LOC110538406 (LOC106607190)


Basic Information

Item Value
gene id LOC110538406
gene name LOC106607190
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 74637224 ~ 74639489 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625213.2
GTTCTCGTTACGTCACTGGTGGGGGTTGTGTTTTTCAGTCGCGCTCAGCACCTTTGGTTCCATTCCTTGTCTGGAGATTCAAGTAGATGGACACTGGTGGTTCTAGCACCGCTTCTTTTGGAATTATTCTTCTTCAGTGTGGATTTGTGCTTATCTGTGTTGGAATTATGTTGTCTGACTCAATACAGAAACGCTATAAAGGTCATCAGTGAGTTTAGTCGTCTGCCTTCTGGTCTGCAACCGCTGCCTTTGAAGTAGGTGTGAATGCTTCATCTCTCTggagacacccaccacctccgCTACTAGAGTCTGCCACCTCACTATCAGGACCAGGCAACCAGCCAGAATGGGCAACCAGCTAACAGAGATCGCCCCCAACACTCCTTTCCTCCCCAACTTCCAGTCTCTGCATGTGGTCGTCATCGGCCTGGACTCTGCAGGAAAGACCTCCCTTCTGTACAGACTAAAGCTCCGAGAATTTGTGGAGACTATCCCCACAAAGGGCTTCAACACTGAACGGATTAAAGTAGCAGTTGGAAGCTCGCGGGCCACCACCACCTTCCAGGTGTGGGACGTGGGCGGTCAGGAGAAGCTGCGGCCCCTGTGGAAGTCATACACGCGTCGCACCGATGGCCTGGTGTTTGTTGTGGATGCTGCAGAAACTGAGCGTATGGAGGAGGCCAAAGTGGAGCTCCACCGCATCAGTCGCTCGGCAGAGAACCAGGGAGTACCAATTCTGGTGCTTGCCAACAAGCAGGACTTGGACTCTGCAGTCTCTGCTGTGGAGGTGGAGAAGGCCTTGGCCCTCCACGAGCTTAGCAACTCCACACTGCACCACACCCAGGGATGCAGCGCGCTGAACGGTCAGGGGCTCCAACCCGGCCTGGAGAAACTATATGAAATGATCCTAAAGAGGAAGAAGCTGCTCAGACACAGTAAGAAGAAGAGATGAACTGTGCGGCTGAGCTTCCGAAAGGCGCTTCGCCCGCAGAATGGACCTCGTTGGTGTTCCTTGGAATTTTATGGGAATTTTGTGCCCCGGAGGACCTGCTTCTGGTTTCCCAGTGACGGTCAGTCCAGAGGATGGAGAAATAGACCTGTTATACTATACGTTGGACACCGCACAGACTACGTTCAGCCCTTTACAGTGGCTTTTTTCCCCCGATAAACTTTCCCACCTTTTTTATCAAGTTGTGCCGACACGGTCTAGTCCAAACGTCCAGTGACGTATGGTACTTCTAATTTAGTTTACCTTGTAGTTCACTTTGTTTCATGGAGGTGGTTCACCGTTGGAAAAGACGACGCTTTTGTAGATCAAAAGAGGGACTGTATTTCAACCCAATGTTCAGATGGCATTGGAACTGAAATGCCTGCTAGCACGAGGCCTGAGGCTGCTAGCCATGATGCAAGTTTTCACCACAGTTTTGCTTGTCATGGTAGACTTAAATGTGTGAAGTTGTTACAACCAATATGTTTTTACATTCTGTACATATTTTTTGTTGTAATACTTACAAATGAATAAATTATTGAAGACACTATCTA

Function

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 4D

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07945 ARL4; ADP-ribosylation factor-like protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625213.2 True 1542 mRNA 0.49 2 74637224 74639489

Neighbor

gene id symbol gene type direction distance location
LOC110538405 LOC106607193 coding upstream 4547 74623308 ~ 74632677 (+)
LOC110538404 LOC106607191 coding upstream 14264 74610922 ~ 74622960 (+)
LOC118937743 NA coding upstream 56682 74575886 ~ 74580542 (+)
LOC118937741 NA coding upstream 70015 74563904 ~ 74567209 (+)
LOC110538412 LOC106607198 coding upstream 85892 74545711 ~ 74551332 (+)
LOC110538402 LOC106601265 coding downstream 91045 74730534 ~ 74761760 (+)
LOC110538400 NA coding downstream 130516 74770005 ~ 74776525 (+)
LOC110538398 LOC106607185 coding downstream 137282 74776771 ~ 74784585 (+)
LOC110538397 LOC106607181 coding downstream 152924 74792413 ~ 74831994 (+)
LOC110538393 LOC106601259 coding downstream 291373 74930862 ~ 74933801 (+)
G1110195 LOC106607192 non-coding upstream 29545 74605123 ~ 74607679 (+)
G1110175 NA non-coding upstream 57615 74579179 ~ 74579609 (+)
G1110154 NA non-coding upstream 102208 74534589 ~ 74535016 (+)
G1110146 NA non-coding upstream 138427 74495060 ~ 74498797 (+)
G1110083 NA non-coding upstream 257956 74378980 ~ 74379268 (+)
G1110204 NA non-coding downstream 548 74640037 ~ 74640264 (+)
G1110205 NA non-coding downstream 954 74640443 ~ 74640729 (+)
G1110215 NA non-coding downstream 19567 74659056 ~ 74659390 (+)
G1110216 NA non-coding downstream 20542 74660031 ~ 74660345 (+)
G1110952 NA non-coding downstream 24449 74663938 ~ 74664363 (+)
G1109786 NA other upstream 790430 73846255 ~ 73846794 (+)
G1109778 NA other upstream 802618 73833643 ~ 73834606 (+)
LOC110538462 rpc11 other upstream 1251357 73384755 ~ 73386199 (+)
G1109505 NA other upstream 1331070 73305425 ~ 73306154 (+)
LOC110538241 LOC106607115 other upstream 2618934 72016045 ~ 72019145 (+)
G1111126 LOC106578813 other downstream 320777 74960266 ~ 75048356 (+)
G1111805 LOC105030512 other downstream 779300 75418789 ~ 75423163 (+)
G1111961 NA other downstream 1105650 75745139 ~ 75745620 (+)
G1111970 LOC106601177 other downstream 1111381 75750870 ~ 75753593 (+)
LOC110538360 LOC104946491 other downstream 1144861 75774976 ~ 75790602 (+)

Expression


Co-expression Network