mgrn1b (LOC106607363)


Basic Information

Item Value
gene id mgrn1b
gene name LOC106607363
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 73423331 ~ 73431408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938330.1
TCATCCATAAGTCACATGACTTCATTTAACGACTGGAATTACTTTGCCAGCCATTTTTTCATGGGAGGGGAGAAAtttgacactccccatccagagGGTTACCTATTTGGAGAAAACATGGATCTGAACTTCCTTGGAAATAGGCCTGTACAATTTCCGTACGTGACCCCGGCACCCCATGAGCCTGTGAAGACCCTGAGAAGTCTGGTCAATATCAGAAAGGACTCCCTGCGCTTGGTCAGGTACAAAGATGACACTGATGCTCCAGTAGAGGAAGGAGGGAAGCCAAAGGTTCTGTATGGTGTGGAGTTCACATTTGATGCTGATGCTCGTGTGGCTATCACCCTTTATTGCCAAGCTTTTGAGGAATTCACCAATGGGATGGCAATGTACAACCCAAAGGGCCCAGCCCTGGTTTCTGAGACTGTACACTATAAGAGGGGTGTGAGCCAACATTTCTCCCTGCCTTCTTTCAAAATCGATTTCACCGACTGGAAGGAGGAGGATCTGAACTTTGACCTGGACCGGGGTGTTTTCCCCATGGTGATCCAAGCTGTGGTGGATGAAGGGGATGATTGCTTTGGACATGCACATGTGCTGCTGGCAGCCTTTGAGAGACATGTGGATGGCAGTTTCTCCGTCAAGCCTCTGAAGCAGAAGCAAATTGTGGATCGTGTGAGCTACCTGCTGCAGGAGATCTATGGAATTGAAAACAAAAACAACCAAGAGACCAAGCCGTCGGAGGATGAGAACAGTGACAACAGCAATGAGTGTGTTGTTTGTCTGTCAGACCTCCGAGACACCATCATCCTGCCCTGCAGACACCTGTGTCTCTGCAACTCCTGTGCTGACACCCTGCGTTACCAGGCCAACAACTGTCCTATCTGCAGACTGCccttcCGAGCCTTGCTGCAGATCAGAGCTGTGAGGAAGAAGCCTGGGCCGCTGTCCCCTGTGTCTTTCAGCCCTGTACTGGCTCAGACCATGGACCATGATGAGCACTCGAGCTCAGACTCGGTTCCCCCAGGCTTTGAGCCCATCTCTCTGCTGGAGGCCCTGAACGGCCTGCACTCTGTgtccccctccatcccccccgcccccctctACGATGATATTAACTTCTCTGGGAGCCTGGTAGGGGAGGGCCGGCCGCTGGGCTCCCCAGAACACTCCGGTGACGGGGGCCTGCAGAAGGGCAAAGTCAGCAAGTCACCTGACAGCACCCTGAGGTCGCCCTCATCACCTAtccaggaggaggatgaggagaagctGTCTGAGATGTCGGACGCCCAGCCTCACACACTGCTCTCCAGCAGCCCTGCTCCCACCGAGGCCACTGCAGCCGAGGATGTACTGGAGTCCATCTCCCCAGATGATGaggacaggctgcactctggaggagagagagagatccttcaGGACTACAGCAGTGAACACAGCAGCCTGACCAAAACAGAGAGTGACCCGCCAGGGGACCTGTCTCTGCCAGGGTCATCAGAGAGCCTGAAGAGTCAGAGTACCAACTGCTCCAGCCAGCCCCTCCTGTGCCCCCCCAGCAGCCTTCACATGGAGGATGAGCAACTTGACCCCTAACCTCTGGGCCCAATGGTTCTCCCTCTCTGGCTGAGTCCCAATTCACTTTCTCGCATGTATTTGACAATGGTGGAAACTCCCTCCAGTCAATaattacaccaatccaatgcttttaaatcCATGACGGGGAGTGTGAAAGTGCACATTTAGCCTAAAGGATGAATAATTGGGACATAGCCATGGTCTCCTCCCAAGCCCATCCCTCCCCCATGATCCAGTCCCCTTGGGCCTTGTAGAAGACCACTTTCCTACTTTAGTCATCGATTCATGCCATAACTGGCATTGATTCAAAATGTGTTTGTGGTGGTCACTGCAAGGATTTACTAAAACCATACTATACCTTAACTAAAAAACAACAAGTCCTTAATTAGATTGCTTTacattcagttgaagtcggaagtttacatacaccttggccaaatacatttaaacacattttttcacagttcctgtcatttaattctagtaaaattccctgtcctaggtcagttaggatcaccacttta
>XM_021625290.2
GAACTACAAGTCCCTAACACCATGTAGTTTGACGTATCACACATCAGAAGGCTTTTGGCTAGAAACTTGTGTTTATTTTCTTTAGCGGACACCAAGTTATCCTTGGTTCTATCGTTATTCTTGACAGGTACACAGTTGAATATATAAATCGCTGTGTAATACCGAAGAAAGTCTAAAACTTGTTACAAAACGGTCCCTTGGACGATAAATACACTAGCGTTGGGGTTAGTAGTTAGCTAATGctgtagctaattagctagctagcaacaacaaGGAAAGATGGGGTCGATTCTTAGTCGGAGAATTGCTGGCGTTGAGGATATTGATATCCAGGCGAATTCTGCATACAGATTTCCACCGAAATCGGGGAATTACTTTGCCAGCCATTTTTTCATGGGAGGGGAGAAAtttgacactccccatccagagGGTTACCTATTTGGAGAAAACATGGATCTGAACTTCCTTGGAAATAGGCCTGTACAATTTCCGTACGTGACCCCGGCACCCCATGAGCCTGTGAAGACCCTGAGAAGTCTGGTCAATATCAGAAAGGACTCCCTGCGCTTGGTCAGGTACAAAGATGACACTGATGCTCCAGTAGAGGAAGGAGGGAAGCCAAAGGTTCTGTATGGTGTGGAGTTCACATTTGATGCTGATGCTCGTGTGGCTATCACCCTTTATTGCCAAGCTTTTGAGGAATTCACCAATGGGATGGCAATGTACAACCCAAAGGGCCCAGCCCTGGTTTCTGAGACTGTACACTATAAGAGGGGTGTGAGCCAACATTTCTCCCTGCCTTCTTTCAAAATCGATTTCACCGACTGGAAGGAGGAGGATCTGAACTTTGACCTGGACCGGGGTGTTTTCCCCATGGTGATCCAAGCTGTGGTGGATGAAGGGGATGATTGCTTTGGACATGCACATGTGCTGCTGGCAGCCTTTGAGAGACATGTGGATGGCAGTTTCTCCGTCAAGCCTCTGAAGCAGAAGCAAATTGTGGATCGTGTGAGCTACCTGCTGCAGGAGATCTATGGAATTGAAAACAAAAACAACCAAGAGACCAAGCCGTCGGAGGATGAGAACAGTGACAACAGCAATGAGTGTGTTGTTTGTCTGTCAGACCTCCGAGACACCATCATCCTGCCCTGCAGACACCTGTGTCTCTGCAACTCCTGTGCTGACACCCTGCGTTACCAGGCCAACAACTGTCCTATCTGCAGACTGCccttcCGAGCCTTGCTGCAGATCAGAGCTGTGAGGAAGAAGCCTGGGCCGCTGTCCCCTGTGTCTTTCAGCCCTGTACTGGCTCAGACCATGGACCATGATGAGCACTCGAGCTCAGACTCGGTTCCCCCAGGCTTTGAGCCCATCTCTCTGCTGGAGGCCCTGAACGGCCTGCACTCTGTgtccccctccatcccccccgcccccctctACGATGATATTAACTTCTCTGGGAGCCTGGTAGGGGAGGGCCGGCCGCTGGGCTCCCCAGAACACTCCGGTGACGGGGGCCTGCAGAAGGGCAAAGTCAGCAAGTCACCTGACAGCACCCTGAGGTCGCCCTCATCACCTAtccaggaggaggatgaggagaagctGTCTGAGATGTCGGACGCCCAGCCTCACACACTGCTCTCCAGCAGCCCTGCTCCCACCGAGGCCACTGCAGCCGAGGATGTACTGGAGTCCATCTCCCCAGATGATGaggacaggctgcactctggaggagagagagagatccttcaGGACTACAGCAGTGAACACAGCAGCCTGACCAAAACAGAGAGTGACCCGCCAGGGGACCTGTCTCTGCCAGGGTCATCAGAGAGCCTGAAGAGTCAGAGTACCAACTGCTCCAGCCAGCCCCTCCTGTGCCCCCCCAGCAGCCTTCACATGGAGGATGAGCAACTTGACCCCTAACCTCTGGGCCCAATGGTTCTCCCTCTCTGGCTGAGTCCCAATTCACTTTCTCGCATGTATTTGACAATGGTGGAAACTCCCTCCAGTCAATaattacaccaatccaatgcttttaaatcCATGACGGGGAGTGTGAAAGTGCACATTTAGCCTAAAGGATGAATAATTGGGACATAGCCATGGTCTCCTCCCAAGCCCATCCCTCCCCCATGATCCAGTCCCCTTGGGCCTTGTAGAAGACCACTTTCCTACTTTAGTCATCGATTCATGCCATAACTGGCATTGATTCAAAATGTGTTTGTGGTGGTCACTGCAAGGATTTACTAAAACCATACTATACCTTAACTAAAAAACAACAAGTCCTTAATTAGATTGCTTTacattcagttgaagtcggaagtttacatacaccttggccaaatacatttaaacacattttttcacagttcctgtcatttaattctagtaaaattccctgtcctaggtcagttaggatcaccacttta
>XM_021625291.2
GAACTACAAGTCCCTAACACCATGTAGTTTGACGTATCACACATCAGAAGGCTTTTGGCTAGAAACTTGTGTTTATTTTCTTTAGCGGACACCAAGTTATCCTTGGTTCTATCGTTATTCTTGACAGGTACACAGTTGAATATATAAATCGCTGTGTAATACCGAAGAAAGTCTAAAACTTGTTACAAAACGGTCCCTTGGACGATAAATACACTAGCGTTGGGGTTAGTAGTTAGCTAATGctgtagctaattagctagctagcaacaacaaGGAAAGATGGGGTCGATTCTTAGTCGGAGAATTGCTGGCGTTGAGGATATTGATATCCAGGCGAATTCTGCATACAGATTTCCACCGAAATCGGGGAATTACTTTGCCAGCCATTTTTTCATGGGAGGGGAGAAAtttgacactccccatccagagGGTTACCTATTTGGAGAAAACATGGATCTGAACTTCCTTGGAAATAGGCCTGTACAATTTCCGTACGTGACCCCGGCACCCCATGAGCCTGTGAAGACCCTGAGAAGTCTGGTCAATATCAGAAAGGACTCCCTGCGCTTGGTCAGGTACAAAGATGACACTGATGCTCCAGTAGAGGAAGGAGGGAAGCCAAAGGTTCTGTATGGTGTGGAGTTCACATTTGATGCTGATGCTCGTGTGGCTATCACCCTTTATTGCCAAGCTTTTGAGGAATTCACCAATGGGATGGCAATGTACAACCCAAAGGGCCCAGCCCTGGTTTCTGAGACTGTACACTATAAGAGGGGTGTGAGCCAACATTTCTCCCTGCCTTCTTTCAAAATCGATTTCACCGACTGGAAGGAGGAGGATCTGAACTTTGACCTGGACCGGGGTGTTTTCCCCATGGTGATCCAAGCTGTGGTGGATGAAGGGGATGATTGCTTTGGACATGCACATGTGCTGCTGGCAGCCTTTGAGAGACATGTGGATGGCAGTTTCTCCGTCAAGCCTCTGAAGCAGAAGCAAATTGTGGATCGTGTGAGCTACCTGCTGCAGGAGATCTATGGAATTGAAAACAAAAACAACCAAGAGACCAAGCCGTCGGAGGATGAGAACAGTGACAACAGCAATGAGTGTGTTGTTTGTCTGTCAGACCTCCGAGACACCATCATCCTGCCCTGCAGACACCTGTGTCTCTGCAACTCCTGTGCTGACACCCTGCGTTACCAGGCCAACAACTGTCCTATCTGCAGACTGCccttcCGAGCCTTGCTGCAGATCAGAGCTGTGAGGAAGAAGCCTGGGCCGCTGTCCCCTGTGTCTTTCAGCCCTGTACTGGCTCAGACCATGGACCATGATGAGCACTCGAGCTCAGACTCGGTTCCCCCAGGCTTTGAGCCCATCTCTCTGCTGGAGGCCCTGAACGGCCTGCACTCTGTgtccccctccatcccccccgcccccctctACGATGATATTAACTTCTCTGGGAGCCTGGTAGGGGAGGGCCGGCCGCTGGGCTCCCCAGAACACTCCGGTGACGGGGGCCTGCAGAAGGGCAAAGTCAGCAAGTCACCTGACAGCACCCTGAGGTCGCCCTCATCACCTAtccaggaggaggatgaggagaagctGTCTGAGATGTCGGACGCCCAGCCTCACACACTGCTCTCCAGCAGCCCTGCTCCCACCGAGGCCACTGCAGCCGAGGATGTACTGGAGTCCATCTCCCCAGATGATGaggacaggctgcactctggaggagagagagagatccttcaGGACTACAGCAGTGAACACAGCAGCCTGACCAAAACAGAGAGTGACCCGCCAGGGGACCTGTCTCTGCCAGCTCTAGGTCCTGATGCCTGCTCTATTGGTATGGAGGAATAAATGTGGGTCATCAGAGAGCCTGAAGAGTCAGAGTACCAACTGCTCCAGCCAGCCCCTCCTGTGCCCCCCCAGCAGCCTTCACATGGAGGATGAGCAACTTGACCCCTAACCTCTGGGCCCAATGGTTCTCCCTCTCTGGCTGAGTCCCAATTCACTTTCTCGCATGTATTTGACAATGGTGGAAACTCCCTCCAGTCAATaattacaccaatccaatgcttttaaatcCATGACGGGGAGTGTGAAAGTGCACATTTAGCCTAAAGGATGAATAATTGGGACATAGCCATGGTCTCCTCCCAAGCCCATCCCTCCCCCATGATCCAGTCCCCTTGGGCCTTGTAGAAGACCACTTTCCTACTTTAGTCATCGATTCATGCCATAACTGGCATTGATTCAAAATGTGTTTGTGGTGGTCACTGCAAGGATTTACTAAAACCATACTATACCTTAACTAAAAAACAACAAGTCCTTAATTAGATTGCTTTacattcagttgaagtcggaagtttacatacaccttggccaaatacatttaaacacattttttcacagttcctgtcatttaattctagtaaaattccctgtcctaggtcagttaggatcaccacttta

Function

NR:

description
E3 ubiquitin-protein ligase MGRN1-like isoform X2

GO: NA

KEGG:

id description
K10604 MGRN1; E3 ubiquitin-protein ligase MGRN1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938330.1 False 2099 mRNA 0.51 15 73423331 73431408
XM_021625290.2 False 2432 mRNA 0.50 15 73424409 73431408
XM_021625291.2 True 2478 mRNA 0.50 16 73424409 73431408

Neighbor

gene id symbol gene type direction distance location
LOC110538462 rpc11 coding upstream 37132 73384755 ~ 73386199 (+)
LOC110538463 LOC106601093 coding upstream 46587 73335021 ~ 73376744 (+)
LOC110538279 LOC106607360 coding upstream 295424 73115643 ~ 73127907 (+)
LOC110538277 LOC106601099 coding upstream 319424 73039865 ~ 73103907 (+)
LOC110538276 LOC106601100 coding upstream 399738 73011322 ~ 73023593 (+)
LOC110538457 LOC106601143 coding downstream 8361 73439769 ~ 73443382 (+)
LOC110538456 LOC106601142 coding downstream 28491 73459899 ~ 73462891 (+)
mpg LOC106601084 coding downstream 101869 73533277 ~ 73539888 (+)
LOC110538454 NA coding downstream 121900 73553308 ~ 73559544 (+)
LOC110538451 LOC106601078 coding downstream 131093 73562501 ~ 73563404 (+)
G1109553 NA non-coding upstream 11666 73392650 ~ 73411665 (+)
G1109526 NA non-coding upstream 32990 73332894 ~ 73390341 (+)
G1109483 NA non-coding upstream 34505 73387598 ~ 73388826 (+)
G1109535 NA non-coding upstream 72307 73350624 ~ 73351024 (+)
G1109572 LOC106607368 non-coding downstream 37564 73468972 ~ 73471788 (+)
G1109591 NA non-coding downstream 73206 73504614 ~ 73505170 (+)
G1109636 NA non-coding downstream 123365 73554773 ~ 73555042 (+)
G1109637 NA non-coding downstream 124335 73555743 ~ 73555973 (+)
G1109608 LOC106607371 non-coding downstream 128920 73560328 ~ 73561312 (+)
G1109505 NA other upstream 117177 73305425 ~ 73306154 (+)
LOC110538241 LOC106607115 other upstream 1405041 72016045 ~ 72019145 (+)
psmg3 psmg3 other upstream 1480532 71941515 ~ 71942804 (+)
G1105655 NA other upstream 2516902 70902905 ~ 70906429 (+)
G1109778 NA other downstream 402235 73833643 ~ 73834606 (+)
G1109786 NA other downstream 414847 73846255 ~ 73846794 (+)
G1111126 LOC106578813 other downstream 1528858 74960266 ~ 75048356 (+)
G1111805 LOC105030512 other downstream 1987381 75418789 ~ 75423163 (+)
G1111961 NA other downstream 2313731 75745139 ~ 75745620 (+)

Expression


Co-expression Network