Gene
RNA
| Item | Value |
|---|---|
| gene id | rbx1 |
| gene name | rbx1 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 75534272 ~ 75537366 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| rbx1 | Predicted to enable cullin family protein binding activity and ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of cullin-RING ubiquitin ligase complex. Predicted to be active in nucleus. Is expressed in female organism. Orthologous to human RBX1 (ring-box 1). |
| description |
|---|
| RING-box protein 1-like |
| id | name | namespace |
|---|---|---|
| GO:0045116 | protein neddylation | biological_process |
| GO:0006950 | response to stress | biological_process |
| GO:0006513 | protein monoubiquitination | biological_process |
| GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | biological_process |
| GO:0019005 | SCF ubiquitin ligase complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0031463 | Cul3-RING ubiquitin ligase complex | cellular_component |
| GO:0031464 | Cul4A-RING E3 ubiquitin ligase complex | cellular_component |
| GO:0031465 | Cul4B-RING E3 ubiquitin ligase complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0019788 | NEDD8 transferase activity | molecular_function |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021622428.2 | False | 738 | mRNA | 0.44 | 4 | 75534277 | 75537366 |
| NM_001160687.2 | False | 607 | mRNA | 0.45 | 5 | 75534278 | 75537311 |
| TU1264854 | True | 490 | lncRNA | 0.40 | 2 | 75534272 | 75534985 |
75,532,000
75,533,000
75,534,000
75,535,000
75,536,000
75,537,000
75,538,000
75,539,000
75,540,000
75,541,000
NC_048576.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110538376 | xpp3 | coding | downstream | 23400 | 75501592 ~ 75510877 (-) |
| LOC110538375 | LOC106607167 | coding | downstream | 33031 | 75465087 ~ 75501246 (-) |
| desi1a | LOC106601247 | coding | downstream | 99628 | 75431549 ~ 75434649 (-) |
| LOC110538381 | LOC106601248 | coding | downstream | 168015 | 75288118 ~ 75366262 (-) |
| LOC110538387 | NA | coding | downstream | 316301 | 75216004 ~ 75220939 (-) |
| LOC110538966 | LOC106607166 | coding | upstream | 188 | 75537554 ~ 75552963 (-) |
| LOC110538374 | LOC106607164 | coding | upstream | 18167 | 75555533 ~ 75561122 (-) |
| LOC110538370 | LOC106601240 | coding | upstream | 93689 | 75631055 ~ 75637902 (-) |
| LOC110538367 | LOC106601236 | coding | upstream | 126723 | 75664089 ~ 75677539 (-) |
| LOC110539170 | plbl1 | coding | upstream | 172062 | 75709428 ~ 75713862 (-) |
| G1112563 | NA | non-coding | downstream | 4173 | 75529817 ~ 75530104 (-) |
| G1112562 | NA | non-coding | downstream | 4606 | 75529361 ~ 75529671 (-) |
| G1112553 | NA | non-coding | downstream | 43254 | 75487945 ~ 75491023 (-) |
| G1112517 | NA | non-coding | downstream | 106206 | 75409453 ~ 75428071 (-) |
| G1112565 | NA | non-coding | upstream | 2073 | 75539439 ~ 75539655 (-) |
| G1112587 | NA | non-coding | upstream | 48017 | 75585383 ~ 75585746 (-) |
| G1112590 | NA | non-coding | upstream | 54016 | 75591382 ~ 75591600 (-) |
| G1112596 | NA | non-coding | upstream | 81305 | 75618671 ~ 75618940 (-) |
| G1112577 | LOC106607162 | non-coding | upstream | 82963 | 75620329 ~ 75621351 (-) |
| G1111672 | NA | other | downstream | 343846 | 75190185 ~ 75190431 (-) |
| G1111451 | NA | other | downstream | 653470 | 74880498 ~ 74880807 (-) |
| G1111424 | LOC106601260 | other | downstream | 709687 | 74817975 ~ 74824590 (-) |
| G1110941 | NA | other | downstream | 883514 | 74650283 ~ 74650763 (-) |
| G1110701 | NA | other | downstream | 1329086 | 74204221 ~ 74205191 (-) |
| G1112697 | LOC106607147 | other | upstream | 259084 | 75796450 ~ 75796798 (-) |
| G1112997 | NA | other | upstream | 843562 | 76380928 ~ 76381727 (-) |
| G1113013 | NA | other | upstream | 875574 | 76412940 ~ 76414211 (-) |
| LOC110538323 | NA | other | upstream | 891182 | 76428548 ~ 76478939 (-) |
| G1113043 | LOC106601201 | other | upstream | 947006 | 76484372 ~ 76485285 (-) |
