LOC110538387


Basic Information

Item Value
gene id LOC110538387
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 75216004 ~ 75220939 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475747.2
ttgtgtagattggtgggaatttgtttttaaatacattttagaataaggctgtaacgtaacaatgtggaaaaagtcaaggggtctgaatacttccagaATGCACGGTATGCTCCAATCCCAAATGAATGGGAAGATTGGAGCATAAAGCTTGATCTACTTGAGATGGACATGGAGTCATAGACTTCAAATGACAGGGCTGAAAACCTCTAAAACGTACATTTTGGATTGAACTAAGCTAGCCCTTTGTGTTCCATATGAAGAAGGGTAACTAGTGAGGGAGTTAGG
>TU1263861
TCGCTTTATTGAGTTTGACAATTAACAGgcccactttaaaaaaaaaaaagatactcAAATAGGATGTCACAACATTACAATGAGTAATAAAAAAgggcttttttaaaaatgtacacAACCTGAAATAAAACAGTAATCAGACTCAACATTCCCTTTAAGATCCTTGCTAACCCACAAGGTGGCGCTGTGCACAATGCAACTCATGAAGAAAAAAAAGGTCAAAGGGACAGCGATTTTCATCAATAATAGTCACAGTAATAGATTGCTCAAATAGCGTGTATTGCACATGTGTACACATATATGCACGTATACACGTGAGTAGCAATTAGTATAAACACATTTGTATTGTCGCAACAGGAAAGCATTTGAAACAACACATGACATTAAGGAATGTGCTTTGATCAATTCAAAACGTCTGCATTAGTTATGACCAGAAGAGAGAAAgaatatatttaaaatataagGTAAAAGACAGTCACATTCAAACATCCAACCACAGAAAGTGGAGATTGTGTCCTTCTACTGCGCGGGTGTTTCAATGTAAGAGACACACTTCTTTCCAAAGTCAAAAAAATATACAATTACTCTTTGAACCTTGACGATCATAGGTCACTACATATACACAACGTATGAAATATCAATAAATATACATTTACTGAATAGCAAAATAGTGTGGCTGCAACAATAAAGCTATCTTCAATGGTGGATAAGTCGATATAATTTACAGACTTGGATGTCTTCCAGTATCTGTTTAGACAGAAAGAACACATTTGCATGGTTGCCACTTGTAGTAGTTGTTTTGACTAAGGCAACACACAAAAACATTCCTCTATTCAGAGTAGACTTTCTTGGTttgattttttgtttttttgctgcCCCTCCAACATACCCACAGGAAAAAAGCCCTGACCTACAAAACACACGTCAGTTCAATTAAAGGGTAATTATGTCATATGCCATCTCACCCACGGGACAGCCCGATAACCCTTATATATGCCATACAACGTGGAGGTACAAAACTATGCACCAAATCTCAAAATGGTCAATGAtctaaatgaaaacattacaaaacaaggTTACAGCAGTCCCATGTACTGcaagtacaccccccccccccccccccccacacacacacacaccatagccaCATGTAAAAGGAAGTAGGAACCACTGTGTATATTACATGTGAGTACAGTGGCATCCACCAACAATTTTGCAAGTGATGAGTGTTTCAATTCCTACCCCGGTGACACGATTGTGACAACACCGTGATTAGAGTTCAGTCAAATGGCGAATGCCTGTTTTTTCTGTGACATCAGGTCACATGCTCCGCCTGGGAAGTAGTACCACTGAAAACCAACACCGAAAGAGCATACCATGGCCGGTATGACAATAGGAGCTATAAGGGAACTGTATGACGTTAAAGGGGTAGTTCACTCACAATTCAAAGTTTCAGACATTTTCAGACCTCGAAGGTGCTCTAATGTCAACATGATTCCAAGTCCCACACCATTGGTTAAGTAGATCCAGCTAtaccgtgcattcggaaagtattaagacaccttcactttttccatattttgttacattacagccttattctaaaatggattaaatagtttcccccccttaatctacacacaataccccataatgacaaagcaaaaacaggttcttagattatacatttttttaaatgtaaatatcacatttacataaatattcagaccctttactcagtactttattgaagtaactttggcagcaattacagtcttgagtattcttgggtatgatgctacaagcttggctcacctgtatttggggagtttctcccattcttctctgcagagcctcaAGCTCTGaccggttggatggggagcgtcgctgcacagccattttcaggtctctcctgatgttcgatcggattcaagtcccgtttctggctgggccactcaaggtcattcagagatttacacgaagccactcctgcattgtcttggctgtgtgcttggaaggtgaaacttcaccccagtctgaggtcctgagcgctctggagcaggtttccatcaaggatctctgtacttgttccattcatctttccctcgatcctgactagtctcccagtccttgccactaaaaaacatccccatagcatgatgctaccaccaccatgcttcaccggagggatggtgccaggtttcctccagatgtgacgcttggtattcaggccaaataattcaatcttggtttcatcagaccagaatcttgtttctcatggtctgagagtctttaggtgccttttggcaaactccaagcgggatgtcatatgccttttacggaggagtggcttctgtctggccactaccataaaggcctgattggtggagtgttgcagagatggttgtccttcgggaaggttctcccatctccacagaggaactctggagttctgtcagagtaactattccccgaccaaggcccttctcccccgattgctcagtttggccgggcggcaagctctagaaagagtcttggtggtttcaaacatcttccatttaagaatgatggaggccactgggtgcttggggaccttcaatgctgcagaaattttttggtacccttccccagatctgtaccgacacaatcctgtctctgagctctacggacaactccttcgacttcatggcttggtttttgttctgacatacactgtcaactgtgggaccttgaccatgtccaatcaattaaatttaccacaggtggactccaatcaagttgtagaaacatctcaaggatgatcaatggaaacaggattcaccggagctcaatttcaagtctcatagcaaaatgtCTGAATTCacatgtaaataaggtgttttttttgttttgttttaaaaaaaatcttagatgcatttgcaaaaattctaaaaaaacagtttttgcttggtcattatggggtattgtgtagattggtgggaatttgtttttaaatacattttagaataaggctgtaacgtaacaatgtggaaaaagtcaaggggtctgaatacttccagaATGCACGGTATGCTCCAATCCCAAATGAATGGGAAGATTGGAGCATAAAGCTTGATCTACTTGAGATGGACATGGAGTCATAGACTTCAAATGACAGGGCTGAAAACCTCTAAAACGTACATTTTGGATTGAACTAAGCTAGCCCTTTGTGTTCCATATGAAGAAGGGTAACTAGTGAGGGAGTTAGGCGTTGACACCCCTTTAACGTTTATGAAAACATTGTCACTGTATAGTTATTACAGTATGTAGATAAGTTCAATTTACAGTTGTGTGACAAAGGGACAAAAGTACCTTACGATGTTGAGTGGACCAGTAGAGAATTGACTATATGATTAGAGGGAACAACTCTACAGAAATATCCTATTACATAATgagtttttttttacctcaataAAGGAGGACAAATGAGATGCAGAAGACTTGGTCAGTGTTTTGTTACATTGCttgaaataaaacaaaatgaTCAATGTAGACCAGCACTCTGCAGCACACATTATCTTCGGAGTATGCTGGTGAAAgtggtacttttgtatactttttagccggTAGTTCTGAAAGTTGTGGTCACGAGCAAAAAGTGGGCCCCAACAATTGTGTATTACGTGACATACGTGCACCATGTCCTTagatctccctctttctctgctgTTGATGTACCAAGTACATTTCGCTAGCTGGCGAGGGGCAGAAGCTCATTGGTTTTACTCAAATTGCTAGAGGGCTGGCCTAGGTGGGGGAAAATAAGGAAAATGCCGCAGCACAGCATCCAAAAAAACAGTGGCTTTTAAACTAGGGATTGCGTAGCTACATGAGGTAAGACCGTAATTCTGGTCATAGATTATGCATCTATGAacgacacattgacacatccagccgaAAGcgagaggtttaaaaaaaatacttagtagtcgccaaagttccagagcatgtctttaaggGAGGTGTCGGTTACCATTCTCTAGTAGATATACTTGATTTGTATGAATTCCTCAAGCATGATGATTGTGCTAATTcccactgtaaatatatataataagtaTTTCATTTAGTATAAGTATTTAATTTGTGTGATCATATAGGTGTCAAGTGAAAACACTTTTCATTGATTGAGAAATATAAATATTGATGACGACAACGGAGGCCAGATAACACAGCACCTGGACACTAAGTCAAACAAAGGGTTTATGGCAGCTGACAAGTGGGCAACAGTTTCAAGGGATTGGGGTATTGCAGTGTAAACATCTAAAGTGGTGCTTGCTCATGATTATTTGCCAAATGAGATCCACCCCATATCACAATTTctgttgtcttttttttttgtggaaaaaACAAAATGGCACTTAGGACAAAACATTGATTGCAAAACCAGCACGATGTGTGCTTAAGGTGGCTTTagcatacattattattattattttttttttaactcttctCAAATATAATATTCATATCCAATTTGATTGGATTAACACTGTTATTGTCATTATTCATATACATCTTATATTTGatttttttacaaaataaaacGTTTGTTTAAAAAAAGTGACCAAGTTCAGTCCTTCCTCTCTAAATAAATGGAAAAACAATGAGTTCGTTATTGATACCGTCTCAGGTTGAGGGGTTTGCCAGAGCAGGACAGGATGCAGTATTTACAAGTGACAGGAAGTGAGTGACATGGCAAAAAGTTGGTCGTTGTAGCGTTCAAATTTCCTCACAATCATACCGTCAGCCGCATTTGTACGGGTCGGAATT

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475747.2 False 285 mRNA 0.39 2 75217568 75217976
TU1263861 True 4812 lncRNA 0.40 2 75216004 75220939
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110538389 LOC106601255 coding downstream 104269 75104470 ~ 75113299 (-)
LOC110538392 LOC106601294 coding downstream 277450 74939090 ~ 74940118 (-)
LOC110538394 LOC106601258 coding downstream 280512 74837361 ~ 74937056 (-)
LOC110538399 rl23 coding downstream 429427 74784815 ~ 74788141 (-)
LOC110538969 LOC106607189 coding downstream 497094 74714655 ~ 74720474 (-)
LOC110538381 LOC106601248 coding upstream 73969 75288118 ~ 75366262 (-)
desi1a LOC106601247 coding upstream 213573 75431549 ~ 75434649 (-)
LOC110538375 LOC106607167 coding upstream 247111 75465087 ~ 75501246 (-)
LOC110538376 xpp3 coding upstream 283616 75501592 ~ 75510877 (-)
rbx1 rbx1 coding upstream 316301 75534272 ~ 75537366 (-)
G1111690 NA non-coding downstream 3725 75213614 ~ 75213843 (-)
G1111689 NA non-coding downstream 3959 75213221 ~ 75213609 (-)
G1111687 NA non-coding downstream 9195 75207980 ~ 75208373 (-)
G1111685 NA non-coding downstream 10661 75206668 ~ 75206907 (-)
G1111684 NA non-coding downstream 12068 75205225 ~ 75205500 (-)
G1111692 NA non-coding upstream 8838 75226814 ~ 75228392 (-)
G1111696 NA non-coding upstream 12731 75230707 ~ 75230927 (-)
G1111701 NA non-coding upstream 18310 75236286 ~ 75236517 (-)
G1111702 NA non-coding upstream 18959 75236935 ~ 75237151 (-)
G1111703 NA non-coding upstream 22129 75240105 ~ 75240710 (-)
G1111672 NA other downstream 27137 75190185 ~ 75190431 (-)
G1111451 NA other downstream 336761 74880498 ~ 74880807 (-)
G1111424 LOC106601260 other downstream 392978 74817975 ~ 74824590 (-)
G1110941 NA other downstream 566805 74650283 ~ 74650763 (-)
G1110701 NA other downstream 1012377 74204221 ~ 74205191 (-)
G1112697 LOC106607147 other upstream 578474 75796450 ~ 75796798 (-)
G1112997 NA other upstream 1162952 76380928 ~ 76381727 (-)
G1113013 NA other upstream 1194964 76412940 ~ 76414211 (-)
LOC110538323 NA other upstream 1210572 76428548 ~ 76478939 (-)
G1113043 LOC106601201 other upstream 1266396 76484372 ~ 76485285 (-)

Expression

LOC110538387 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 6.
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LOC110538387 Expression in each Bioproject

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LOC110538387 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network