LOC110538334 (wbp2)


Basic Information

Item Value
gene id LOC110538334
gene name wbp2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 76113279 ~ 76119162 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625085.2
GGGAAACAATGTTGGCAAACGGAACATTGCAGTCACAGCACATGAAACAGCTGATCCTGTGACGTAACACTTTGAGGTTTTTGGGGCATTCCTCTCATTTCCAGTGTGTAGCTGTACCTGACGAAGAGTACATTAGACTATCTGAACATGGCTTTAAATCGAAATCATTCTCAAAACGGAGGAGTTTTGATAAACAACGGCGAGAGTGTGTTGAGGGAATGCAAGAATGTGGAGCTGTCCTTCAGTGATGTCACCAGCAAGACAGACCTGCTGAGGGGGACCAAGAAAGGGACTGTTTACCTCACTCCATACAGGTTGGTGTTTGTGTCCAGTAATGCCAAGGACAGCCTGGGGTCTGTGATGTTCCCGTACTACCTGATGAAGGGCTGCAGCATTGAGCAGCCAGTCTTCGCCGCCAATTACATCAGGGGCACAGTGTCTGCTGAAGCTGGGGGAGGCTGGGAAGGCCAGGCTAGCTTCAAGATGTCTTTTTCCAGTGGGGGAGCCATCGAGTTAGGTCAGCACCTCTTCAAACTGGCAACAAATGCATCTCGTGCCCCTCCTGCTCAAAACGGAGGTGCCTCCTTTGGCTATCCCTCTCCTGGAGTGATGAATGGCTACGGCCCACCACCTGTTCCTCAGAACTACCCGTATGAATCCCCACCCCAGCAGAATGGTTTCTACCAGCCTCCCCCAGGCAACATGGGCTATCCCTACCCTATGGCAGCCGCAGGAATGTACCCATCTGCCCCTGCCTACATGGCCCCACCTCCCCCCTATCCTGGGCCCCCTCAAAACTGGGCTGCTCCCCCTGCAGGTAATGCCAAGGCAGCAGAGGCAGCAGGCAGCGCCTATTTCAACCCCAACAACCCCCACAATGTCTACATGCCCATGGAACAGCCTCCTCCCTATGCACCTTCTGCCCCTCCTGCTCCTTACCCAGGCTATCCAGAGAAGAAGAACAACTAAAGCTCAATAACCATCATCCCCTAATAAATGCAACAGCAAATTATTAATCGGATCATAATTATTAGACTGGAAAGGAAAGTATAAAGTACAACATTGACAAAAAGGCAATATTATTTTCTGGCAATTCACACAAGTAATTTTGAGGCACAACAATGTTGGGACATTTTCAAATGATGAATGTTTCCTTTTAATCATGAGTAAAGCTTTATTTCACCCCCTCCCACTCAGTTTATTTTGTCAATTGCCAAGTAAATGGTTATTCACGTAACGGATAAGTATTCAATCTTTTCAGTTATCATGgtcggctctctctccctcagtctgttAGAATGTGGAACTGTCCTGTACTTGGGAAAGGGTTTCTAACTGCCCTGTTGAGGTACATGTGAGGGGCAGTATGGGGAATGTATAGGCATTAAATATTTACAGCATTTTTTAAATCCAGAGGTTTATtaccaaaatacattttataacaATTTTCGATTAAAATGATGATGCATATTAACAAAACGACAATTTCTATTCCTACTAGTattgtaaagtatttttacaTTCACGTTCACAGTAAGTGTTTCCATTGTGTTGGTGCGTGGTTTAAGTTTTTTCCAGAGAGCCTTGAATGAAAGCTGAAGTTCCCAGTGCTCTCAATTTACACCATACCTTTCTGGATTATTTCTGGCTTTTTATTGAAGGAAGTGCATGTTGTTTGAATATGGCAATTGGATGGAGTACTGACATGTACCGCTATGTATGTGAGATTATTGGTAATGTGCAATGTTCCTAGATCTCACAAATAACTTGTTGAGCCTAGAGATGATAACTGGTCACATGAATAACCCATGCCCTAGTCGAACCCTGTATATTGTATCGATGAATGCAAAGCCCGGCTGAAACCAAAACCCTACTCTGTGCAATTACACAAGTGTGGGGTTACTAGGCCATGTATTTATTTAGCCGCTAGCCCGCTACACAGTGCTTTCTTGCAGTTGTGACGAATTAACCTGTGAAAACCACTAATTTATTCCTGTTTAAACTGGGTTATAGTGACTAACAGACCATAATAATTGCTATTTTAGTGCATAGTGAGGACATGTTGTACTAGTTTTAGGTTATAGGTTTGGTTGGTTTTAAGTATCTGCTTAAATTAATCAAATGTCTGAAATATCTTGTTTGTAAACCATACTCCTTATTTTGAGTTCTTCATATTGATTCAAAAtctaataataaataaatgtttatgtAAAACCTA

Function

symbol description
wbp2 Predicted to enable chromatin DNA binding activity and transcription coactivator activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to act upstream of or within cellular response to estrogen stimulus and positive regulation of gene expression, epigenetic. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 107. Orthologous to human WBP2 (WW domain binding protein 2).

NR:

description
WW domain-binding protein 2-like

GO: NA

KEGG:

id description
K22524 WBP2; WW domain-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625085.2 True 2218 mRNA 0.43 8 76113279 76119162

Neighbor

gene id symbol gene type direction distance location
LOC110538965 zg14 coding upstream 6498 76104913 ~ 76106781 (+)
LOC110538336 LOC100380702 coding upstream 8299 76099381 ~ 76104980 (+)
LOC110538340 NA coding upstream 20295 76090108 ~ 76092984 (+)
ndua6 ndua6 coding upstream 28580 76082077 ~ 76084699 (+)
LOC110538337 LOC106607129 coding upstream 31439 76056713 ~ 76081840 (+)
LOC110538964 LOC106601209 coding downstream 44827 76163989 ~ 76173170 (+)
LOC110538963 grin2b coding downstream 54973 76174135 ~ 76287434 (+)
LOC110538328 LOC106601207 coding downstream 182942 76302104 ~ 76327286 (+)
LOC118937910 NA coding downstream 231122 76350284 ~ 76350336 (+)
LOC110538327 LOC106601204 coding downstream 233746 76352908 ~ 76359278 (+)
G1112115 NA non-coding upstream 1401 76111522 ~ 76111878 (+)
G1112114 NA non-coding upstream 2289 76109694 ~ 76110990 (+)
G1112113 NA non-coding upstream 4336 76108722 ~ 76108943 (+)
LOC110538343 LOC106607134 non-coding upstream 82973 76026442 ~ 76030307 (+)
G1112092 NA non-coding upstream 91313 76021540 ~ 76021966 (+)
G1112121 NA non-coding downstream 7347 76126509 ~ 76126725 (+)
G1112139 NA non-coding downstream 22190 76141352 ~ 76141656 (+)
G1112145 NA non-coding downstream 28848 76148010 ~ 76148220 (+)
G1112153 NA non-coding downstream 40973 76160135 ~ 76160471 (+)
G1112154 NA non-coding downstream 42861 76162023 ~ 76162238 (+)
G1111968 LOC106601158 other upstream 217406 75895612 ~ 75895873 (+)
LOC110538356 LOC106607146 other upstream 259567 75838066 ~ 75853712 (+)
LOC110538360 LOC104946491 other upstream 324988 75774976 ~ 75790602 (+)
G1111970 LOC106601177 other upstream 359686 75750870 ~ 75753593 (+)
G1111961 NA other upstream 367659 75745139 ~ 75745620 (+)
G1112079 NA other downstream 168436 76287598 ~ 76288502 (+)
G1112082 NA other downstream 180898 76300060 ~ 76300527 (+)
LOC100136171 LOC100136171 other downstream 345622 76464742 ~ 76470326 (+)
LOC110538313 LOC106601291 other downstream 611733 76730857 ~ 76732118 (+)
G1113861 LOC100136012 other downstream 1472559 77591721 ~ 77624996 (+)

Expression


Co-expression Network