LOC110538369 (csdc2)


Basic Information

Item Value
gene id LOC110538369
gene name csdc2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 75659965 ~ 75664321 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625144.2
TCTTGTTATGCCTACAAATTTTCCGGGAAACAAGCATCACGCCCATTCTCTCAACTACGGTGTGATCTCAGCCAGCGGCAGCTGCGCAGCCTCAACAACACACTGCAGATCAGGGTATTCCGCGACTACGCGTATTTACTGGAGTTATTTATTTAATTGATGTTATATAATGGTAACTGACAAGGCACACACCCGTTCTCTACCGACAAAACGGACTCTAGCAATGCAGCCCCTTAAGAAACTTGCTGAAACAAACTGACCTGTGTACTCAATAGCAAGATATATTAAAGCAGTGACAGTGAGCAGAAAAACACATAACTGGAGTGTCAGCATCAGGCCAGGTGGTGAAGAACCAGTAGAGTGGTAAGAAGAACGACCTGGCCTGTGACTCATCCATGGCAGACCCCAGCCTGACGTCCCCCTCAGAGGCCCCTCTGCGCTCCCCCCGGGCTGCACCcgtttccctctccttcccctttttGAGGGAGGGCAGCCGTGTGTGGGAAAGAGGAGTACCACCCCTGCCCCGGTCACTGCCCAGCCCACTGCCCACCAAACGCAACCGCACCTATTCAGCCACGGTGCGGGCCACCTCAGGGCCAGCGTTTAAGGGCGTGTGCAAGAGCTTCTGCAGGTCACAAGGTCATGGCTTCATCCATCCCTCCAATGGCGGAGATGACATCTTTGTTCACATCTCGGATATCGAGGGCGAGTATGTCCCAGTAGAAGGAGATGAGGTCACATACAAAGTCTCCCGGATCCCACCCAAAAACCTGAAGATCCAGGCCGTGGAGGTGAAGATTGTTCATCTGAACCCAGGGACGAAGCATGAGACCTGGTCTGGCCAGATCATCAGCCAGCTAGACGAGAGCTAGGCTTCAGCGCTGGCCTGTTTATCTACACTTGGCTACAGGGAGGGCTAGGGTGGGAGGTTGAGGGGTCTGGCTAGGGCAGGCAGGGACGGCCAACTGGTGCTGGAGAGTCTGTctaaatcaggtgtgctagagCTGGGCTGAAACAAAACTCTAGATACACTGACTGGCTCCCCAGGACACAAGTTGGCCATCTGTGAACTAGGATGTGGTTGGTACAGACTGGATTGATAAGTCATAAAAGCAAGTAAGGGAGGAGAATATGTTCAACCTGAAGGTACTGAAAATGGGTGAGGGGACAGAGCAGAGTGGTGGAGGAAATAGAATGAGAAATCCGACACCATTTTGAGGAGAAGCATTACTATTGGTATGAAATCAAAAGGAGGTTGGAGAGAAAATAACTGACGAAGGTTTAGAGGTACAGAATTGGAAACGTCTGATTGAGAGAGCAAtcgagaagggagggagagatggatgtcATGGGAGACAAAAAAACGTCTGATTGAGAGAGCAAtcgagaagggagggagagatgatgtCATGGGAGACAAAAAACGTCTGATTGAGAGAGCAAtcgagaagggagggagagatgatgtCATGGGAGACAAAAACGAGCTTGGAAAAATGATTTATATTTTACTGTGAATGGAAAAGCCACTATTAATATTTTCTCGAGGTACACAACCATctttgtatttatatatatttatttgatccttttgtttagattttttttgtatccGTTAGTTTTGAGGTTACTGGATTTAAGTTTTGGGTATTGTAGTCAAACAAATGCACTTAACTTGAACTTCCATTCTGAAATACTGCCGAACCGACTACAACTCCTATTAGGCTTTATCATGTGGCAATATGTAGTCCTGTTTGCAAATTGTAACTCACCATGATGGTATGAGCAAATTACTGCAAGGTCTTTGAAACTATTTGAAACTTTTCTATTGTCTGAGagacactgtaacacactgtcaatggaattgaaatacattttaatgTTTTTGTTTAAGTTTTGATATGATCATTTGATTGTTACTGAACCATTATTCATATTTGTTTCATGTCTGCCTATTATGTTTAGCATTTCTCAATATTTAGGAAATTtctatgcatatttatatccttcattcttaatgttttgggttgttttatttcatattttagttTTAGTTAAAATGCTAGGTTTTCCATTGGTCACAGTTCAGAGCATTTTCTGTTACACAAGCCACTGTGGCTATAGTTTACCCTCATTTATTTCTATGTGAGCCTTGAAAGAGCACTAATAACATTTTATGATTCACAATTATGATGGCTTATCTTTTTTTAGTATTTATCTTTGGAGATAAGGGTGTAGGCACACATTAGAATGCCATGCCTTAGTTATAATTTCCATCTGTTGTACAAAAAAATAACAAGTCACACTTGGCACAATGatataaaataatttattacaatGAACATAGTTCAAATGAATACAGTACTCAACAATCACATGATGATTTCACAATTAGTGTATGTCGATCAAACTGTACAAGTGAGTCCACTGGACCTTTGTCATTCAGGAAGGTCTAATGGCCTTTGGCAGAAGGGTGAAGACATCCAGATTATTATATTTGTAGCAGACGGCATTAACCTtttaataaaatttgatttgatacaa

Function

symbol description
csdc2 Predicted to enable mRNA 3'-UTR binding activity. Predicted to be involved in regulation of mRNA stability. Predicted to be located in nucleus. Predicted to be active in cytoplasm.

NR:

description
cold shock domain-containing protein C2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625144.2 True 2547 mRNA 0.43 4 75659965 75664321

Neighbor

gene id symbol gene type direction distance location
LOC110538368 LOC106601238 coding upstream 250 75650919 ~ 75659715 (+)
LOC110538366 LOC106607160 coding upstream 10375 75638254 ~ 75649590 (+)
LOC110538372 LOC106601241 coding upstream 36012 75619338 ~ 75623953 (+)
LOC110538373 LOC106601242 coding upstream 51228 75593751 ~ 75608737 (+)
LOC110538377 f10a1 coding upstream 142185 75510999 ~ 75517780 (+)
LOC110538365 LOC106601233 coding downstream 16187 75680508 ~ 75698504 (+)
LOC110538363 LOC106601232 coding downstream 63801 75728122 ~ 75735536 (+)
LOC110538360 LOC104946491 coding downstream 110655 75774976 ~ 75790602 (+)
LOC110538359 LOC106601229 coding downstream 127934 75792255 ~ 75821063 (+)
LOC110538357 kc1e coding downstream 159167 75823488 ~ 75835962 (+)
G1111930 NA non-coding upstream 22038 75636579 ~ 75637927 (+)
G1111887 LOC106601240 non-coding upstream 23933 75631318 ~ 75636032 (+)
G1111928 NA non-coding upstream 32802 75626583 ~ 75627163 (+)
G1111926 NA non-coding upstream 34880 75624874 ~ 75625085 (+)
G1111922 NA non-coding upstream 46648 75612999 ~ 75613317 (+)
G1111932 NA non-coding downstream 15176 75679497 ~ 75679850 (+)
G1111938 NA non-coding downstream 46032 75710353 ~ 75710571 (+)
G1111940 NA non-coding downstream 47377 75711698 ~ 75712027 (+)
G1111942 NA non-coding downstream 50310 75714631 ~ 75714832 (+)
G1111974 NA non-coding downstream 94043 75758364 ~ 75758649 (+)
G1111805 LOC105030512 other upstream 236802 75418789 ~ 75423163 (+)
G1111126 LOC106578813 other upstream 611609 74960266 ~ 75048356 (+)
G1109786 NA other upstream 1813171 73846255 ~ 73846794 (+)
G1109778 NA other upstream 1825359 73833643 ~ 73834606 (+)
LOC110538462 rpc11 other upstream 2274098 73384755 ~ 73386199 (+)
G1111961 NA other downstream 80818 75745139 ~ 75745620 (+)
G1111970 LOC106601177 other downstream 86549 75750870 ~ 75753593 (+)
LOC110538356 LOC106607146 other downstream 184284 75838066 ~ 75853712 (+)
G1111968 LOC106601158 other downstream 231291 75895612 ~ 75895873 (+)

Expression


Co-expression Network