAAGCAACACAAGAGGATGTGAAAAACCTTTGGACAGTGCCATAAACGTATTCATTGAGGCTCCAAATCATCTGACGTAAATCCAGTTTACAGCCTCTGTGTATATCATTGTCAGATAGAGCAAGTCAATAAACAGTTAATGCATCAGGTTGAATCTGACATGGCTAAAAGTGATCTGTCTTTTTATTACTATCTCGTATTACTGTGAATTGCACCCTCTATC

Function

NR:

description
G-protein coupled estrogen receptor 1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0030284 estrogen receptor activity molecular_function

KEGG:

id description
K04246 GPER1, GPR30; G-protein coupled estrogen receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624992.2 True 5027 mRNA 0.44 2 73011322 73023593

Neighbor

gene id symbol gene type direction distance location
LOC110538275 LOC106607358 coding upstream 18937 72978834 ~ 72992385 (+)
LOC110538274 baiap3 coding upstream 79779 72892973 ~ 72931543 (+)
LOC110538272 LOC106601101 coding upstream 123423 72872666 ~ 72888106 (+)
LOC110538271 LOC106601103 coding upstream 143743 72860994 ~ 72867579 (+)
LOC110538270 LOC106607353 coding upstream 150692 72854150 ~ 72860630 (+)
LOC110538277 LOC106601099 coding downstream 16272 73039865 ~ 73103907 (+)
LOC110538279 LOC106607360 coding downstream 92050 73115643 ~ 73127907 (+)
LOC110538463 LOC106601093 coding downstream 311428 73335021 ~ 73376744 (+)
LOC110538462 rpc11 coding downstream 361162 73384755 ~ 73386199 (+)
mgrn1b LOC106607363 coding downstream 399738 73423331 ~ 73431408 (+)
G1108720 NA non-coding upstream 12789 72998200 ~ 72998533 (+)
G1108717 NA non-coding upstream 16009 72995084 ~ 72995313 (+)
G1108707 NA non-coding upstream 43873 72967207 ~ 72967449 (+)
G1108702 NA non-coding upstream 49973 72960954 ~ 72961349 (+)
G1108689 NA non-coding upstream 65982 72945120 ~ 72945340 (+)
G1108748 NA non-coding downstream 18878 73042471 ~ 73043684 (+)
G1108754 NA non-coding downstream 25851 73049444 ~ 73152734 (+)
G1108760 NA non-coding downstream 106137 73129730 ~ 73132638 (+)
G1108762 NA non-coding downstream 167597 73191190 ~ 73191579 (+)
G1108809 NA non-coding downstream 191941 73215534 ~ 73265081 (+)
LOC110538241 LOC106607115 other upstream 993032 72016045 ~ 72019145 (+)
psmg3 psmg3 other upstream 1068523 71941515 ~ 71942804 (+)
G1105655 NA other upstream 2104893 70902905 ~ 70906429 (+)
G1105467 LOC106601028 other upstream 2377351 70612303 ~ 70633971 (+)
G1105393 NA other upstream 2640111 70370755 ~ 70371211 (+)
G1109505 NA other downstream 281832 73305425 ~ 73306154 (+)
G1109778 NA other downstream 810050 73833643 ~ 73834606 (+)
G1109786 NA other downstream 822662 73846255 ~ 73846794 (+)
G1111126 LOC106578813 other downstream 1936673 74960266 ~ 75048356 (+)

Expression


Co-expression Network