LOC110538418 (LOC100380772)


Basic Information

Item Value
gene id LOC110538418
gene name LOC100380772
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 74042618 ~ 74060671 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625235.2
CACGCATTGTTGTTTAGAGAGCTCTGATTTTTAGTACATTGTTTTAACgattctttgttgttgttttttttttttttttaaatctaaacgAATTTTATATTTTAGTCTATCACGCTCACACTAGAAATGCCAGCCAATACCTCCTTGTCTCTGCCGGTGGATGTCAGGAAAAGgCTGGAGGTTTTGGAAAAAGATGAAGATGGGATCTCAGATGAGGACCTTGTCAAAGAAAAGGTGGAGTTGCTGCAGGACTTCCTGCATGCGGATGCCCAGGACCAGCTCAGCAGCCTGAAAGCCAAGATGAAGAGTTCAGAGATCTCAATGGATGGCTACCTCTCTAAGGTGAAGGCCCTATTGGGACGTGAGCTGTGTGTGGAGAATGGCTCACATGGGGATGTTGTGGAGCAGAACTGCAAGAATGGCAAAACAAATGGCTCTGCAGCAAATGGTGACTCTCACAAGGAAGAGGATGATGGAATCATGGACACCAAAGAGGCTGATGCCATGAAGTCTCCTTCTGCCCCCAAAGGCAAGGGAGGACGGAAGATCAAGTCAGACTCTGAGCCCAAGAAATCTCCTGGTTCCAGGGTCACAAGAAACTCTGTCTCCGGGAAACAACCGACCATCTTATCAATGTTCTCCAAAGTTCAGAAGTGCAAGTCTGATGTGAATGGAGAGGTTACAAATGGAAAAGTGGAAGAGCAGGAGAAAATAGAGCGggacatggaggaagagACACCGGAAGAGAAGCGTTTTAAAGTGGAGccagacaataaGCCAGTTGCAGAAGACGCCACTAGTGAGAAAATGAAGCAAGTGGCTGCAGCTAAGACTCCACCCCCTAAATGTCCAGACTGCAGGCAGTATCTGGATGACTCGGACCTCAAGTTATTTCAGGGAGATCCTGATAATGCGCTGGATGAGCCAGAAATGTTAACAGACGAGCGCCTTTCTCTGTTTGACTCAAACGAAGACGGCTTTGAGAACTACGAAGAACTACCCCAGCACAAGATTACCAACTTCTGTGTTTATGACAAGCGTGGCCACCTGTGTCCATTTGACTCTGGGCTCATTGAGAAGAATGTTGAGCTGTACTTCAGCTGTGCCGTCAAGCCCATCTATGATGACAACCCCTGCATGGATGGTGGGGTTCCTGCCAAAAAGCTTGGTCCCATCAATGCCTGGTGGATCACTGGTTTTGATGGAGGAGAGAAGGCCTTAATTGGGTTCACTACAGCCTTTGCTGACTACATCCTGATGGATCCTAGGGAAGAATACGCCCCCATCTTCGCCGTGATGCAGGAGAAGATCTACATGAGCAAGATGGTGGTGGAGTTCCTGCAGAAGAACCCTGACGTCAGCTATGAGGACCTCCTCAACAAGATTGAGACCACAGTGCCTCCTGCTGGGCTGAACTTCAACCGCTTCACAGAGGACACACTGCTGCGCCACGCCCAGTTTGTGGTGGAGCAGGTGGAGAGCTACGACGAGGCCGGGGACTCTGACGAGCAGCCCATCATCGTTACCCCCTGCATGAGGGACCTGATCAAGCTGGCTGGGGTCACCCTGGGAAAGAGCATGCTGTTGTACTGGAGAGCTGCTAGAAGACAGGCCATCCGCCATCCCACCAAGATTGAGAAGGACAGCAAAGGAGGGCCCACTAGAGCGACTACCACCAAGCTGGTCTACAAGATCTTTGACACTTTCTTCTCTGACCAGATTGATCAGAATGAGAAGGATGGCGGAATCAAACGCCAGCGCTGTGGTGTCTGTGAGGTTTGCCTAGTTCCAGACTGTGGCAAGTGTTCAGCCTGCAAGGACATGATCAAGTTTGGGGGTAGTGGTCGCAGCAAGCAGGCTTGCCAGAAGAGGAGATGCCCCAACCTGGCAGTAAAGGAGGCGGAGGATGATGAGAACATAGAGGAGGAAGAGTTGTTGCCTGTAAAGGCCCCTTCAAAGAAGGTGTCCAAGGCCAAGACTAAGAAGCAGAGTAATGGCAAGCTGACCTGGGTTGGAGACTCTATCAAAACTGAGGGGAAGAAGCATTACTACATGAAGGTGTGTATGGACAACGAGGTGCTGGAGGTGGGAGACTGTGTTTCTGTCAGCTCTGATGACCCATCAATCCTGCTCTACCTGGCCAGGATCACATCCCTGTGGGAGGATAACAATGGGAAGTGGTTTCATGCCCACTGGTTCTGCCGCGGTACAGATACTGTACTGGGGGAGTCCTCTGACCCTCTGGAGCTGTTCCTGGTCGAGGACTGTGAAGACATGCAGCTGAGCTACGTAGAGGGCAAGGTCAACGTCATGTACAAGGCCCCTTCAGACAACTGGTTTATGGAGGGTGGCATGGTAGAGGACATCAAGGTGATTGACGATGACAATGGGAAGAATTTCTTCTACCAGCTGTGGTATGAAGGAGACTGTGCCCGCTTTGAGACCCCGCCCACCTTCACACCCCAAGAGGACTGCAAGTTCAACTTCTGTGCCAGCTGTAGTAGGgctgaggagagggaagagaaggagactcCTCGGGTGTTTGAACCCATAAAGGACGAGGACCACGACTCCAAGGCCTTATATGCTCTGGCCTGCCTGAAGGGAGAGCAGTTCAGGGTGGGAGACAGCTGCTACCTACCGCCCGACGCATACAACTTCAGTGTGAAGGCAGCCAGTCCAGTGAAGCGTCCTCACAGGAAGGAGGACGTGGATGAGGAGTTGTACCCAGAGTACTACAGGAAGCATTCAGACTACATCAAGGGCTCCAACCTGGATGCCCCTGAGCCCTTCAGAGTGGGACGCATCAAGGAGATCTTCTGCCACAGACGCAGCAACGGGAAGGCTGACGTGTCTGAAGTCAAACTGCGCTTGTACAAGTTCTACAGGCCTGAGAACACTCACAAGGGGGCGAAGGCAGGTTACCACACAGACATCAACCAGCTGTACTGGAGTGACGAGGAAGTGACAGTCAACATGTCAGAGGTGTTGGGCCGGTGTCGTGTGGAGTACGGAGAGGACCTGAATGAGACCGTTCAGGACTTCTCCTCAGGTGGACCTGACCGATTCTACTTCCTTGAGGCTTATAATGCCAAGTCCAAGAGCTTTGAGGACCCACCCAACCATGCCCGCTCTGCTGTGAACAAGGGCAAGGGCAAAGGGAAGGGCAAAGGTAAAGGCAAAGGGAAGTCGTCTTCTGCTCAGGAGCCTCCAGACCAGGAGCCTCAGGACCCCAAGGTACCCAAGCTGCGTACCCTGGACGTGTTCTCTGGCTGCGGTGGGCTCTCTGAAGGCTTCCACCAAGCTGGTATCGCTGAGACTCTGTGGGCCATCGAGATGTGGGACCCAGCAGCCCAGGCCTTCAGACTGAACAACCCGGGCACCACAGTGTTTACAGAGGACTGCAATGTGCTGCTAAAGCTGGTGATGTCTGGAGAGAAGACCAACTCCCTGGGCCAGCGGCTGCCCCAGAAGGGAGATGTGGAGATGCTGTGTGGAGGCCCTCCCTGTCAAGGCTTCAGCGGCATGAACCGCTTCAACTCCAGAACCTACTCCAAATTCAAAAACTCTCTGGTGGTGTCTTATCTCAGTTACTGCGACTACTACAGACCCAAGTTCTTCCTGCTTGAGAACGTGAGGAACTTTGTCTCCTTCAAAAGCTCCATGGTCCTGAAACTGACTCTGCGCTGTCTTGTCCGCATGGGCTATCAGTGCACATTCGGAGTCCTTCAGGCTGGGCAGTATGGTGTAGCTCAGACGCGGCGCAGGGCCATCATCCTGGCGGCCGCGCCTGGGGAGAAGCTTCCTCGCTACCCAGAGCCCCTGCATGTGTTCGCTCCCCGGGCATGCTCTCTCAACGTGGTGGTGGACGATAAGAAATATTTCAGCAACGTCACACGAGGTAATGGCGGTGTGTACAGGACCATCACAGTCAGGGACACCATGTCAGACCTGCCAGAGATCCGCAACGGAGCGTCTGCTCTGGAGATTTCCTACAACGGAGAGCCCCAGTCCTGGTTCCAGAGGCAGATCAGAGGCACGCAGTACCAGCCCATCCTCAAAGACCACATCTGCAAGGACTTGAGTGCCCTTGTAGCTGCCCGTATGAGGCACATCCCCCTGGCGCCTGGCTCTGACTGGAGGGACCTGCCCAACATCGAGGTCCGGCTGAGAGATGGGACCTCATCCAAGAAGCTCCGCTACACCCACCCTGACAAGAAGAATGGTCGCAGCAGCTCTGGAGCACTGAGGGGTGTTTGTACTTGTTCAGGAGGGGTGCCCTGTGACCCTGCTGACAGGCAGTTCAACACACTGATCCCCTGGTGTTTGCCCCACACGGGGAACCGCCACAACCATTGGGCTGGCCTCTACGGCAGGCTGGAGTGGGACGGCTTCTTCAGCACCACAGTTACCAACCCTGAGCCCATGGGCAAGCAGGGTCGTGTCCTGCATCCAGAGCAGCACCGAGTGGTCAGTGTGAGGGAGTGTGCGCGCTCTCAGGGCTTCCCTGATACCTACCGCTTCTTCGGAAACGTTCTGGACAAACACAGACAGgTTGGCAACGCTGTTCCTCCACCACTCTCCAGAGCCATTGGACTAGAGATCAAGAAGTGTGTCCTAGAGCGGATCAAGGAGCATGACGATACAAAAGCGAATGAGAAAGAGAATGGGAAGCAGGAAGAGAACCTCAAGCAGGAGAAGATGGTGTCGGAGTAGTGCCCAGCCCTATTCCACAATCCCCTTTCCACTGAGTCATCAAATTCCCTGGAGCCCACCAAGCCACAGGAGATcctcatatttttttaaatgagcagGCCAGTCTGCAGTACCATTCCATGTTCATGATTTTCTAAATGTAATTTTAACTGTATTTGCAAATATCGGCTTGGAACGTGAATCGTATGTAGTTTTTATATGTTGTAATAAAGCTCTTATTAAATGGT
>XM_021625236.2
CACGCATTGTTGTTTAGAGAGCTCTGATTTTTAGTACATTGTTTTAACgattctttgttgttgttttttttttttttttaaatctaaacgAATTTTATATTTTAGTCTATCACGCTCACACTAGAAATGCCAGCCAATACCTCCTTGTCTCTGCCGGTGGATGTCAGGAAAAGgCTGGAGGTTTTGGAAAAAGATGAAGATGGGATCTCAGATGAGGACCTTGTCAAAGAAAAGGTGGAGTTGCTGCAGGACTTCCTGCATGCGGATGCCCAGGACCAGCTCAGCAGCCTGAAAGCCAAGATGAAGAGTTCAGAGATCTCAATGGATGGCTACCTCTCTAAGGTGAAGGCCCTATTGGGACGTGAGCTGTGTGTGGAGAATGGCTCACATGGGGATGTTGTGGAGCAGAACTGCAAGAATGGCAAAACAAATGGCTCTGCAGCAAATGGTGACTCTCACAAGGAAGAGGATGATGGAATCATGGACACCAAAGAGGCTGATGCCATGAAGTCTCCTTCTGCCCCCAAAGGCAAGGGAGGACGGAAGATCAAGTCAGACTCTGAGCCCAAGAAATCTCCTGGTTCCAGGGTCACAAGAAACTCTGTCTCCGGGAAACAACCGACCATCTTATCAATGTTCTCCAAAGTTCAGAAGTGCAAGTCTGATGTGAATGGAGAGGTTACAAATGGAAAAGTGGAAGAGCAGGAGAAAATAGAGCGggacatggaggaagagACACCGGAAGAGAAGCGTTTTAAAGTGGAGccagacaataaGCCAGTTGCAGAAGACGCCACTAGTGAGAAAATGAAGCAAGTGGCTGCAGCTAAGACTCCACCCCCTAAATGTCCAGACTGCAGGCAGTATCTGGATGACTCGGACCTCAAGTTATTTCAGGGAGATCCTGATAATGCGCTGGATGAGCCAGAAATGTTAACAGACGAGCGCCTTTCTCTGTTTGACTCAAACGAAGACGGCTTTGAGAACTACGAAGAACTACCCCAGCACAAGATTACCAACTTCTGTGTTTATGACAAGCGTGGCCACCTGTGTCCATTTGACTCTGGGCTCATTGAGAAGAATGTTGAGCTGTACTTCAGCTGTGCCGTCAAGCCCATCTATGATGACAACCCCTGCATGGATGGTGGGGTTCCTGCCAAAAAGCTTGGTCCCATCAATGCCTGGTGGATCACTGGTTTTGATGGAGGAGAGAAGGCCTTAATTGGGTTCACTACAGCCTTTGCTGACTACATCCTGATGGATCCTAGGGAAGAATACGCCCCCATCTTCGCCGTGATGCAGGAGAAGATCTACATGAGCAAGATGGTGGTGGAGTTCCTGCAGAAGAACCCTGACGTCAGCTATGAGGACCTCCTCAACAAGATTGAGACCACAGTGCCTCCTGCTGGGCTGAACTTCAACCGCTTCACAGAGGACACACTGCTGCGCCACGCCCAGTTTGTGGTGGAGCAGGTGGAGAGCTACGACGAGGCCGGGGACTCTGACGAGCAGCCCATCATCGTTACCCCCTGCATGAGGGACCTGATCAAGCTGGCTGGGGTCACCCTGGGAAAGAGGAGAGCTGCTAGAAGACAGGCCATCCGCCATCCCACCAAGATTGAGAAGGACAGCAAAGGAGGGCCCACTAGAGCGACTACCACCAAGCTGGTCTACAAGATCTTTGACACTTTCTTCTCTGACCAGATTGATCAGAATGAGAAGGATGGCGGAATCAAACGCCAGCGCTGTGGTGTCTGTGAGGTTTGCCTAGTTCCAGACTGTGGCAAGTGTTCAGCCTGCAAGGACATGATCAAGTTTGGGGGTAGTGGTCGCAGCAAGCAGGCTTGCCAGAAGAGGAGATGCCCCAACCTGGCAGTAAAGGAGGCGGAGGATGATGAGAACATAGAGGAGGAAGAGTTGTTGCCTGTAAAGGCCCCTTCAAAGAAGGTGTCCAAGGCCAAGACTAAGAAGCAGAGTAATGGCAAGCTGACCTGGGTTGGAGACTCTATCAAAACTGAGGGGAAGAAGCATTACTACATGAAGGTGTGTATGGACAACGAGGTGCTGGAGGTGGGAGACTGTGTTTCTGTCAGCTCTGATGACCCATCAATCCTGCTCTACCTGGCCAGGATCACATCCCTGTGGGAGGATAACAATGGGAAGTGGTTTCATGCCCACTGGTTCTGCCGCGGTACAGATACTGTACTGGGGGAGTCCTCTGACCCTCTGGAGCTGTTCCTGGTCGAGGACTGTGAAGACATGCAGCTGAGCTACGTAGAGGGCAAGGTCAACGTCATGTACAAGGCCCCTTCAGACAACTGGTTTATGGAGGGTGGCATGGTAGAGGACATCAAGGTGATTGACGATGACAATGGGAAGAATTTCTTCTACCAGCTGTGGTATGAAGGAGACTGTGCCCGCTTTGAGACCCCGCCCACCTTCACACCCCAAGAGGACTGCAAGTTCAACTTCTGTGCCAGCTGTAGTAGGgctgaggagagggaagagaaggagactcCTCGGGTGTTTGAACCCATAAAGGACGAGGACCACGACTCCAAGGCCTTATATGCTCTGGCCTGCCTGAAGGGAGAGCAGTTCAGGGTGGGAGACAGCTGCTACCTACCGCCCGACGCATACAACTTCAGTGTGAAGGCAGCCAGTCCAGTGAAGCGTCCTCACAGGAAGGAGGACGTGGATGAGGAGTTGTACCCAGAGTACTACAGGAAGCATTCAGACTACATCAAGGGCTCCAACCTGGATGCCCCTGAGCCCTTCAGAGTGGGACGCATCAAGGAGATCTTCTGCCACAGACGCAGCAACGGGAAGGCTGACGTGTCTGAAGTCAAACTGCGCTTGTACAAGTTCTACAGGCCTGAGAACACTCACAAGGGGGCGAAGGCAGGTTACCACACAGACATCAACCAGCTGTACTGGAGTGACGAGGAAGTGACAGTCAACATGTCAGAGGTGTTGGGCCGGTGTCGTGTGGAGTACGGAGAGGACCTGAATGAGACCGTTCAGGACTTCTCCTCAGGTGGACCTGACCGATTCTACTTCCTTGAGGCTTATAATGCCAAGTCCAAGAGCTTTGAGGACCCACCCAACCATGCCCGCTCTGCTGTGAACAAGGGCAAGGGCAAAGGGAAGGGCAAAGGTAAAGGCAAAGGGAAGTCGTCTTCTGCTCAGGAGCCTCCAGACCAGGAGCCTCAGGACCCCAAGGTACCCAAGCTGCGTACCCTGGACGTGTTCTCTGGCTGCGGTGGGCTCTCTGAAGGCTTCCACCAAGCTGGTATCGCTGAGACTCTGTGGGCCATCGAGATGTGGGACCCAGCAGCCCAGGCCTTCAGACTGAACAACCCGGGCACCACAGTGTTTACAGAGGACTGCAATGTGCTGCTAAAGCTGGTGATGTCTGGAGAGAAGACCAACTCCCTGGGCCAGCGGCTGCCCCAGAAGGGAGATGTGGAGATGCTGTGTGGAGGCCCTCCCTGTCAAGGCTTCAGCGGCATGAACCGCTTCAACTCCAGAACCTACTCCAAATTCAAAAACTCTCTGGTGGTGTCTTATCTCAGTTACTGCGACTACTACAGACCCAAGTTCTTCCTGCTTGAGAACGTGAGGAACTTTGTCTCCTTCAAAAGCTCCATGGTCCTGAAACTGACTCTGCGCTGTCTTGTCCGCATGGGCTATCAGTGCACATTCGGAGTCCTTCAGGCTGGGCAGTATGGTGTAGCTCAGACGCGGCGCAGGGCCATCATCCTGGCGGCCGCGCCTGGGGAGAAGCTTCCTCGCTACCCAGAGCCCCTGCATGTGTTCGCTCCCCGGGCATGCTCTCTCAACGTGGTGGTGGACGATAAGAAATATTTCAGCAACGTCACACGAGGTAATGGCGGTGTGTACAGGACCATCACAGTCAGGGACACCATGTCAGACCTGCCAGAGATCCGCAACGGAGCGTCTGCTCTGGAGATTTCCTACAACGGAGAGCCCCAGTCCTGGTTCCAGAGGCAGATCAGAGGCACGCAGTACCAGCCCATCCTCAAAGACCACATCTGCAAGGACTTGAGTGCCCTTGTAGCTGCCCGTATGAGGCACATCCCCCTGGCGCCTGGCTCTGACTGGAGGGACCTGCCCAACATCGAGGTCCGGCTGAGAGATGGGACCTCATCCAAGAAGCTCCGCTACACCCACCCTGACAAGAAGAATGGTCGCAGCAGCTCTGGAGCACTGAGGGGTGTTTGTACTTGTTCAGGAGGGGTGCCCTGTGACCCTGCTGACAGGCAGTTCAACACACTGATCCCCTGGTGTTTGCCCCACACGGGGAACCGCCACAACCATTGGGCTGGCCTCTACGGCAGGCTGGAGTGGGACGGCTTCTTCAGCACCACAGTTACCAACCCTGAGCCCATGGGCAAGCAGGGTCGTGTCCTGCATCCAGAGCAGCACCGAGTGGTCAGTGTGAGGGAGTGTGCGCGCTCTCAGGGCTTCCCTGATACCTACCGCTTCTTCGGAAACGTTCTGGACAAACACAGACAGgTTGGCAACGCTGTTCCTCCACCACTCTCCAGAGCCATTGGACTAGAGATCAAGAAGTGTGTCCTAGAGCGGATCAAGGAGCATGACGATACAAAAGCGAATGAGAAAGAGAATGGGAAGCAGGAAGAGAACCTCAAGCAGGAGAAGATGGTGTCGGAGTAGTGCCCAGCCCTATTCCACAATCCCCTTTCCACTGAGTCATCAAATTCCCTGGAGCCCACCAAGCCACAGGAGATcctcatatttttttaaatgagcagGCCAGTCTGCAGTACCATTCCATGTTCATGATTTTCTAAATGTAATTTTAACTGTATTTGCAAATATCGGCTTGGAACGTGAATCGTATGTAGTTTTTATATGTTGTAATAAAGCTCTTATTAAATGGT

Function

NR:

description
DNA (cytosine-5)-methyltransferase 1-like isoform X2

GO: NA

KEGG:

id description
K00558 DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625235.2 False 4943 mRNA 0.53 35 74042618 74060671
XM_021625236.2 True 4928 mRNA 0.53 34 74042618 74060671

Neighbor

gene id symbol gene type direction distance location
LOC110539171 NA coding upstream 2825 74038572 ~ 74039852 (+)
LOC110538423 LOC106601285 coding upstream 7981 74004684 ~ 74034637 (+)
LOC118937737 NA coding upstream 164441 73876676 ~ 73878177 (+)
LOC110538429 LOC106607222 coding upstream 235426 73787459 ~ 73807192 (+)
LOC110538431 NA coding upstream 284286 73756257 ~ 73758332 (+)
LOC110538417 LOC106601161 coding downstream 36260 74096931 ~ 74102318 (+)
LOC110538416 LOC106601280 coding downstream 46816 74107487 ~ 74135447 (+)
LOC110538414 LOC106607202 coding downstream 351069 74411740 ~ 74421010 (+)
LOC110538410 LOC103358203 coding downstream 423487 74484158 ~ 74529823 (+)
LOC118937740 mfap4 coding downstream 469361 74530032 ~ 74532544 (+)
G1109892 NA non-coding upstream 46837 73995483 ~ 73995781 (+)
G1109889 NA non-coding upstream 51283 73990998 ~ 73991335 (+)
G1109873 NA non-coding upstream 74508 73967903 ~ 73968110 (+)
G1109872 NA non-coding upstream 75098 73967303 ~ 73967520 (+)
G1109928 LOC106601184 non-coding downstream 5878 74066549 ~ 74073316 (+)
G1109929 NA non-coding downstream 6600 74067271 ~ 74074163 (+)
G1109946 NA non-coding downstream 32096 74092767 ~ 74093583 (+)
G1109948 NA non-coding downstream 34483 74095154 ~ 74095384 (+)
G1109950 NA non-coding downstream 42844 74103515 ~ 74104085 (+)
G1109786 NA other upstream 195824 73846255 ~ 73846794 (+)
G1109778 NA other upstream 208012 73833643 ~ 73834606 (+)
LOC110538462 rpc11 other upstream 656751 73384755 ~ 73386199 (+)
G1109505 NA other upstream 736464 73305425 ~ 73306154 (+)
LOC110538241 LOC106607115 other upstream 2024328 72016045 ~ 72019145 (+)
G1111126 LOC106578813 other downstream 899595 74960266 ~ 75048356 (+)
G1111805 LOC105030512 other downstream 1358118 75418789 ~ 75423163 (+)
G1111961 NA other downstream 1684468 75745139 ~ 75745620 (+)
G1111970 LOC106601177 other downstream 1690199 75750870 ~ 75753593 (+)
LOC110538360 LOC104946491 other downstream 1723679 75774976 ~ 75790602 (+)

Expression


Co-expression Network