XLOC_002930 (or109-6)


Basic Information

Item Value
gene id XLOC_002930
gene name or109-6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36221505 ~ 36223005 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005414
CTGTGGAAGCTTCGCAGAAGGTAGAGACTGAACCATGTGTCCTTTTTCTCTCTATTTTACTGCAGTGACTTCTTGAATTATTTGTTTGGGTCACATCAGCAACTGgaaattaaatcattatttgaACATTCTGTTATTGAGAGCATTGCAGTTCTTTTCTCACAGGTTACAAAGACCCAGACAGCAGGTGTCATGAGCTCCATACAGACAAATCCTTCAGCAAATCTGACCTTTGTTCGTCCTGCAAAATTTTTCCTCAGTGGCCTTTCTAATGTTCCACATGCAAAATACTACTATGTGTTCTTGTCTTTAGCTTATGTTGTGACTGTTTTGGGGAATTCATTTCTCATGTGTATCATGTATTTGTCCCGCAGACTTCACACAGCTAAATACATTGCTGTTTTTCATCTGGCCCTCTCTGATCTGTGTGGAAGCTCAACTGTTATTCCAAAAGTCATTGATACACTTTTATTTGATCACCAGGACGTTTCATATGAAGCATGTTTGAcacatatgttttttatttaccatttcatgaatctgcAGTCTTTAACACTACTTGTCATGGCCTACGACAGGCTGGTTGCTATTTGTTTTCCTCTACGGTATCTAGCCATTGTGACCAAGCCGTCAATGTTTCTGATCGTAGGAGTGATGTGGattttttctgtgatatattttTCAGTGCTTGTAGGTTTGGTCAACAGAATCTCTTTTTGTGGATCTCGTGTGATAGACAGTTATTTTTGTGATCAAGGCATTATCTATAAACTTGCTTGTAATGATAATTCTATAAATCTAATGATGGGAAAAATTAGTTTTGGTCTCCTAATGTGCACACCTTTCATGCTGATTGTGATCTCATATTTTTTCATTGCTCTGGCTCTGCTTAAGATTTCTCATGGTGTTGACCGGATCAAAGCCATGAAAACCTGCACCTCACATCTCATGTTGGTGGCAATCGGGTATCTACCTTTGATAAGCAATCAAATTGCAGCGTTAACAACATCTATTGATCCAAACACTCGGATATTTAACAACTCTTTGAGACAGGTAATACCATCTATGCTGAATCCCATCATATACACTCTGAAGACAGAGGAGGTCATGGAATCCATAAAAGATCTGTACAAACGAAGAAAAATTAACACAGCTATAAAAAGAATTTGATGCAGCAGGAAAAATTTGAACTAATAACAACAAATTTAATGACACTTTCACACTGTTATAATTCAACTAATATCTAAAATAACAAacctgtgtgtttatgtgtatatgtatatgatactttattattttttactttattttataagcTTAGCTGCTAATAAAACAATGTAGCCTTTTAAAGAgcttacaattttttttccagCACACCATCATCTTATATAAGCATACACTAGAACAGTGAATTACAGTAaagaaataaatttatatatcactcgtcataaatttattttttaattactgttATTTTGTAAACCAAATTTCTTCAAGTAAC

Function

symbol description
or109-6 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in olfactory rosette.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070804-7 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in olfactory rosette.

Ensembl:

ensembl_id ENSDARG00000105775

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005414 True 1501 mRNA 0.35 1 36221505 36223005

Neighbor

gene id symbol gene type direction distance location
XLOC_002929 or109-7 coding downstream 1444 36217239 ~ 36220061 (-)
XLOC_002928 or109-11 coding downstream 6923 36212575 ~ 36214582 (-)
XLOC_002927 or109-13 coding downstream 13768 36205211 ~ 36207737 (-)
XLOC_002926 BX088524.4 coding downstream 58211 36163179 ~ 36163294 (-)
XLOC_002925 NA coding downstream 127972 35811752 ~ 36093533 (-)
XLOC_002931 or109-5 coding upstream 1465 36224470 ~ 36225729 (-)
XLOC_002932 or109-4 coding upstream 7597 36230602 ~ 36231741 (-)
XLOC_002933 or109-3 coding upstream 11980 36234985 ~ 36236610 (-)
XLOC_002934 or109-2 coding upstream 14976 36237981 ~ 36240806 (-)
XLOC_002935 or109-1 coding upstream 19886 36242891 ~ 36244864 (-)
XLOC_002923 NA non-coding downstream 566825 35650584 ~ 35654680 (-)
XLOC_002922 BX663516.3 non-coding downstream 601056 35620333 ~ 35620449 (-)
XLOC_002919 NA non-coding downstream 789850 35429504 ~ 35431655 (-)
XLOC_002939 NA non-coding upstream 242338 36465343 ~ 36469895 (-)
XLOC_002942 NA non-coding upstream 372375 36595380 ~ 36610901 (-)
XLOC_002944 NA non-coding upstream 419161 36642166 ~ 36650904 (-)
XLOC_002945 AL845435.1 non-coding upstream 431192 36654197 ~ 36662611 (-)
XLOC_002955 BX323076.2 non-coding upstream 818073 37041078 ~ 37042232 (-)

Expression


Co-expression Network