LOC110538377 (f10a1)


Basic Information

Item Value
gene id LOC110538377
gene name f10a1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 75510999 ~ 75517780 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938445.1
TGTCATATGTTTCTATCTAATTAATGCCTGCGTTAAAGAAATCTACGGAACAACATCCCCATCGACTAGTATTTTAAAGCGATTGTTGTGGAGGCTTGATTGCACCCCCTCTACTCGAAGCTACCCGTCGTTGAAGAGCTGTCTGGGCATACAGCGTGTTCTGGACCTGTGAAGTGAGAATGGACCCGCGGAAAGTGCATGAGTTGAAGGCCTTCGTGAAGTTGTGCGACGAAAATCCCTCCATATTGCACCTTCCCGAGCTCGGTTTCCTCCGGGCCTGGTTGCAAGGaatGGGAGCTACAATTCCACAAGCCCCCCAAAATGACTCCTCATGCAAGGGTGGGTGTCCATGTGCTGGCGCTCCTCCCCCTGCCTCTGCTCCTGAGCCCCATGCCCCCTCTGAGAGTGAGGAGAGTGAACTAGAGATCGACCAAGATGGGGTGATTGAGCCAGACACAGACGAACCTCAGGAGATGGGAGACTTTGAAAATCTGGAGGTGACAGAGGAAATGATGGACCAGGCCAACGAGAAGAAGATGGAAGCTATCGAAGCGTTAGGAGAAGGTGACTTGCAAAAAGCCCTGGACCTCTTCACTGAAGCCATCAAACTCAATCCACGGGTAGCTATCATGTATGCCAAGAGGGCTAGCGTCTACATCCGGATGCAGAAACCCAATGCAGCTAAGCGGGACTGCGACAGAGCCATTGACATCAACCCAGATTCTGCACAGCCCTACAAGTGGAGGGGGAAAGCTCACAAGTTGCTGGGGCACTGGGAGGAAGCAGCTAAGGACCTGGCCACTGCCTGCAAACTGGACTACGATGAGGACGCCAGCGCTATGCTGAAAGAGGTCCAGCCCAAGGCTAACAAAATCATTGAGCACCGGCGCAAGTATGAGCGCAAGAGGGAGGAGCGAGAGATCAAGGACAGGAAGGAGAGGGTAAAGAAAGCGAGGGAAGAGCATGAGAAAGCTCAGAGGGAGGAGGAGGCTAGACAAGCAGCAGGAGGAGGTGGCTTCCCAGGTTTCCCAGGTGCTGGCGGTTTCCCAGGGGGTGCTGGCGGTTTCCCAGGGGGTGCTGGCGGTTTCCCAGGGGGTGCTGGCGGTTTCCCAGGGGGGGCTGGCGGTTTCCCAGGGGGGGCTGGCGGTTTCCCAGGGGGGGCTGGCGGTTTCCCAGGGGGGGCTGGCGGATTCCCAGGGGGGGCTGGAGGCTCTCCTTTCGGCATGCCTGGTCTGGGAGAGCTCTTTAACGACCCAGAGGTGCTCAACGCCATGAAGGACCCTGAGGTGATGGCAGCTTTCCAGGATGTGGCTCAGAACCCAGCTAACATCGCCAAGTACCAGGGTAACCCCAAGGTCATGGCCCTCATCACCAAGCTGAGCGCCAAGTTCGGGAGCCCTTCgccctagaggagaggaggtgaagaaaAAAGAGGGGCAATTTAAAAAGAGGGGAGCGGGAAGAAGAACGAGTGGCAGGAGAGTAGCAAATGGATGTCAGGTGTTGGGAGAGCTAAAAAGCTTATTTGAGATTATTCCACTGTGTATGGATCAAATGGGTAATGTTGATTGGCATATGGGTAAAGAGGAGACTAGAGGCATGCAGCAAGTTTTACACTAGACAAGGgtttgtggagggggggggggtcaacagcAACTCTTATACTGTATGTTCTTAAATGGAGCCCACCTATTTGGGGCTGTTAGCTCTTAGTGGTTACTCAAGCCAACTCATGGATACTGATGGGAACACTACTGGTTAATGATGGGGAATCAAAACAGCCTGTCAGAGCCTTCTCATTCAGAATTCCCATCAACTCCTCTTCCCACCCACCCCCATCCCTTGTTGTTTTTTACCTGAATCTGGAATAGTCAAACAGGACTCACACATTAGACACCAGCTCAGAGGAACATTTTAGAGACATTATTATATGGAGTTGTCATCTTCTGTGTTTTCTACTGAGCCAACCAAATCAATGGCTATTTGTTTTCTATCAGGAGTGGATGTGGTAAAGCTATTTACCTCAGGTTTTCTGTTTTACTCACTTTTACTGTAACGTACATTATTTTAATGTCTGACTCTCCTTCCAAATGCAAAAAAACAAGTAATATTACTATTTTGTTTGATTTTGAAACCACAATGGAAATATCAATTCGAATCAATAAATATTTGGTTGTTGCAAAT

Function

NR:

description
PREDICTED: hsc70-interacting protein isoform X3

GO: NA

KEGG:

id description
K09560 ST13; suppressor of tumorigenicity protein 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938445.1 True 2184 mRNA 0.51 13 75510999 75517780

Neighbor

gene id symbol gene type direction distance location
LOC110538378 LOC106601246 coding upstream 47519 75443988 ~ 75463480 (+)
LOC110538383 LOC106601250 coding upstream 231457 75236926 ~ 75279542 (+)
LOC110538384 LOC106601293 coding upstream 277452 75231002 ~ 75233547 (+)
LOC110538385 LOC106607175 coding upstream 282595 75221851 ~ 75228404 (+)
LOC110538386 LOC106607176 coding upstream 294553 75136261 ~ 75216446 (+)
LOC110538373 LOC106601242 coding downstream 75971 75593751 ~ 75608737 (+)
LOC110538372 LOC106601241 coding downstream 101558 75619338 ~ 75623953 (+)
LOC110538366 LOC106607160 coding downstream 120474 75638254 ~ 75649590 (+)
LOC110538368 LOC106601238 coding downstream 133139 75650919 ~ 75659715 (+)
LOC110538369 csdc2 coding downstream 142185 75659965 ~ 75664321 (+)
G1111798 NA non-coding upstream 96933 75393498 ~ 75414066 (+)
G1111312 LOC106601248 non-coding upstream 216336 75288131 ~ 75294663 (+)
G1111307 NA non-coding upstream 226540 75284139 ~ 75284459 (+)
G1111306 NA non-coding upstream 226894 75283884 ~ 75284105 (+)
G1111250 NA non-coding upstream 229722 75279802 ~ 75281277 (+)
G1111871 NA non-coding downstream 16960 75534740 ~ 75536458 (+)
G1111872 NA non-coding downstream 20505 75538285 ~ 75538518 (+)
G1111874 NA non-coding downstream 21828 75539608 ~ 75539812 (+)
G1111890 NA non-coding downstream 45636 75563416 ~ 75563759 (+)
G1111911 NA non-coding downstream 69361 75587141 ~ 75587364 (+)
G1111805 LOC105030512 other upstream 87836 75418789 ~ 75423163 (+)
G1111126 LOC106578813 other upstream 462643 74960266 ~ 75048356 (+)
G1109786 NA other upstream 1664205 73846255 ~ 73846794 (+)
G1109778 NA other upstream 1676393 73833643 ~ 73834606 (+)
LOC110538462 rpc11 other upstream 2125132 73384755 ~ 73386199 (+)
G1111961 NA other downstream 227359 75745139 ~ 75745620 (+)
G1111970 LOC106601177 other downstream 233090 75750870 ~ 75753593 (+)
LOC110538360 LOC104946491 other downstream 266570 75774976 ~ 75790602 (+)
LOC110538356 LOC106607146 other downstream 330825 75838066 ~ 75853712 (+)
G1111968 LOC106601158 other downstream 377832 75895612 ~ 75895873 (+)

Expression


Co-expression Network