LOC110538462 (rpc11)


Basic Information

Item Value
gene id LOC110538462
gene name rpc11
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 73384755 ~ 73386199 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625297.2
CATAAAGAAAGAGCAAATGTATTTTCTTACCGAACCTTTTTAGATGTAACAACGTTTTTACACGAGCGTGGAGGTCAACAACGTTGTCAGGGATTTTGTAATTTAGATAAATGATTGAAATAGATGTACAAACCTAGCTACATTGTGAGATCGGTGCTGACCAATTTAGTCAAAAGAATATGCTTCTGTTTTGTCCAACATGTGGGAATGTGTTGATTGTAGAGGAAGGACAGAAGTGCTATCGATTCGCCTGCAACACATGTCCGTACGTGCATAACATTACTAGGAAGGTAAACAACAGGAAGTATCCCAAACTGAAAGAGGTTGATGATGTGCTTGGTGGAGCTGCAGCCTGGGAAAATGTGGATTCCACGCCAGAAAAATGTCCCAAGTGTGAGCACCCCCGAGCATTCTTCATGCAGATTCAGACCAGATCTGCAGATGAACCGATGACAACATTCTACAAATGCTGCAATTATGAGTGTGGACATCGCTGGAGAGACTAAACTGGTGTTCAATAGGATCTTTACCTGAGAACACTAGCTAGTTGAGTCAGCTAACCTGGTTTTATGGTGTATGTGCTGTAGCCAAATCTTCTGTTGTCATGCCAGACAGCTTTGGCATAACAGTGAATAAACAGGAGTTTGCtaatagcacaaacagactggaccACATGACTTCTAGTTGACCACACCATTGGTGCCTAGCGTGTTGGGGAAAAAATAGCAAGAGTTGGTGTAATATACACTTTTACCAAATGTACTTCATACACAAGAGTATGTCCTTTTATTTATCATTGTGATTAGTTAACTTCTCTGGGTTGTTTCCTATTACATTCAGAAGTCAATTGCACTTCCAATTTATAGCTGAAGATACATAATTTGTGTTTGAGTAGTTGCCAAATGACCAGAATCCATTGTTGGTGTCATTATTTTATTTCTCCTAGATGTTTAACATACTATAAAAATGACTGGTTTTGGATTGAAAGAGTATGACCATCTGACAAATTACTCATGTAAAATCACAAATACTGGTTTATGTTAAAATAACTGCACTGTATG
>TU1261395
GTTTTTACACGAGCGTGGAGGTCAACAACGTTGTCAGGGATTTTGTAATTTAGATAAATGATTGAAATAGATGTACAAACCTAGCTACATTGTGAGATCGGTGCTGACCAATTTAGTCAAAAGAATATGCTTCTGTTTTGTCCAACATGTGGGAATGTGTTGATTGTAGAGGAAGGACAGAAGTGCTATCGATTCGCCTGCAACACATGTCCGTACGTGCATAACATTACTAGGAAGGTAAACAACAGGAAGTATCCCAAACTGAAAGAGGTTGATGATGTGCTTGGTGGAGCTGCAGCCTGGGAAAATGTGGATTCCACGCCAGAAAAATGTCCCAAGTGTGAGCACCCCCGAGCATTCTTCATGCAGATTCAGACCAGATCTGCAGATGAACCGATGACAACATTCTACAAATGCTGCAATTATGAGTGTGGACATCGCTGGAGAGACTAAACTGGTGTTCAATAGGATCTTTACCTGAGAACACTAGCTAGTTGAGTCAGCTAACCTGGTTTTATGGTGTATGTGCTGTAGCCAAATCTTCTGTTGTCATGCCAGACAGCTTTGGCATAACAGTGAATAAACAGGAGTTTGCtaatagcacaaacagactggaccACATGACTTCTAGTTGACCACACCATTGGTGCCTAGCGTGTTGGGGAAAAAATAGCAA

Function

symbol description
rpc11 Contributes to RNA polymerase III activity. Involved in tRNA transcription by RNA polymerase III and termination of RNA polymerase III transcription. Part of RNA polymerase III complex. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy. Orthologous to human POLR3K (RNA polymerase III subunit K).

NR:

description
DNA-directed RNA polymerases III 12.5 kDa polypeptide

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625297.2 False 1061 mRNA 0.39 3 73384755 73386199
TU1261395 True 676 TUCP 0.43 3 73384808 73385867

Neighbor

gene id symbol gene type direction distance location
LOC110538463 LOC106601093 coding upstream 8011 73335021 ~ 73376744 (+)
LOC110538279 LOC106607360 coding upstream 256848 73115643 ~ 73127907 (+)
LOC110538277 LOC106601099 coding upstream 280848 73039865 ~ 73103907 (+)
LOC110538276 LOC106601100 coding upstream 361162 73011322 ~ 73023593 (+)
LOC110538275 LOC106607358 coding upstream 392370 72978834 ~ 72992385 (+)
mgrn1b LOC106607363 coding downstream 37132 73423331 ~ 73431408 (+)
LOC110538457 LOC106601143 coding downstream 53570 73439769 ~ 73443382 (+)
LOC110538456 LOC106601142 coding downstream 73700 73459899 ~ 73462891 (+)
mpg LOC106601084 coding downstream 147078 73533277 ~ 73539888 (+)
LOC110538454 NA coding downstream 167109 73553308 ~ 73559544 (+)
G1109535 NA non-coding upstream 33731 73350624 ~ 73351024 (+)
G1109509 NA non-coding upstream 73981 73310535 ~ 73310774 (+)
G1109504 NA non-coding upstream 80143 73304194 ~ 73304612 (+)
G1109490 NA non-coding upstream 97740 73286609 ~ 73287015 (+)
G1109483 NA non-coding downstream 1399 73387598 ~ 73388826 (+)
G1109553 NA non-coding downstream 6451 73392650 ~ 73411665 (+)
G1109572 LOC106607368 non-coding downstream 82773 73468972 ~ 73471788 (+)
G1109591 NA non-coding downstream 118415 73504614 ~ 73505170 (+)
G1109636 NA non-coding downstream 168574 73554773 ~ 73555042 (+)
G1109505 NA other upstream 78601 73305425 ~ 73306154 (+)
LOC110538241 LOC106607115 other upstream 1366465 72016045 ~ 72019145 (+)
psmg3 psmg3 other upstream 1441956 71941515 ~ 71942804 (+)
G1105655 NA other upstream 2478326 70902905 ~ 70906429 (+)
G1105467 LOC106601028 other upstream 2750784 70612303 ~ 70633971 (+)
G1109778 NA other downstream 447444 73833643 ~ 73834606 (+)
G1109786 NA other downstream 460056 73846255 ~ 73846794 (+)
G1111126 LOC106578813 other downstream 1574067 74960266 ~ 75048356 (+)
G1111805 LOC105030512 other downstream 2032590 75418789 ~ 75423163 (+)
G1111961 NA other downstream 2358940 75745139 ~ 75745620 (+)

Expression


Co-expression Network