LOC110538372 (LOC106601241)


Basic Information

Item Value
gene id LOC110538372
gene name LOC106601241
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 75619338 ~ 75623953 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625146.2
TTTCTGAAGAGGCGTTAAGCTCATGAATAAGACAACAGTGCTCGCAGTAGGCTATGACTGTCGGGATCTGTGGTGTTTGTTTTGACAACGTTTTAATTTGTGAAACGGGTTTCAAAGCAACAGACTGAAAACTGCTTTGACTTCATTTATCCACGGATATTGCTAACAGTGCCTGGGAAACTACACTCAAGGCGCCTCTGCAGCCTAGGTCGGATCCACAGAAATCGTTTCCTATTGTTTTGAAGAAGATTATGGACATTCCCCCACCTAATATTCTCGAAGGCGACGATGAAATAGAGAAGAAGAAGTTGTGCTCTGCCGATAATGGCGAGGCCGGTGTTGGAGGGGCCAGTGGTGGGACTGGAGGTACAGGCATTGGAGGGGTGTCCGCCTCCCTTACCCCTGCCATCTGGGAGAAGACCATCCCCTATGATGGGGAGACCTTCCACTTGGAGTACATGGACCTAGATGAGTTCCTGCAGGAGAATGGCATCCCAGTCACCCTAGAGGAGGAGCTGCAGAAGAGCCTGGCCCAGGAGGAAACCAAGGGGACAAGACCCCCTTTCACCACCCCTGACACAGAGACTGTCACACTCACCTTAGAGCCAGCTGAACaagagaaggaagaagaagatGGGGACGATGAAGATGCTGTGTCTGGGTTTGACGCAGCGGAGGTTGAAGTgtctaaaaataaaaaagAGGGGAAGTCTGCAGACCGACTCACATCCACTCCCATCGACCCGGAGGACATTGAGGTGGACATCAACTTCCAGCCGGACCCCACAGACCTGGTGCTGTCCAGCGTGCCTGGGGGTGAGCTGTTCAACCCACGGAAACACAAGTTCTCTGACGAGGACCTCAAACCACAGCCCATGATCAAGAAGGCCAAAAAGGTCTTTGTGCCCACTGAGCAGAAGGACGATAAATACTGGTCGAGGAGGAAGAAGAACAACGTGGCAGCCAAACGTTCACGTGACGCCCGGCGGCTGAAGGAGAACCAGATCACAGTGCGCGCTTCGTTTCTGGAGAGGGAAAATGCGGCGTTGCGGCAACAAGTGGCTGAGTTGCGAAAGGACTGTGGTCGCTGCAAGAACATCATGTCCCGATATGAAGCCAAATACGGACCATTGTAAGGGACAAACTTTATCTTTCAAGAAAAGAACCGAAAAATAAAAACACCCCCAAAACGCAGACACAAAGATAATCTGAATTGCACTGCTTTCATGGTGAACACCGGTCACTACGTCAAGTTCTAGATCCTTTCCAACATGACAGTGGAGGCATGGATACACACTGTCAGGGAGTCAGGCAACATCATGAAGGGTTGTGGAGAGCGACTGGCTCCTACACATACAGGGACTCAATTACAGACATAACATGTATATTGTCTACTGCTAGTCAGGTCTTATCACTGGCCAGAGAAGTCAGAGAAAGCTGGTGGAGAAAAGCAGGCTTGTGAAAAGAAGCGCTTAAAAgttacacacacatttatacagcGTATTAATGGGTTGTTTTGTGGACCAAAGCATGAACATCATCAGTGATGAGTAGTGAATATTGAAAGTTGTCCCCCTGCCCTCTTCCCACTGTTTGCAGTAActgactgtctctcctctgtttcaAGTACTTTTGCAGAGGCTCTGAAGAAGGACATGTGAAATCTTGATTTATTCATAATTGGGTAGGGGAGAAAACAATGAATAACAAAACGGACAGATTGAGGGTTGCACCTCCGTGATCGTACACAGAGGAAATAATTGATATTGGTCAGACAAAGGGCGAGATAGTGGAGTTTTCTTGTCACAGATTTTCTATGTCTGTCTTTGTACCAcacactgaggtgtgtgtgtggagagaattCTTTGTAGATAGATTGTGTTACCCCTGTTTTGCACTTAACCCTTCCAAAGCAACACCTTGTGGGTGAAGATTAGATATAGGGCTGGGCGGGTACTTTTTTCCTATTACGACATGACCCACACATTTTAAGCAATTGTTTATACAAAAACTAACTCTGCTTCTAATATCTTTCCCCAAAAAACAGTATtttggggggagaaagaggtgtttTAAAAAGTAGTATGGCAAAGACTGTCTTTTCTCAGTTTGTTTATTGCTCATAGGTCAGGCATTTATAAAGGCCCTCACTGGTGGAGGGGTATTTAATATGTATGTTGGTTTATGTCATTGCTCACTGCAAGTAGAGGGCACTGTATATTTGTGCCTCCTGTAGTTTGTCTGGGATTAAGAGTCAGTTATTTTGTCAATACCTGTGTCTTTTTATCTTAATTTACTGCTATATGATCAATGCTGTATTTATTCTAACAATGCATCTTGATTGATGTGCAACAATCTGTCAGATTTATATTTCTTTAGAGGAAAGAAAACGATGAACCAATGATTAAGCAGGGATCTCAATGGACAAACTGTGGTTTTTGGTTTATTTTTAACCGGTTTTCAACCAGAATTTtacagaaatatattttttttctaaagACAATTTTCCTATTTACCTCATCCAACACTTCCATTGTTTATTGCTCCTATCTTATTGGATACCAATAATTTTGAAGGGTTGGGGTGCCTATGACAATGTTGACAGGAATTGTGAGCACAAGAAAGGTGGTTTTGGTTAAgtttgatttaaaaaatgataGGTCAAGGTACAGAGTCGACGCAGAGTTCTGTTTGTCAAAGTGGCTGTGCCTCAATTGTTGCAAATACTACATAGCAGACTGTTAAGTAAAGGGACTCAGTCTCTTAAGTGTCTGATGAATGTGTTCCTGTGCCGATCTTCATTATTATGCATATTAGAATCATACATGTGGCAATAATATTAATTTTACTCTGCTTTGTTTCTGTAAAAtaactatgatagacaaaatgtTGAAATGGTGCAAAGTAATGTGTGCTTCCAATTAAGTTTCCCAGTAATCCTGCTGCACGAAAATGTGTTAATGGTGTAATGTTTGCATCTGTTTTACACTAAGTGTATGTACTTATGTCTGTAAATTAAAGGATCAAAACAAATATTTACTGAATTTGCTTCAATGGAAGGCATTGCATTGCGCTGACATtcatattttgaatgcttaggcATATAGTTGTTTAAACAGTGATTTTAAACTTGGTGCAGAATCTTGTCAGATCGATAGACCAACATTTAGATATGATAGTCATTTTAGTATGATATGAAGTTAAAGCTGGATCAAAGCCAGTTTGTATGTAGAAATTAAACTCCTCAAGTCC

Function

NR:

description
thyrotroph embryonic factor-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625146.2 True 3252 mRNA 0.43 4 75619338 75623953

Neighbor

gene id symbol gene type direction distance location
LOC110538373 LOC106601242 coding upstream 10601 75593751 ~ 75608737 (+)
LOC110538377 f10a1 coding upstream 101558 75510999 ~ 75517780 (+)
LOC110538378 LOC106601246 coding upstream 155858 75443988 ~ 75463480 (+)
LOC110538383 LOC106601250 coding upstream 339796 75236926 ~ 75279542 (+)
LOC110538384 LOC106601293 coding upstream 385791 75231002 ~ 75233547 (+)
LOC110538366 LOC106607160 coding downstream 14301 75638254 ~ 75649590 (+)
LOC110538368 LOC106601238 coding downstream 26966 75650919 ~ 75659715 (+)
LOC110538369 csdc2 coding downstream 36012 75659965 ~ 75664321 (+)
LOC110538365 LOC106601233 coding downstream 56555 75680508 ~ 75698504 (+)
LOC110538363 LOC106601232 coding downstream 104169 75728122 ~ 75735536 (+)
G1111922 NA non-coding upstream 6021 75612999 ~ 75613317 (+)
G1111921 NA non-coding upstream 6463 75612599 ~ 75612875 (+)
G1111914 NA non-coding upstream 29684 75589431 ~ 75589654 (+)
G1111913 NA non-coding upstream 30338 75588786 ~ 75589000 (+)
G1111926 NA non-coding downstream 921 75624874 ~ 75625085 (+)
G1111928 NA non-coding downstream 2630 75626583 ~ 75627163 (+)
G1111887 LOC106601240 non-coding downstream 7365 75631318 ~ 75636032 (+)
G1111930 NA non-coding downstream 12626 75636579 ~ 75637927 (+)
G1111932 NA non-coding downstream 55544 75679497 ~ 75679850 (+)
G1111805 LOC105030512 other upstream 196175 75418789 ~ 75423163 (+)
G1111126 LOC106578813 other upstream 570982 74960266 ~ 75048356 (+)
G1109786 NA other upstream 1772544 73846255 ~ 73846794 (+)
G1109778 NA other upstream 1784732 73833643 ~ 73834606 (+)
LOC110538462 rpc11 other upstream 2233471 73384755 ~ 73386199 (+)
G1111961 NA other downstream 121186 75745139 ~ 75745620 (+)
G1111970 LOC106601177 other downstream 126917 75750870 ~ 75753593 (+)
LOC110538360 LOC104946491 other downstream 160397 75774976 ~ 75790602 (+)
LOC110538356 LOC106607146 other downstream 224652 75838066 ~ 75853712 (+)
G1111968 LOC106601158 other downstream 271659 75895612 ~ 75895873 (+)

Expression


Co-expression Network