LOC110538392 (LOC106601294)


Basic Information

Item Value
gene id LOC110538392
gene name LOC106601294
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 74939090 ~ 74940118 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625184.2
TGCTGGGTCAGGGGTTTGAACAATGGAGCTGGGAATTCTTTAGGTTTGGTCAGGTATAAAAGAAAGGGTTAAACCAGGTAGGAATCAGTTCAGGAGCAGCAACCAGCAGCACAGTGAGCAAACATGTCCACCAGCATGAACATGGGCAGGATCGTCTTCTACGAGGACAGGAACTTCCAGGGTCGTTCCTATGAGTGCAGCAGCGACTGCGCTGACATGTCCTCCTACCTGAGCAGGTGCCACTCCTGTAGGGTTCAGAGCGGCTGCTTCATGGTCTACGACCGCAACAACTACATGGGAAACCAGTACTTCATGAGGAGGGGAGAGTACTCTGACTTCCAGAGTATGATGGGAATGACTGATATCAGGTCCTGCCGCACGATCCCCATGCACAGAGGATCCTACAGAATGAGGATCTACGAGAGAGATAACTTCGGAGGTCAGATGCACGAGATGATGGACGACTGTGACTCCATCATGGACCGTTACCGTATGTCCGACTGCCAGTCCTGCAACGTGATGGATGGCCACTGGCTGATGTACGAGCAGCCCCACTTCAGAGGCAGGATGACTTACATGAGGCCCGGAGAGTACAGGAACTTCAGGGATATGGGCATGAGTGGCATGAGGTTCATGAGCATGAGGCGTATCACTGATATGTGCTAGATATGTTATGTTGACCAAATAAAAGTGATTGATAATCCGTAA

Function

NR:

description
gamma-crystallin M3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625184.2 True 708 mRNA 0.51 3 74939090 74940118
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110538394 LOC106601258 coding downstream 2034 74837361 ~ 74937056 (-)
LOC110538399 rl23 coding downstream 150949 74784815 ~ 74788141 (-)
LOC110538969 LOC106607189 coding downstream 218616 74714655 ~ 74720474 (-)
LOC110538407 LOC106607192 coding downstream 328305 74605118 ~ 74610785 (-)
LOC110538408 LOC100194731 coding downstream 347244 74588449 ~ 74591846 (-)
LOC110538389 LOC106601255 coding upstream 164352 75104470 ~ 75113299 (-)
LOC110538387 NA coding upstream 277450 75216004 ~ 75220939 (-)
LOC110538381 LOC106601248 coding upstream 351827 75288118 ~ 75366262 (-)
desi1a LOC106601247 coding upstream 491431 75431549 ~ 75434649 (-)
LOC110538375 LOC106607167 coding upstream 524969 75465087 ~ 75501246 (-)
G1111458 NA non-coding downstream 42844 74896029 ~ 74896246 (-)
G1111455 NA non-coding downstream 46000 74892703 ~ 74893090 (-)
G1111450 NA non-coding downstream 58613 74880164 ~ 74880477 (-)
G1111445 NA non-coding downstream 73319 74865429 ~ 74865771 (-)
G1111441 NA non-coding downstream 78042 74860727 ~ 74861048 (-)
G1111530 NA non-coding upstream 59633 74999751 ~ 75020640 (-)
G1111558 NA non-coding upstream 95709 75035827 ~ 75045190 (-)
G1111592 NA non-coding upstream 132214 75072332 ~ 75072582 (-)
G1111578 NA non-coding upstream 137415 75077533 ~ 75078313 (-)
G1111579 NA non-coding upstream 140947 75081065 ~ 75081361 (-)
G1111451 NA other downstream 58283 74880498 ~ 74880807 (-)
G1111424 LOC106601260 other downstream 114500 74817975 ~ 74824590 (-)
G1110941 NA other downstream 288327 74650283 ~ 74650763 (-)
G1110701 NA other downstream 733899 74204221 ~ 74205191 (-)
LOC110538422 LOC106601282 other downstream 859813 74068285 ~ 74079316 (-)
G1111672 NA other upstream 250067 75190185 ~ 75190431 (-)
G1112697 LOC106607147 other upstream 856332 75796450 ~ 75796798 (-)
G1112997 NA other upstream 1440810 76380928 ~ 76381727 (-)
G1113013 NA other upstream 1472822 76412940 ~ 76414211 (-)
LOC110538323 NA other upstream 1488430 76428548 ~ 76478939 (-)

Expression

LOC110538392(LOC106601294) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.
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LOC110538392(LOC106601294) Expression in each Bioproject

Bar chart with 5 bars.
LOC110538392(LOC106601294) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
End of interactive chart.

Co-expression Network