LOC110538336 (LOC100380702)


Basic Information

Item Value
gene id LOC110538336
gene name LOC100380702
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 76099381 ~ 76104980 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625087.2
ATTTTTGATCCAACTTGCCTTCCATAGTCTCTTCTCGTTTTTCTCCGTCCAGTTACGATCATTCACGCGCTTGAGTCAAAGAAGATGGAAGATATTTCTTTGGACGAAGTGATACGTCGACGCGGTTTCAACAACAAAGAAACAgttaaaatGCCTATGTTCGGCAGGGGTGCAGGAGGGGTCGGGAGGACCTTTGATGCTCGACAGAAAATTGGGATGACGGATGTCAGACAGAGACTTGGTGGAGGAGGGGGAACCGCTTTTCAAGGGAAGGATGCCAGAGAGAAACTTGGCCAGAAAGATGCCCGCTTTCGAATCCGTGGAGGAGCAGGTGGGGTCCAGGATGCCCGACAGATGATCAACTCAAGGAAAGGAGGACAGAATACATTTAATGTTACCCCACAGAGTTTACAGCAGATACCAGCAGCACAGCTACAGACACATGTGCAGCAGATACAGATACACACTACCAATGACATTGCCAGTGCAAATGCCAGGCAGTTTACCCCCAACCTACAAGGAATGAACATTAGAGCTGGGGTTACACCACAGCTGGGGGGTGCACCTAAGAGGATGATGGATGCCCGTGATAGGCTGAGCCTCAAGAGGAGCATTGGAGCTCCACCAAGCCAAGGAATGGCGGCACCCATGAAGATCACCAAAACCATCCAGCAGCAAAGGCCGGTAGGGATGTCAAGTGGGATCCATATGAACATGCCAAGCAGGGGTTCCCAGTCTTTCTCAGGTGATGATGACATCCCTAGCAAACAGATGAAGACCACTACTGGCAACCATATGCTACAGTCACGGCCTGGCACCCTGGGCTGCCCTTTCACTATGTCAGCCCCCATCACTAAAGTAGTCAAAAACGATGCGTACACCGCTCCTCGTCCCCCAGTGCCTGTGGCACCCACAAGGCCCAACCCTAGTGTAGGGGCCTCCCGCTCCTCTGCTCTCGCCTTACAGCCCATCTCCAGGACCCTCAGGCAGGCAGGGCCCACAGCGGAGACCAGCTCCCAGCCTCCTCCACCCCCACAGCCTACCTTCAGTCCTCTGGAGGGGACTAAGATAACAGTGAATAATCTGCACCCCCGTGTCACTGAAGAGGACATAGTGGAGCTGTTCTGTGTGTGCGGTGCCTTGAAGCGAGCGAGGCTGGTGAAGGTGGGGATTGCTGAAGTGGTGTTTGTGAGGAAGGAGGACGCTGTGAGCGCCTATAGGAAATACAACAACCGCTGTCTGGATGGCCAGCCAATGAAGTGCAATCTTCACATACAGGGGAATGTCATCACTTCAGACCAGCCCATTCTTTTGAGGCTCAGTGACACTCCAGGCAGTGGAAGGAAAGAAGGCCTGCCCCTCTCTTTGTCTCGCCCCGGGGGTCGTCCAGCCTCCTCTCAGCCCACACCTGAGGTGGATCCCCAGACCATCCTCAAGGCCCTGTTCAAATCTACTGTCCAGACCCCCTCTACCACAGAGTCTCCTGGTTCACAGTGCACAGCCTTCCGCATTAAGATATAACTTTCTAGTACATCCACACAACAAATAATACATCCACCCTCCTGTTTGACAGAGACATCTATTGACATGATCAAATAGCATGATACTGTATTTGTATAACTTTGACAGATCATTGGCAGGTTGTAACATCTAAAATTAACACACTGATGCCGTCGTCCAGATTTTTAGGAAAGAAAAACATTTGTAGCCGTGGCATACTACATAGATGCATGTCTCATAACAGACCAATGTGAGGCAGTCTGATTTGTTCATTTATTGTTTTAATCAAACTTGGTGGGGGGATAAACTGGACAGTTGTGGGTATTTTTTGTATCACATGGTTCACTTTTACAACTGTTCAAATAGTTCACATTGAACACCCCTCTTGGAATCATGAGATGTTTTGTGCTGGTTggagttcccccccccccaacccccaaccAACCAATGGTCTCGCTATGACCTGATGCACAAACTCATGAAGATACTTGTACTGTGAACTACAGGCAGCAGTGGTTCTTGTACTGGACATAATATTAATTTTGATTTCAGAATGACTTGTACACATGCTCGTATTTCGTTGTGGTATTTGGTTTGCTGTTCTCCTTTTTGTGGCATTCAGGTTCTATGCTTATTTGTGGCTGTTATTTTACTTTTTATTGCTTTTTGTGCAGCTTAGAGAAGTCATGCTAATTTGCTCAATTTATGTTCAAATTGTCTGTAAATGGCTTTTTACAGCTGCCTTTTATGTCAGTCATGAAGATATGGTAGTGAGGTCAGATCTATGTACAAGTTAATTACTGCCAATAAATATGTTGCTTTATAAAGATGT
>XM_021625088.2
ATTTTTGATCCAACTTGCCTTCCATAGTCTCTTCTCGTTTTTCTCCGTCCAGTTACGATCATTCACGCGCTTGAGTCAAAGAAGATGGAAGATATTTCTTTGGACGAAGTGATACGTCGACGCGGTTTCAACAACAAAGAAACAgttaaaatGCCTATGTTCGGCAGGGGTGCAGGAGGGGTCGGGAGGACCTTTGATGCTCGACAGAAAATTGGGATGACGGATGTCAGACAGAGACTTGGTGGAGGAGGGGGAACCGCTTTTCAAGGGAAGGATGCCAGAGAGAAACTTGGCCAGAAAGATGCCCGCTTTCGAATCCGTGGAGGAGCAGGTGGGGTCCAGGATGCCCGACAGATGATCAACTCAAGGAAAGGAGGACAGAATACATTTAATGTTACCCCACAGAGTTTACAGCAGATACCAGCAGCACAGCTACAGACACATGTGCAGCAGATACAGATACACACTACCAATGACATTGCCAGTGCAAATGCCAGGCAGTTTACCCCCAACCTACAAGGAATGAACATTAGAGCTGGGGTTACACCACAGCTGGGGGGTGCACCTAAGAGGATGATGGATGCCCGTGATAGGCTGAGCCTCAAGAGGAGCATTGGAGCTCCACCAAGCCAAGGAATGGCGGCACCCATGAAGATCACCAAAACCATCCAGCAAAGGCCGGTAGGGATGTCAAGTGGGATCCATATGAACATGCCAAGCAGGGGTTCCCAGTCTTTCTCAGGTGATGATGACATCCCTAGCAAACAGATGAAGACCACTACTGGCAACCATATGCTACAGTCACGGCCTGGCACCCTGGGCTGCCCTTTCACTATGTCAGCCCCCATCACTAAAGTAGTCAAAAACGATGCGTACACCGCTCCTCGTCCCCCAGTGCCTGTGGCACCCACAAGGCCCAACCCTAGTGTAGGGGCCTCCCGCTCCTCTGCTCTCGCCTTACAGCCCATCTCCAGGACCCTCAGGCAGGCAGGGCCCACAGCGGAGACCAGCTCCCAGCCTCCTCCACCCCCACAGCCTACCTTCAGTCCTCTGGAGGGGACTAAGATAACAGTGAATAATCTGCACCCCCGTGTCACTGAAGAGGACATAGTGGAGCTGTTCTGTGTGTGCGGTGCCTTGAAGCGAGCGAGGCTGGTGAAGGTGGGGATTGCTGAAGTGGTGTTTGTGAGGAAGGAGGACGCTGTGAGCGCCTATAGGAAATACAACAACCGCTGTCTGGATGGCCAGCCAATGAAGTGCAATCTTCACATACAGGGGAATGTCATCACTTCAGACCAGCCCATTCTTTTGAGGCTCAGTGACACTCCAGGCAGTGGAAGGAAAGAAGGCCTGCCCCTCTCTTTGTCTCGCCCCGGGGGTCGTCCAGCCTCCTCTCAGCCCACACCTGAGGTGGATCCCCAGACCATCCTCAAGGCCCTGTTCAAATCTACTGTCCAGACCCCCTCTACCACAGAGTCTCCTGGTTCACAGTGCACAGCCTTCCGCATTAAGATATAACTTTCTAGTACATCCACACAACAAATAATACATCCACCCTCCTGTTTGACAGAGACATCTATTGACATGATCAAATAGCATGATACTGTATTTGTATAACTTTGACAGATCATTGGCAGGTTGTAACATCTAAAATTAACACACTGATGCCGTCGTCCAGATTTTTAGGAAAGAAAAACATTTGTAGCCGTGGCATACTACATAGATGCATGTCTCATAACAGACCAATGTGAGGCAGTCTGATTTGTTCATTTATTGTTTTAATCAAACTTGGTGGGGGGATAAACTGGACAGTTGTGGGTATTTTTTGTATCACATGGTTCACTTTTACAACTGTTCAAATAGTTCACATTGAACACCCCTCTTGGAATCATGAGATGTTTTGTGCTGGTTggagttcccccccccccaacccccaaccAACCAATGGTCTCGCTATGACCTGATGCACAAACTCATGAAGATACTTGTACTGTGAACTACAGGCAGCAGTGGTTCTTGTACTGGACATAATATTAATTTTGATTTCAGAATGACTTGTACACATGCTCGTATTTCGTTGTGGTATTTGGTTTGCTGTTCTCCTTTTTGTGGCATTCAGGTTCTATGCTTATTTGTGGCTGTTATTTTACTTTTTATTGCTTTTTGTGCAGCTTAGAGAAGTCATGCTAATTTGCTCAATTTATGTTCAAATTGTCTGTAAATGGCTTTTTACAGCTGCCTTTTATGTCAGTCATGAAGATATGGTAGTGAGGTCAGATCTATGTACAAGTTAATTACTGCCAATAAATATGTTGCTTTATAAAGATGT
>XM_036938473.1
CAGTTACGATCATTCACGCGCTTGAGTCAAAGAAGATGGAAGATATTTCTTTGGACGAAGTGATACGTCGACGCGGTTTCAACAACAAAGAAACAgttaaaatgtattaatttagCAATTTATGAGTTTGAATGCAATTTATGAACGGCCTATGTTCGGCAGGGGTGCAGGAGGGGTCGGGAGGACCTTTGATGCTCGACAGAAAATTGGGATGACGGATGTCAGACAGAGACTTGGTGGAGGAGGGGGAACCGCTTTTCAAGGGAAGGATGCCAGAGAGAAACTTGGCCAGAAAGATGCCCGCTTTCGAATCCGTGGAGGAGCAGGTGGGGTCCAGGATGCCCGACAGATGATCAACTCAAGGAAAGGAGGACAGAATACATTTAATGTTACCCCACAGAGTTTACAGCAGATACCAGCAGCACAGCTACAGACACATGTGCAGCAGATACAGATACACACTACCAATGACATTGCCAGTGCAAATGCCAGGCAGTTTACCCCCAACCTACAAGGAATGAACATTAGAGCTGGGGTTACACCACAGCTGGGGGGTGCACCTAAGAGGATGATGGATGCCCGTGATAGGCTGAGCCTCAAGAGGAGCATTGGAGCTCCACCAAGCCAAGGAATGGCGGCACCCATGAAGATCACCAAAACCATCCAGCAGCAAAGGCCGGTAGGGATGTCAAGTGGGATCCATATGAACATGCCAAGCAGGGGTTCCCAGTCTTTCTCAGGTGATGATGACATCCCTAGCAAACAGATGAAGACCACTACTGGCAACCATATGCTACAGTCACGGCCTGGCACCCTGGGCTGCCCTTTCACTATGTCAGCCCCCATCACTAAAGTAGTCAAAAACGATGCGTACACCGCTCCTCGTCCCCCAGTGCCTGTGGCACCCACAAGGCCCAACCCTAGTGTAGGGGCCTCCCGCTCCTCTGCTCTCGCCTTACAGCCCATCTCCAGGACCCTCAGGCAGGCAGGGCCCACAGCGGAGACCAGCTCCCAGCCTCCTCCACCCCCACAGCCTACCTTCAGTCCTCTGGAGGGGACTAAGATAACAGTGAATAATCTGCACCCCCGTGTCACTGAAGAGGACATAGTGGAGCTGTTCTGTGTGTGCGGTGCCTTGAAGCGAGCGAGGCTGGTGAAGGTGGGGATTGCTGAAGTGGTGTTTGTGAGGAAGGAGGACGCTGTGAGCGCCTATAGGAAATACAACAACCGCTGTCTGGATGGCCAGCCAATGAAGTGCAATCTTCACATACAGGGGAATGTCATCACTTCAGACCAGCCCATTCTTTTGAGGCTCAGTGACACTCCAGGCAGTGGAAGGAAAGAAGGCCTGCCCCTCTCTTTGTCTCGCCCCGGGGGTCGTCCAGCCTCCTCTCAGCCCACACCTGAGGTGGATCCCCAGACCATCCTCAAGGCCCTGTTCAAATCTACTGTCCAGACCCCCTCTACCACAGAGTCTCCTGGTTCACAGTGCACAGCCTTCCGCATTAAGATATAACTTTCTAGTACATCCACACAACAAATAATACATCCACCCTCCTGTTTGACAGAGACATCTATTGACATGATCAAATAGCATGATACTGTATTTGTATAACTTTGACAGATCATTGGCAGGTTGTAACATCTAAAATTAACACACTGATGCCGTCGTCCAGATTTTTAGGAAAGAAAAACATTTGTAGCCGTGGCATACTACATAGATGCATGTCTCATAACAGACCAATGTGAGGCAGTCTGATTTGTTCATTTATTGTTTTAATCAAACTTGGTGGGGGGATAAACTGGACAGTTGTGGGTATTTTTTGTATCACATGGTTCACTTTTACAACTGTTCAAATAGTTCACATTGAACACCCCTCTTGGAATCATGAGATGTTTTGTGCTGGTTggagttcccccccccccaacccccaaccAACCAATGGTCTCGCTATGACCTGATGCACAAACTCATGAAGATACTTGTACTGTGAACTACAGGCAGCAGTGGTTCTTGTACTGGACATAATATTAATTTTGATTTCAGAATGACTTGTACACATGCTCGTATTTCGTTGTGGTATTTGGTTTGCTGTTCTCCTTTTTGTGGCATTCAGGTTCTATGCTTATTTGTGGCTGTTATTTTACTTTTTATTGCTTTTTGTGCAGCTTAGAGAAGTCATGCTAATTTGCTCAATTTATGTTCAAATTGTCTGTAAATGGCTTTTTACAGCTGCCTTTTATGTCAGTCATGAAGATATGGTAGTGAGGTCAGATCTATGTACAAGTTAATTACTGCCAATAAATATGTTGCTTTATAAAGATGT
>XM_021625089.2
ACGATCATTCACGCGCTTGAGTCAAAGAAGATGGAAGATATTTCTTTGGACGAAGTGATACGTCGACGCGGTTTCAACAACAAAGAAACAgttaaaatgtattaatttagCAATTTATGAGTTTGAATGCAATTTATGAACGGTATGCCTTGAGTTGTATCATTCAACGTAATGAAAAAAATCCTTTTCCAGGAAGCCTAGGCTATTTCAATTCCTCAGCGGTCCTGTTCAAGGCCTGTACTCGCCGTTGGATTAGCTACAATCATGTAGCTACTATATCGTTTCACTGCAGACACTGATTTCCCTAATATCAACGAGCCAAATACGCACAGCTAGCTATTTATCAGGGCTCCGTTTAACTAGttagctaacaaggtaaaaaaaataatgtttttatcaGCATTTGATGACGGCCTATGTTCGGCAGGGGTGCAGGAGGGGTCGGGAGGACCTTTGATGCTCGACAGAAAATTGGGATGACGGATGTCAGACAGAGACTTGGTGGAGGAGGGGGAACCGCTTTTCAAGGGAAGGATGCCAGAGAGAAACTTGGCCAGAAAGATGCCCGCTTTCGAATCCGTGGAGGAGCAGGTGGGGTCCAGGATGCCCGACAGATGATCAACTCAAGGAAAGGAGGACAGAATACATTTAATGTTACCCCACAGAGTTTACAGCAGATACCAGCAGCACAGCTACAGACACATGTGCAGCAGATACAGATACACACTACCAATGACATTGCCAGTGCAAATGCCAGGCAGTTTACCCCCAACCTACAAGGAATGAACATTAGAGCTGGGGTTACACCACAGCTGGGGGGTGCACCTAAGAGGATGATGGATGCCCGTGATAGGCTGAGCCTCAAGAGGAGCATTGGAGCTCCACCAAGCCAAGGAATGGCGGCACCCATGAAGATCACCAAAACCATCCAGCAGCAAAGGCCGGTAGGGATGTCAAGTGGGATCCATATGAACATGCCAAGCAGGGGTTCCCAGTCTTTCTCAGGTGATGATGACATCCCTAGCAAACAGATGAAGACCACTACTGGCAACCATATGCTACAGTCACGGCCTGGCACCCTGGGCTGCCCTTTCACTATGTCAGCCCCCATCACTAAAGTAGTCAAAAACGATGCGTACACCGCTCCTCGTCCCCCAGTGCCTGTGGCACCCACAAGGCCCAACCCTAGTGTAGGGGCCTCCCGCTCCTCTGCTCTCGCCTTACAGCCCATCTCCAGGACCCTCAGGCAGGCAGGGCCCACAGCGGAGACCAGCTCCCAGCCTCCTCCACCCCCACAGCCTACCTTCAGTCCTCTGGAGGGGACTAAGATAACAGTGAATAATCTGCACCCCCGTGTCACTGAAGAGGACATAGTGGAGCTGTTCTGTGTGTGCGGTGCCTTGAAGCGAGCGAGGCTGGTGAAGGTGGGGATTGCTGAAGTGGTGTTTGTGAGGAAGGAGGACGCTGTGAGCGCCTATAGGAAATACAACAACCGCTGTCTGGATGGCCAGCCAATGAAGTGCAATCTTCACATACAGGGGAATGTCATCACTTCAGACCAGCCCATTCTTTTGAGGCTCAGTGACACTCCAGGCAGTGGAAGGAAAGAAGGCCTGCCCCTCTCTTTGTCTCGCCCCGGGGGTCGTCCAGCCTCCTCTCAGCCCACACCTGAGGTGGATCCCCAGACCATCCTCAAGGCCCTGTTCAAATCTACTGTCCAGACCCCCTCTACCACAGAGTCTCCTGGTTCACAGTGCACAGCCTTCCGCATTAAGATATAACTTTCTAGTACATCCACACAACAAATAATACATCCACCCTCCTGTTTGACAGAGACATCTATTGACATGATCAAATAGCATGATACTGTATTTGTATAACTTTGACAGATCATTGGCAGGTTGTAACATCTAAAATTAACACACTGATGCCGTCGTCCAGATTTTTAGGAAAGAAAAACATTTGTAGCCGTGGCATACTACATAGATGCATGTCTCATAACAGACCAATGTGAGGCAGTCTGATTTGTTCATTTATTGTTTTAATCAAACTTGGTGGGGGGATAAACTGGACAGTTGTGGGTATTTTTTGTATCACATGGTTCACTTTTACAACTGTTCAAATAGTTCACATTGAACACCCCTCTTGGAATCATGAGATGTTTTGTGCTGGTTggagttcccccccccccaacccccaaccAACCAATGGTCTCGCTATGACCTGATGCACAAACTCATGAAGATACTTGTACTGTGAACTACAGGCAGCAGTGGTTCTTGTACTGGACATAATATTAATTTTGATTTCAGAATGACTTGTACACATGCTCGTATTTCGTTGTGGTATTTGGTTTGCTGTTCTCCTTTTTGTGGCATTCAGGTTCTATGCTTATTTGTGGCTGTTATTTTACTTTTTATTGCTTTTTGTGCAGCTTAGAGAAGTCATGCTAATTTGCTCAATTTATGTTCAAATTGTCTGTAAATGGCTTTTTACAGCTGCCTTTTATGTCAGTCATGAAGATATGGTAGTGAGGTCAGATCTATGTACAAGTTAATTACTGCCAATAAATATGTTGCTTTATAAAGATGT

Function

NR:

description
polymerase delta-interacting protein 3-like isoform X1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K22414 POLDIP3; polymerase delta-interacting protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625087.2 False 2332 mRNA 0.48 10 76099381 76104980
XM_021625088.2 False 2329 mRNA 0.48 10 76099381 76104980
XM_036938473.1 False 2327 mRNA 0.48 10 76099430 76104980
XM_021625089.2 True 2592 mRNA 0.47 10 76099435 76104980

Neighbor

gene id symbol gene type direction distance location
LOC110538340 NA coding upstream 6397 76090108 ~ 76092984 (+)
ndua6 ndua6 coding upstream 14682 76082077 ~ 76084699 (+)
LOC110538337 LOC106607129 coding upstream 17541 76056713 ~ 76081840 (+)
LOC110538341 nol12 coding upstream 50046 76046993 ~ 76049335 (+)
LOC110538342 srebf2 coding upstream 55119 76030989 ~ 76044262 (+)
LOC110538334 wbp2 coding downstream 8299 76113279 ~ 76119162 (+)
LOC110538964 LOC106601209 coding downstream 59009 76163989 ~ 76173170 (+)
LOC110538963 grin2b coding downstream 69155 76174135 ~ 76287434 (+)
LOC110538328 LOC106601207 coding downstream 197124 76302104 ~ 76327286 (+)
LOC118937910 NA coding downstream 245304 76350284 ~ 76350336 (+)
LOC110538343 LOC106607134 non-coding upstream 69075 76026442 ~ 76030307 (+)
G1112092 NA non-coding upstream 77415 76021540 ~ 76021966 (+)
G1112080 NA non-coding upstream 79041 76019908 ~ 76020340 (+)
G1112087 NA non-coding upstream 102705 75995945 ~ 75996676 (+)
G1112060 NA non-coding upstream 118340 75978066 ~ 75981041 (+)
G1112113 NA non-coding downstream 3742 76108722 ~ 76108943 (+)
G1112114 NA non-coding downstream 4714 76109694 ~ 76110990 (+)
G1112115 NA non-coding downstream 6542 76111522 ~ 76111878 (+)
G1112121 NA non-coding downstream 21529 76126509 ~ 76126725 (+)
G1112139 NA non-coding downstream 36372 76141352 ~ 76141656 (+)
G1111968 LOC106601158 other upstream 203508 75895612 ~ 75895873 (+)
LOC110538356 LOC106607146 other upstream 245669 75838066 ~ 75853712 (+)
LOC110538360 LOC104946491 other upstream 311090 75774976 ~ 75790602 (+)
G1111970 LOC106601177 other upstream 345788 75750870 ~ 75753593 (+)
G1111961 NA other upstream 353761 75745139 ~ 75745620 (+)
G1112079 NA other downstream 182618 76287598 ~ 76288502 (+)
G1112082 NA other downstream 195080 76300060 ~ 76300527 (+)
LOC100136171 LOC100136171 other downstream 359804 76464742 ~ 76470326 (+)
LOC110538313 LOC106601291 other downstream 625915 76730857 ~ 76732118 (+)
G1113861 LOC100136012 other downstream 1486741 77591721 ~ 77624996 (+)

Expression


Co-expression Network