LOC110538402 (LOC106601265)


Basic Information

Item Value
gene id LOC110538402
gene name LOC106601265
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 74730534 ~ 74761760 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625205.2
GGTCTGCGGCACGCAGTGACAAGTTGAGTCCACTCAAAGATAGCCAGTCATGTAGCTTTAGTTCGTACTCGGTCTTCAAACACATTCAATGGCGAAGCGAACGACGGCATCGTGTCGTAATtatagaatatatattttttattgctCACATTACAACGTGTTTTGAGCGGTAGTGTTTTTTAACGCGCGTTCTTTTGGCATACCATTTTGGCAGAGCGCGCCCCACTCTGAAAGTGACACCTTGGATCGTTGACGGATTGGGGAAAATGCCTCATCAAAGTTTGTCATCGTTAAGAACTCAAACTTTACAATTAATATATTTAAGCTTTTGCAAAATTAACTTGGAATGAATGAAGAATGCATATcgtttgggaaatatttttgaTTTTTCAAGCATATTTCATCTGTACATCAGCACAGCTAATTTCACCAAAGATTCATGATGGTTGGTGGGCGTACAAAGATGCAGTCCAAGGGAGCTTTGTTCCAGTACCATCCTTCTGGGGGCTAGTGAATTCCGCCTGGAACCTGTGTGCCATGGGAAAGAGGCAGTCGCCGGTCAACGTCGAGACCAGTCACATGATCTTTGACCCCTTCCTCACCCCTCTACGTCTCAACACAGGCGGACGCAGCAAGATGGGAGGCACCATGTACAACACAGGGCGCCACGTGTCGCTGCGGCCAGACAAGGCTCACCTGGTGAACATCTCCGGTGGGCCTCTGGGTTACAGTCACCGGCTGGAGGAGATACGCCTGCACTTCGGTAGCGAGGACGGCCAGGGCTCGGAGCACCTGCTCAATGGACAGTCCTTCCCTGCAGAGGTGCAACTTATACACTACAACCAGGAACTCTATGCCAACTACAGTGAGGCAGCCAAGAGCCCCAATGGCGTAGCTATTGTGTCCATATTCATAAAGATATCCGAGTCTCCAAATGTATTCCTGAATCGCATGCTGAACAGAGACACCATCACGAGAATAACATACAAACATGACGCATTCTTACTCATGGGGCTCAACATAGCAGATCTATATCCAGACACTACACGTTTTATAACATACGAGGGCTCCATGACTATCCCGCCCTGCTTCGAGACAGCCACCTGGATCCTCATGAACAAACCTGTGTACGTCACACAGATGCAGaTGCATTCTCTGCGACTGCTGAGTCAGAATGAGCCATATAAGATATTCCTCAGTATGAGTGACAACACGCGGCCCGCCCAGCCTCTCCTACAGCGCTGTATCCGCACCAACATCAACTTCAGCAAGCAGGGCCGAGACTGCCCCAACAACCGTGCCCTGAGGCCCCAGTATCGAGTAAACCAGTGGCTTCTGAAGTAGGAAAAATATGAACATGCTGTACAATACAACAGGATAAAAACGAAATATGCGATCCTGATTCTCAAGACTTTATTTGAATGTGGAAATAATACATTATCAGCAGAGAGGCTGTTTTTTGAATATGTTTGAGATTGCAAAGTAAGACAAGGAAAGATTGAAAAGTGTAACTTCTAAGGCTGCACAACTGTAATTCTTCTACAGAGCTTATGGAAATGGGCTGAATGGAAATTCAGCAGGCTCCGCCATTTACTGACCTCTGCAGTGGAGATAACGAGGACCTCTtttatgacatcatcatcatcagattCACTTGAGTACCCAAAGATCTCAAAGGACCAACACTTCTTGAAATTAGCTAAATGTAATCACAGATACAACCATAATGTGTTTTGATACCAAAAGCATTCCATCAGATCTAACATCAAGCTAGGAATCTGAATATGATGGGTGCTCTTCTGGTGATGAAAGCTTCTACATAACCATGTCACAAGCAAAAGGTGTACTGAATAAATGTTACAAATGCAGAAAcatttcctgaccatgtgacctaaCCAGGAAAAATCTGGGCCCCAGTAAAACACCAGGGCAAGAGATTTTCCTGATCAGGCCACATAGTCAGGAAACACTCCTAGCCATAGACTTGGGAAATCCAGTATTTTATACTGTATTTGCTAAACTTTTCTAGCCATTTTGGGCCATTTGCCTTTTCTCTGTTTAATTGTTTACAATTTCATTCTGTTTATTTCAATGATAGCAGCCCAATTAACATGTTTCAGAGAATTATGTAAGATAAAATAACACTTTACATAAGGCCTATATAGTATATGCTGTTTAAGAATTGTATATTGTCTAGCACTGAATAGAGCATGGGACGTGATTTGTCTGCAAATTCTTTAAGCAGTCACAAGGCATTCCTTATCAATTATTTATCCTCATTTTCAATTCTGCGCTGTGTATGGCGTTACAGGCaatgtgggtttgtgtgtgtgtgtgtgtgcgcacatgtgtACATGACTGTCTGTGTGCGCTCTCTCCTGAGCATTGTATTTCTCATTAAATAGGATAAATCTC

Function

NR:

description
PREDICTED: carbonic anhydrase-related protein 10-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625205.2 True 2415 mRNA 0.44 9 74730534 74761760

Neighbor

gene id symbol gene type direction distance location
LOC110538406 LOC106607190 coding upstream 91045 74637224 ~ 74639489 (+)
LOC110538405 LOC106607193 coding upstream 97857 74623308 ~ 74632677 (+)
LOC110538404 LOC106607191 coding upstream 107574 74610922 ~ 74622960 (+)
LOC118937743 NA coding upstream 149992 74575886 ~ 74580542 (+)
LOC118937741 NA coding upstream 163325 74563904 ~ 74567209 (+)
LOC110538400 NA coding downstream 8245 74770005 ~ 74776525 (+)
LOC110538398 LOC106607185 coding downstream 15011 74776771 ~ 74784585 (+)
LOC110538397 LOC106607181 coding downstream 30653 74792413 ~ 74831994 (+)
LOC110538393 LOC106601259 coding downstream 169102 74930862 ~ 74933801 (+)
LOC110538391 LOC106601294 coding downstream 179559 74941319 ~ 74942346 (+)
G1111002 LOC106604990 non-coding upstream 4833 74725298 ~ 74725701 (+)
G1111001 NA non-coding upstream 6632 74723602 ~ 74723902 (+)
G1110998 NA non-coding upstream 11262 74718989 ~ 74719272 (+)
G1110984 NA non-coding upstream 31909 74692663 ~ 74698625 (+)
G1110966 NA non-coding upstream 49657 74680662 ~ 74680877 (+)
G1110993 NA non-coding downstream 3757 74765517 ~ 74766894 (+)
G1110987 rpl23 non-coding downstream 23055 74784815 ~ 74786587 (+)
G1110989 NA non-coding downstream 70379 74832139 ~ 74836922 (+)
G1111035 NA non-coding downstream 76943 74838703 ~ 74840368 (+)
G1111036 NA non-coding downstream 79532 74841292 ~ 74841617 (+)
G1109786 NA other upstream 883740 73846255 ~ 73846794 (+)
G1109778 NA other upstream 895928 73833643 ~ 73834606 (+)
LOC110538462 rpc11 other upstream 1344667 73384755 ~ 73386199 (+)
G1109505 NA other upstream 1424380 73305425 ~ 73306154 (+)
LOC110538241 LOC106607115 other upstream 2712244 72016045 ~ 72019145 (+)
G1111126 LOC106578813 other downstream 198506 74960266 ~ 75048356 (+)
G1111805 LOC105030512 other downstream 657029 75418789 ~ 75423163 (+)
G1111961 NA other downstream 983379 75745139 ~ 75745620 (+)
G1111970 LOC106601177 other downstream 989110 75750870 ~ 75753593 (+)
LOC110538360 LOC104946491 other downstream 1022590 75774976 ~ 75790602 (+)

Expression


Co-expression Network