LOC110538433 (LOC106601065)


Basic Information

Item Value
gene id LOC110538433
gene name LOC106601065
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 73686626 ~ 73687501 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625265.2
CATCACTGCACTTCTACTCCAGCATCGTCTTTAACTACAACCATGAGTCTCACCGCTAAGGACAAGAAAATGGTCAAGGCCTTCTGGGCTAAGGTGGCCGGCAAGGCTGAGGACATCGGATGCGATGCTCTGTCTAGGACGCTGGTTGTGTACCCCCAGACCAAGACCTACTTCTCCCACTGGAAGGACCTGAGCCCCGGCTCTGCCCCAGTCAGGAAGCACGGTGGGACCATCATGGGAGGCATCAGTTTAGCCGTGGCCAGCATCGACGACATCAGCGCAGGTCTCCTCGCCCTCAGCGAGCTGCATGCCTTCAAGCTGCGTGTCGATCCCGCCAACTTCAAGATCCTGTCCCACAACATCTTGGTGGTGCTGGCTATCTTGTTCCCCAATGATTTCAACCCCGAAGCTCATGTGGCCATGGACAAGTTCCTGGCAGCGGTGGGCCGGGCTCTGTCTGAGAAGTACCGATAAGATGTGGACAGAAGGCATCAGACCAGACGGATTGCAGCATTGATCAGCACTGTGCTCAGCTCTGTATTGTTGTAAAATATAATTAAATGTTAAATCGCACATAA

Function

NR:

description
hemoglobin embryonic subunit alpha-like

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0005833 hemoglobin complex cellular_component
GO:0005506 iron ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625265.2 True 578 mRNA 0.54 3 73686626 73687501

Neighbor

gene id symbol gene type direction distance location
LOC118937734 LOC106601065 coding upstream 6913 73678826 ~ 73679713 (+)
LOC100136590 LOC100136590 coding upstream 21719 73664084 ~ 73664907 (+)
LOC110538972 NA coding upstream 27252 73658628 ~ 73659374 (+)
LOC110538436 LOC100135791 coding upstream 32789 73652866 ~ 73653837 (+)
LOC100135791 LOC100135791 coding upstream 38676 73646792 ~ 73647950 (+)
LOC118937735 LOC106601065 coding downstream 6923 73694424 ~ 73695320 (+)
LOC110538431 NA coding downstream 68756 73756257 ~ 73758332 (+)
LOC110538429 LOC106607222 coding downstream 99958 73787459 ~ 73807192 (+)
LOC118937737 NA coding downstream 189175 73876676 ~ 73878177 (+)
LOC110538423 LOC106601285 coding downstream 317183 74004684 ~ 74034637 (+)
G1109605 NA non-coding upstream 2033 73598811 ~ 73684593 (+)
G1109665 LOC100135790 non-coding upstream 41278 73639158 ~ 73645348 (+)
G1109618 NA non-coding upstream 76480 73609567 ~ 73610146 (+)
G1109647 LOC106589010 non-coding upstream 79643 73605619 ~ 73606983 (+)
G1109606 NA non-coding upstream 90934 73581659 ~ 73595692 (+)
G1109696 NA non-coding downstream 23878 73711379 ~ 73713876 (+)
G1109697 NA non-coding downstream 29264 73716765 ~ 73718069 (+)
G1109721 NA non-coding downstream 51594 73739095 ~ 73739315 (+)
G1109722 NA non-coding downstream 51990 73739491 ~ 73739711 (+)
G1109723 NA non-coding downstream 53042 73740543 ~ 73740759 (+)
LOC110538462 rpc11 other upstream 300759 73384755 ~ 73386199 (+)
G1109505 NA other upstream 380472 73305425 ~ 73306154 (+)
LOC110538241 LOC106607115 other upstream 1668336 72016045 ~ 72019145 (+)
psmg3 psmg3 other upstream 1743827 71941515 ~ 71942804 (+)
G1105655 NA other upstream 2780197 70902905 ~ 70906429 (+)
G1109778 NA other downstream 146142 73833643 ~ 73834606 (+)
G1109786 NA other downstream 158754 73846255 ~ 73846794 (+)
G1111126 LOC106578813 other downstream 1272765 74960266 ~ 75048356 (+)
G1111805 LOC105030512 other downstream 1731288 75418789 ~ 75423163 (+)
G1111961 NA other downstream 2057638 75745139 ~ 75745620 (+)

Expression


Co-expression Network