XLOC_029293 (si:dkey-56m15.3)


Basic Information

Item Value
gene id XLOC_029293
gene name si:dkey-56m15.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 55035164 ~ 55040507 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00056455
ttttattttggtgtgGTGTGTGatgtcataaggctgcgccgctaccgcactgtgattcaactggagaaagGAAAAAGTGTCCAAACAGAgagaaactcctgctgaagcgactgatctccacactgttataaagatggcgtttattaaagaggagaatgaagatatgaagattgaagaaacattcacagtcaaacaggaagatctgcaggaacaaacagacctgaTGTTGCTGAAAGAAAAGACTCATCAACAGAATGAAATGGAAGAGATACAGCAAGACATGACGACTGATGAAAAACCTACACTGACGAAAAAGACTTTGTCAcgtggaagacctcggaaatccaaacctaggtgtaatttcagctgtaaacaatgtggaaaaagtttcAGTCAGAAGCCAAAGCTTGATGTTCACATAAGAGATCACACTAGGGAGAAAGCTTATACttgcaaacagtgtggaaagagcttctaTAATACAAGAAACCtaacagtgcacatgagaattcacactggagaaaggccatacacatgccaacagtgtgggaaAAGCTTCCATAAAACAGGAAActtaacagtgcacatgagaattcacactggagagaggccatacacatgccaacagtgtgggaaAAGCTTTCAAACTACAGGAAActtaacagtgcacatgagaattcacactggggagaagccttactcttgccctcagtgtggaaaaagTTATAATCAAAATAGCAaccttgaagtccacatgagaactcacaatgGAGGAAGAACTTTTGTTTGCacacagtgtggaaaaagttttgctcaaaaacaaaatcttgacctccacatgaggattcacactggagagaaaccttacacatgcacagagtgtggtaaaagtttcccatataaaagcacactcaaacaccacatgatagttcacaccggagagaagccgtttgcatgtgcgcagtgtggaaagagcttcacatgtAATGCTAACCTCAggaaccacatgaatggtcacactggaaccatagtgttcacatgtgatctgtgtggaaagagtctcacacacAAATACTCCATAAAGAaccacatgaagactcactcaggAGAGCGTTTTATATGCAttgagtgtggaaagggctttaaacataaaagaagcctcagCAATCACATggagcttcacaatggagagcagagtcctcaaaattaaggccttgtccacacaaacatgaGTATATTCATAACAGCAGCCttttcatgtagtttggctgttAATTGACGTGAGtagttatttataaactactttcgagaggatcacatgcttatgattgtccacggcTGGTTCCACATTAAccaacacatgattcaccaatcagacgattcctaactcactattaATAAccagag
>TCONS_00056456
atggcgtttattaaagaggagaatgaagatatgaagattgaagaaacattcacagtcaaacaggaagatctgcaggaacaaacagacctgaTGTTGCTGAAAGAAAAGACTCATCAACAGAATGAAATGGAAGAGATACAGCAAGACATGACGACTGATGAAAAACCTACACTGACGAAAAAGACTTTGTCAcgtggaagacctcggaaatccaaacctaggtgtaatttcagctgtaaacaatgtggaaaaagtttcAGTCAGAAGCCAAAGCTTGATGTTCACATAAGAGATCACACTAGGGAGAAAGCTTATACttgcaaacagtgtggaaagagcttctaTAATACAAGAAACCtaacagtgcacatgagaattcacactggagaaaggccatacacatgccaacagtgtgggaaAAGCTTCCATAAAACAGGAAActtaacagtgcacatgagaattcacactggagagaggccatacacatgccaacagtgtgggaaAAGCTTTCAAACTACAGGAAActtaacagtgcacatgagaattcacactggggagaagccttactcttgccctcagtgtggaaaaagTTATAATCAAAATAGCAaccttgaagtccacatgagaactcacaatgGAGGAAGAACTTTTGTTTGCacacagtgtggaaaaagttttgctcaaaaacaaaatcttgacctccacatgaggattcacactggagagaaaccttacacatgcacagagtgtggtaaaagtttcccatataaaagcacactcaaacaccacatgatagttcacaccggagagaagccgtttgcatgtgcgcagtgtggaaagagcttcacatgtAATGCTAACCTCAggaaccacatgaatggtcacactggaaccatagtgttcacatgtgatctgtgtggaaagagtctcacacacAAATACTCCATAAAGAaccacatgaagactcactcaggAGAGCGTTTTATATGCAttgagtgtggaaagggctttaaacataaaagaagcctcagCAATCACATggagcttcacaatggagagcagagtcctcaaaattaa

Function

symbol description
si:dkey-56m15.3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000104262

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00056455 False 1407 mRNA 0.41 3 55035164 55040507
TCONS_00056456 True 1077 mRNA 0.41 2 55035361 55039830
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Neighbor

gene id symbol gene type direction distance location
XLOC_029292 NA coding downstream 19586 55015116 ~ 55015578 (-)
XLOC_029291 si:dkey-56m15.6 coding downstream 65391 54955852 ~ 54969773 (-)
XLOC_029290 CR388413.2 coding downstream 269361 54759510 ~ 54765803 (-)
XLOC_029289 CR388413.3 coding downstream 276561 54754825 ~ 54758603 (-)
XLOC_029288 CR388413.4 coding downstream 284340 54741215 ~ 54750824 (-)
XLOC_029294 NA coding upstream 27514 55068021 ~ 55069157 (-)
XLOC_029295 BX465836.2 coding upstream 123562 55164069 ~ 55165627 (-)
XLOC_029296 BX465836.1 coding upstream 125190 55165697 ~ 55167082 (-)
XLOC_029297 znf1039 coding upstream 132208 55172715 ~ 55178568 (-)
XLOC_029298 si:dkey-191j3.2 coding upstream 146863 55187370 ~ 55437051 (-)
XLOC_029286 NA non-coding downstream 494406 54538574 ~ 54540758 (-)
XLOC_029299 BX546503.1 non-coding upstream 218461 55258968 ~ 55268396 (-)
XLOC_029301 NA non-coding upstream 381424 55421931 ~ 55422635 (-)

Expression

Expression of XLOC_029293(si:dkey-56m15.3) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.

Expression of XLOC_029293(si:dkey-56m15.3) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.

Co-expression Network