desi1a (LOC106601247)


Basic Information

Item Value
gene id desi1a
gene name LOC106601247
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 75431549 ~ 75434649 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625161.2
GAAGTTCAGATGCGAGGAGCTGTAGTTGGGGATTTGATAGAGAATATCATTGCAatgcttttttaaattttataACAGAGACATTCTTCCACAGAACCTCTACAGTGCTATGTGGACGCATGGAGGCGCTGATGCACTACCAAGCTCATGAGATGCCAATCTGCAATTTTATGGGGGACAACTGTCTCTGACAGCCAGGGTACTTGTAGATTGTAATCAGACATCTAAATATCTAACGTCATAGGTACAACGTTCAGGTAATTTAGCTGATAATATAATCTCATTTTTCAGTAGACAGCAACCTTGCAAAACCagcagtcagtagaaaggcaagCTAACCGCAAAATAGCTAACGTTACtgttagcttagctagctaacataaacaCATATTTGGGGGTTTAACGTAATGGATAAAAAtgacacaacaacatacagtgtaCAACTGTATATATACGACCTGTCAAGAGGAATGGCTCGCAATCTCAGCCCAATCATGTTAGGAAAACAACTTGATGGCATTTGGCACTCAGCCATTGTGGTTTATGGAGACGAGTTCTACTTTGGAGGAGTGGGTATTTCCAGCTGCTCACCGGGGGGAACAATGCTTGGTTCCCCAGACACTGTGGTGGAATTGGGAAACACAGAGGTGACAGAGGAAATCTTCATGGACTACCTGTCCTCGCtaggagagaatacatacagAGGTGACAAGTATAGGTTGTTTGAGCACAACTGTAACACCTTCACTAATGAGGTGGCCCAGTTCTTAACAGGCCGGAAGATCCCTTCTTACATCACAGACCTGCCCTCTGAAGTGCTCTCCACACCCTTTGGTCAGATACTCCGGCCTATACTGGACTCCATCCACATCGCTCCTCCTGGGGGGAACATCATCAACGGTCGCCACAGCTAAACTGCCTGAACTGCACACAGTAGTATTTAGACATGTTCTAATTTACATTTTCAAAATGGAGGTGGGTTATTGATGAAACCGTGGAGGGTGAATCTCAGTGAGTCTAGTCAGTCACACTGCTTTTGTACTGCGTATGCTTGGTTTTAGTATGATTGTTTTGTAACTCCCCACCAGCAATGCTCTTGCCTTTtgtatgtttaaaaaaatgttgctTCAGTTTCCAGTTTTTGTTTACGGACCTTCCTTATTGCCTCTAATGGTATGATCCTGCACAACATGAACTTTCTCACAAATCTTCCAATATCATCAATATGATTTATAAGAAGGTTAGCATGTATCTCAAGTCAGCATTTCAGCATGACTTCCAATGAACTACTCCACTTTCCACCAGATGGTGTGTGCTATATACACCTCTATGCCTTCACCTCTCTCACCTTAGTGTTAATGATGCTGATAGTGTGATATGAAGGATGAATGCTGAAGTGCACAAAATCTGCATTAGTTCTCTGGATGAAGAAACAGACATCTCAGAAATGTAATTTATTATGGAAAAGTTTGTACAattttggggtcaagtttgggATCAAATCATACATATTCTTGTATCATTTTCATTGGGCCATCAGTAGGAGCAATAACTCTTCACATATCTATACTTACTAGACTAGGCATGAAACGTGTAAAGTCCTTTTATTAAATGCACGTATTCACTGCATCTCCTGGCACTGGTTAACTATAGCGTCATTCAGTAGAACAGTACAGTAAACTGTATGTTCTGTAAAAGACAGCACCTCTGGTATCGCATCAGACAGGTAATTACAGCATAGCATGTTTCATAAAAAGAATGACCACAAATAGGTGCTTGTATGTTGAAGGAGACAAGGCCCTTCACATTGGTATGTTGCTCACGTAACCACCTTCAACAATCAACCTGACCAATGAAATGTATTGTACACCTCatccttattttatttttttttttttttcaggatCAGTTGCTGGCTGCTAAATGTAATGATTTCAGTAGATATTTATGAATACTATATTAGTTATGTATGGTTATTTATGTATGGATGATATTGTTTGCACATTGTTTGCTTGTTTTGTAATTGTATCTAAATAAAGCCATTCACTCCAAATTTTA

Function

NR:

description
desumoylating isopeptidase 1-like

GO: NA

KEGG:

id description
K22762 DESI1, PPPDE2; desumoylating isopeptidase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625161.2 True 2058 mRNA 0.40 6 75431549 75434649
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Neighbor

gene id symbol gene type direction distance location
LOC110538381 LOC106601248 coding downstream 65287 75288118 ~ 75366262 (-)
LOC110538387 NA coding downstream 213573 75216004 ~ 75220939 (-)
LOC110538389 LOC106601255 coding downstream 318250 75104470 ~ 75113299 (-)
LOC110538392 LOC106601294 coding downstream 491431 74939090 ~ 74940118 (-)
LOC110538394 LOC106601258 coding downstream 494493 74837361 ~ 74937056 (-)
LOC110538375 LOC106607167 coding upstream 30438 75465087 ~ 75501246 (-)
LOC110538376 xpp3 coding upstream 66943 75501592 ~ 75510877 (-)
rbx1 rbx1 coding upstream 99628 75534272 ~ 75537366 (-)
LOC110538966 LOC106607166 coding upstream 102905 75537554 ~ 75552963 (-)
LOC110538374 LOC106607164 coding upstream 120884 75555533 ~ 75561122 (-)
G1112517 NA non-coding downstream 3478 75409453 ~ 75428071 (-)
G1111731 NA non-coding downstream 144608 75286712 ~ 75286941 (-)
G1111726 NA non-coding downstream 150541 75279160 ~ 75281008 (-)
G1111725 NA non-coding downstream 155605 75275510 ~ 75275944 (-)
G1112553 NA non-coding upstream 53296 75487945 ~ 75491023 (-)
G1112562 NA non-coding upstream 94712 75529361 ~ 75529671 (-)
G1112563 NA non-coding upstream 95168 75529817 ~ 75530104 (-)
G1112565 NA non-coding upstream 104790 75539439 ~ 75539655 (-)
G1111672 NA other downstream 241118 75190185 ~ 75190431 (-)
G1111451 NA other downstream 550742 74880498 ~ 74880807 (-)
G1111424 LOC106601260 other downstream 606959 74817975 ~ 74824590 (-)
G1110941 NA other downstream 780786 74650283 ~ 74650763 (-)
G1110701 NA other downstream 1226358 74204221 ~ 74205191 (-)
G1112697 LOC106607147 other upstream 361801 75796450 ~ 75796798 (-)
G1112997 NA other upstream 946279 76380928 ~ 76381727 (-)
G1113013 NA other upstream 978291 76412940 ~ 76414211 (-)
LOC110538323 NA other upstream 993899 76428548 ~ 76478939 (-)
G1113043 LOC106601201 other upstream 1049723 76484372 ~ 76485285 (-)

Expression

desi1a(LOC106601247) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
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desi1a(LOC106601247) Expression in each Bioproject

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desi1a(LOC106601247) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network