LOC110538445 (LOC100136291)


Basic Information

Item Value
gene id LOC110538445
gene name LOC100136291
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 73595266 ~ 73599921 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938338.1
TTCTGAACATCAATAAATTGGACGTCTCATGAGACAAAAACCCCAGGGATCTCTTGTAACATTTTGCAAGTACCAACGGAAATCAACAAACAAACGTCAACATGGTCGACTGGACAGATGCTGAGCGCAGTGCCATCGTAGGCCTGTGGGGAAAGATCAGCGTGGATGAGATCGGACCCCAGGCCCTGGCCAGACTTTTGATCGTGTCTCCATGGACTCAGAGGCACTTTAGCACCTTCGGCAACCTATCCACACCCGCTGCCATCATGGGTAACCCCGCCGTGGCCAAGCACGGAAAGACCGTGATGCACGGACTGGACAGAGCGGTGCAGAACCTGGATGACATCAAGAACACCTATACTGCACTGAGTGTGATGCACTCGGAGAAACTGCACGTGGATCCCGACAACTTCAGGCTCCTTGCGGATTGCATCACCGTGTGCGTGGCCGCCAAGCTCGGTCCCGCCGTTTTCAATGCTGATACTCAGGAAGCCTTCCAGAAGTTCCTGGCTGTCCCTTATACACACACTGCAATGTAGGACGTGTAATCTTCGGAAGAGTTTTGCCATAACCTTGCTTTTATTCTTGCATCAGAGGAATACATTAAAACTGATAACTAAGCTGTTATCATGCGAATTTTGAAACGTTGGTAATCTAGATAAACTGTATAGGCCTATTTACATAAACTTCCATTTTTTAGGATCTAATCTACAGACTTGATTCTGTAACAGCTAATAAATTAacatttactgttgtttttaacAGATAAATTATTGGAATTGATGTTGGAATTGAGAAGCGCTCACTTGGCCAATACTGATCTTTGCCAGAGCCAATCATATGCGCCGTCTTCAGTGGGCGGAGAGCACTCATAAATATAAATTGCATGCAGTGTCTCCCTACACAAGACATTAATTTGTTTAATCTTGTTGCAAAACCGGAAAA
>XM_021625275.2
TTCTGAACATCAATAAATTGGACGTCTCATGAGACAAAAACCCCAGGGATCTCTTGTAACATTTTGCAAGTACCAACGGAAATCAACAAACAAACGTCAACATGGTCGACTGGACAGATGCTGAGCGCAGTGCCATCGTAGGCCTGTGGGGAAAGATCAGCGTGGATGAGATCGGACCCCAGGCCCTGGCCAGACTTTTGATCGTGTCTCCATGGACTCAGAGGCACTTTAGCACCTTCGGCAACCTATCCACACCCGCTGCCATCATGGGTAACCCCGCCGTGGCCAAGCACGGAAAGACCGTGATGCACGGACTGGACAGAGCGGTGCAGAACCTGGATGACATCAAGAACACCTATACTGCACTGAGTGTGATGCACTCGGAGAAACTGCACGTGGATCCCGACAACTTCAGGCTCCTTGCGGATTGCATCACCGTGTGCGTGGCCGCCAAGCTCGGTCCCGCCGTTTTCAATGCTGATACTCAGGAAGCCTTCCAGAAGTTCCTGGCTGTCGTTGTGTCCGCTCTTGGCAGACAGTACCACTAGAGTATCACTCGACAGCATCAATATGGACGAGAGATGACACTCCAAACCAGTCTGTTAGGCTGGAACCTGTGCCATAGCTACTACACatgttgaaaataataaaatctatttaaaaGCA

Function

NR:

description
hemoglobin subunit beta

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0005833 hemoglobin complex cellular_component
GO:0005506 iron ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938338.1 False 945 mRNA 0.46 4 73595266 73599921
XM_021625275.2 True 666 mRNA 0.51 3 73598943 73599921
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Neighbor

gene id symbol gene type direction distance location
hbb1 LOC106601074 coding downstream 11743 73582572 ~ 73583523 (-)
LOC110538444 LOC100136291 coding downstream 28157 73566045 ~ 73567109 (-)
LOC110538446 LOC106601074 coding downstream 33987 73560334 ~ 73561279 (-)
LOC110538440 LOC106601082 coding downstream 41417 73539124 ~ 73553849 (-)
LOC110538455 LOC106601085 coding downstream 84916 73462257 ~ 73510350 (-)
LOC110538453 NA coding upstream 10608 73610529 ~ 73611047 (-)
LOC110538443 LOC100136576 coding upstream 17190 73617111 ~ 73618238 (-)
LOC118937729 LOC106601065 coding upstream 32762 73632683 ~ 73633582 (-)
LOC118937730 LOC106601065 coding upstream 38818 73638739 ~ 73639637 (-)
LOC118937731 LOC106601065 coding upstream 44789 73644710 ~ 73645608 (-)
G1110372 NA non-coding downstream 5436 73562820 ~ 73589830 (-)
G1110370 LOC106601071 non-coding downstream 6900 73569181 ~ 73588366 (-)
G1110391 NA non-coding downstream 39501 73555516 ~ 73555765 (-)
G1109433 NA non-coding downstream 389988 73205038 ~ 73205278 (-)
G1109426 NA non-coding downstream 407938 73186878 ~ 73187328 (-)
G1110409 LOC100135791 non-coding upstream 29138 73629059 ~ 73641390 (-)
G1110412 LOC100135791 non-coding upstream 47216 73647137 ~ 73653511 (-)
G1110410 LOC106607381 non-coding upstream 50231 73650152 ~ 73679408 (-)
G1110447 NA non-coding upstream 112955 73712876 ~ 73715294 (-)
G1110450 NA non-coding upstream 115772 73715693 ~ 73716381 (-)
G1109389 LOC106601099 other downstream 513864 73072892 ~ 73081402 (-)
G1109275 NA other downstream 670015 72924157 ~ 72925251 (-)
LOC110538266 LOC106601105 other downstream 796002 72778068 ~ 72800352 (-)
LOC110538254 snn other downstream 1309807 72283033 ~ 72285611 (-)
G1110374 NA other upstream 12656 73612577 ~ 73614268 (-)
LOC110538422 LOC106601282 other upstream 468364 74068285 ~ 74079316 (-)
G1110701 NA other upstream 604300 74204221 ~ 74205191 (-)
G1110941 NA other upstream 1050362 74650283 ~ 74650763 (-)
G1111424 LOC106601260 other upstream 1218054 74817975 ~ 74824590 (-)

Expression

LOC110538445(LOC100136291) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15000.
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LOC110538445(LOC100136291) Expression in each Bioproject

Bar chart with 21 bars.
LOC110538445(LOC100136291) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400000.
End of interactive chart.

Co-expression Network