LOC110538335 (LOC106601210)


Basic Information

Item Value
gene id LOC110538335
gene name LOC106601210
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 76113299 ~ 76125699 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625086.2
ATTCGTGTGGCTCAGTGGCTGTAAATCGTCAACTCGTCTAGTGAGCTAGGAGCAAGATTCACTATTTCAACCTAGTTGTACTACTAGGTAACAACATCAGATAAACACGTGAATAGATATGTTCTGATTTGATTTGTCCAATAAGGTCCGAGGATCAAGGAAAGGAGTGTACAGCATATTTTAAGTGAATCTCCTTATGTAGGCAGGCTAGATTATGAAATAAGAACAAGTTATTTCAAAGGAAGCAAAAGCTACAATAACACAGGCGATAACATAGCATAAAGGGACAACGCGCGCAGCAGAGTGGTGACCTGGCCAGAGCGCGATGTTTGGAATGATAAAGAATACAATTTTCGGGAACACCGAAGAAACGGACTACAAATTGCTCAGCAGCGAGATCAAGGAGGGGGTCAGCTATGAGGTGCGGCGGTACGATGGTGCAAAGTATGCCTCAGTGAGCTCAGAGGGGCGGACCTTTGACCAGGTGACTGGGGAGCTAGTGAGGAAGCTGCTCATGTACATTGGGGGAAGCAACGACCAAGGGGAGGCAATGGGGATGACAGCACCGGTTATCATCACAGTATATCCCAGGGACGACGGTGTGATGTCACGCCGTCTGGTGGTTAGCCTCAGGATTCCCACCAACTACCAAGTCAGTCCCCCTGTACCCATCGACAGTGCCATCAGAATCGAGGATCGACCCGGCATGACTGTCTACTCACTGCAGTTTGGAGGCTTCGCAGGGGAGACTGAGTACCGTGCAGAGGCCTCTCGCCTAACCAAAACTCTTGGTGAGACTGCCCCATTTCAGCGGAAACAGTACTTCTGCTGCACCTACGACCCGCCAATGAAACCCTACGGCCGACGCAACGAGGTGTGGTTCCTACAGGAGGAGCCATAAGGGAAGCATTAAGACCGACTCTTAATAATAAACTATAGTCacttcctctccttcatcttcaCTGATCACTCCACATCTTGATCTTCATCCCCAAAAAATTGGATATGTGAAAATAATATGACAACAAACAACAGGGGATTTGTTTTCAGATCAGTGCAAATGAAGGAGAGGTGATGCAAAGAAGTGTATTAGACTATTGAAAGGTCATAAAGGGGAGGGATGGGCAGCGGGCTACATAGTtactggtccaaagtagtgcaatAGTATGGTACCATTATCAGTAACTGGATATTAAGTGGCCTGGGGTAGGAGCCACTAACCACAATGTACCGCTGTGTTATAGGTGGTACATCATTAAGTTCTTATTTTGTACACCCAGGGGATTGGAAATAAACTAGGAATTGAGCCATAGAGTAGTGATAGTCAAATGTTTTCCTGAGTATGAATTAGTTGGTGGGGAGGGTATGAAGGGGAAATGTGTTAGTCATTCCTTAAGTGTTATCATTTGAGATGTCTAATCCTTCTGTGATGACATGAAAACTTTAACACAGCAGTTGTGTGTAGTGAATGTTTTGGCGTGCTTGTATTTGGAGTCTTTGAATTGTAATGTTATTATGATTCTTGAAACTGTATTTTGAAATACCTCTGTATGGTGTGTGATTTTCTGTGAAAATATGGAGTGACGATATCATCAGGATTTGATAGCGTTTCATATCATATTTATTCAAGATATTACTAATACGATTTTTTTGTGCAAAACTGACGTTTTCTTTTTTTTAGTTCAATACAAAAGAATGCTTAAAGTACTGGCACACCACTGTTTTGGATAGGTTTTacataaacatttatttattattagaTTTTGAATCAATATGAAGAACTCAAAATAAGGAGTATGGTTTACAAACAAGATATTTCAGACATTTGATTAATTTAAGCAGATACTTAAAACCAACCAAACCTATAACCTAAAACTAGTACAACATGTCCTCACTATGCACTAAAATAGCAATTATTATGGTCTGTTAGTCACTATAACCCAGTTTAAACAGGAATAAATTAGTGGTTTTCACAGGTTAATTCGTCACAACTGCAAGAAAGCACTGTGTAGCGGGCTAGCGGCTAAATAAATACATGGCCTAGTAACCCCACACTTGTGTAATT
>TU1265286
ctccagtctagtaggtgacgggcaatgcaacatttattggatgccaaaCGCTATTAAACCTCATAGAAGAAAAAGGATTGTCTTCCAACAGGCACACGGGACCAGTAAACATACCCTGTATGGAGTGAGGTAAACAGTCCCTTTCTTGGTCCCCCTCAGCAGGTCTGTCTTGCTGGTGACATCACTGAAGGACAGCTCCACATTCTTGCATTCCCTCAACACACTAAAAGTGAGCTTCGTGGCGATTAATGATTCACTAACCTCTCGCCGTTGTTTATCAAAACTCCTCCGTTTTGAGAATGATTTCGATTTAAAGCCATGTTCAGATAGTCTAATGTACTCTTCGTCAGGTACAGCTACACACTGGAAATGAGAGGAATGCCCCAAAAACCTCAAAGTGTTACGTCACAGGATCAGCTGTTTCATGTGCTGTGACTGCAATGTTCC
>TU1265289
AGGTTTTacataaacatttatttattattagaTTTTGAATCAATATGAAGAACTCAAAATAAGGAGTATGGTTTACAAACAAGATATTTCAGACATTTGATTAATTTAAGCAGATACTTAAAACCAACCAAACCTATAACCTAAAACTAGTACAACATGTCCTCACTATGCACTAAAATAGCAATTATTATGGTCTGTTAGTCACTATAACCCAGTTTAAACAGGAATAAATTAGTGGTTTTCACAGGTTAATTCGTCACAACTGCAAGAAAGCACTGTGTAGCGGGCTAGCGGCTAAATAAATACATGGCCTAGTAACCCCACACTTGTGTAATTGCACAGAGTAGGGTTTTGGTTTCAGCCGGGCTTTGCATTCATCGATACAATATACAGGGTTCGACTAGGGCATGGGTTATTCATGTGACCAGTTATCATCTCTAGGCTCAACAAGTTATTTGTGAGATCTAGGAACATTGCACATTACCAATAATCTCACATACATAGCGGTACATGTCAGTACTCCATCCAATTGCCATATTCAAACAACATGCACTTCCTTCAATAAAAAGCCAGAAATAATCCAGAAAGGTATGGTGTAAATTGAGAGCACTGGGAACTTCAGCTTTCATTCAAGGCTCTCTGGAAAAAACTTAAACCACGCACCAACACAATGGAAACACTTACTGTGAACGTGAAtgtaaaaatactttacaatACTAGTAGGAATAGAAATTGTCGTTTTGTTAATATGCATCATCATTTTAATCGAAAATtgttataaaatgtattttggtaATAAACCTCTGGATTTAAAAAATGCTGTAAATATTTAATGCCTATACATTCCCCATACTGCCCCTCACATGTACCTCAACAGGGCAGTTAGAAACCCTTTCCCAAGTACAGGACAGTTCCACATTCTaacagactgagggagagagagccgacCATGATAACTGAAAAGATTGAATACTTATCCGTTACGTGAATAACCATTTACTTGGCAATTGACAAAATAAACTGAGTGGGAGGGGGTGAAATAAAGCTTTACTCATGATTAAAAGGAAACATTCATCATTTGAAAATGTCCCAACATTGTTGTGCCTCAAAATTACTTGTGTGAATTGCCAGAAAATAATATTGCCTTTTTGTCAATGTTGTACTTTATACTTTCCTTTCCAGTCTAATAATTATGATCCGATTAATAATTTGCTGTTGCATTTATTAGGGGATGATGGTTATTGAGCTTTAGTTGTTCTTCTTCTCTGGATAGCCTGGGTAAGGAGCAGGAGGGGCAGAAGGTGCATAGGGAGGAGGCTGTTCCATGGGCATGTAGACATTGTGGGGGTTGTTGGGGTTGAAATAGGCGCTGCCTGCTGCCTCTGCTGCCTTGGCATTACCTGCAGGGGGAGCAGCCCAGTTTTGAGGGGGCCCAGGATAGGGGGGAGGTGGGGCCATGTAGGCAGGGGCAGATGGGTACATTCCTGCGGCTGCCATAGGGTAGGGATAGCCCATGTTGCCTGGGGGAGGCTGGTAGAAACCATTCTGCTGGGGTGGGGATTCATACGGGTAGTTCTGAGGAACAGGTGGTGGGCCGTAGCCATTCATCACTCCAGGAGAGGGATAGCCAAAGGAGGCACCTCCGTTTTGAGCAGGAGGGGCACGAGATGCATTTGTTGCCAGTTTGAAGAGGTGCTGACCTAACTCGATGGCTCCCCCACTGGAAAAAGACATCTTGAAGCTAGCCTGGCCTTCCCAGCCTCCCCCAGCTTCAGCAGACACTGTGCCCCTGATGTAATTGGCGGCGAAGACTGGCTGCTCAATGCTGCAGCCCTTCATCAGGTAGTACGGGAACATCACAGACCCCAGGCTGTCCTTGGCATTACTGGACACAAACACCAACCTGTATGGAGTGAGGTAAACAGTCCCTTTCTTGGTCCCCCTCAGCAGGTCTGTCTTGCTGGTGACATCACTGAAGGACAGCTCCACATTCTTGCATTCCCTCAACACACTCTCGCCGTTGTTTATCAAAACTCCTCCGTTTTGAGAATGATTTCGATTTAAAGCCATGTTCAGATAGTCTAATGTACTCTTCGTCAGGTACAGCTACACACTGGAAATGAGAGGAATGCCCCAAAAACCTCAAAGTGTTACGTCACAGGATCAGCTGTTTCATGTGCTGTGACTGCAATGTTCC

Function

NR:

description
WW domain-binding protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625086.2 False 2065 mRNA 0.42 4 76118826 76125699
TU1265286 False 447 lncRNA 0.45 2 76113299 76114518
TU1265289 True 2197 lncRNA 0.43 8 76113299 76119161
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110538333 LOC106607121 coding downstream 6973 76107083 ~ 76111853 (-)
LOC118937981 NA coding downstream 20096 76098552 ~ 76099257 (-)
LOC110538338 LOC106607128 coding downstream 24167 76085941 ~ 76094659 (-)
LOC110538346 LOC106607136 coding downstream 146895 75962013 ~ 75971931 (-)
LOC110538347 LOC106601217 coding downstream 158629 75956776 ~ 75960197 (-)
LOC110538331 LOC106601211 coding upstream 1125 76126824 ~ 76136107 (-)
LOC110538329 LOC106601205 coding upstream 213881 76339580 ~ 76346185 (-)
LOC100135986 LOC100135986 coding upstream 235469 76361168 ~ 76375725 (-)
LOC110538326 LOC106601203 coding upstream 294421 76420120 ~ 76425165 (-)
LOC110538323 NA coding upstream 302857 76428548 ~ 76478939 (-)
G1112860 NA non-coding downstream 9455 76109132 ~ 76109371 (-)
G1112851 NA non-coding downstream 20352 76098155 ~ 76098474 (-)
G1112847 NA non-coding downstream 29259 76088910 ~ 76089567 (-)
G1112835 NA non-coding downstream 37008 76079186 ~ 76081818 (-)
G1112876 NA non-coding upstream 15187 76140886 ~ 76141100 (-)
G1112877 NA non-coding upstream 18553 76144252 ~ 76144516 (-)
G1112887 NA non-coding upstream 38269 76163968 ~ 76164669 (-)
G1112889 LOC106607101 non-coding upstream 41284 76166983 ~ 76167903 (-)
G1112890 NA non-coding upstream 42404 76168103 ~ 76168434 (-)
G1112697 LOC106607147 other downstream 322028 75796450 ~ 75796798 (-)
G1111672 NA other downstream 928395 75190185 ~ 75190431 (-)
G1111451 NA other downstream 1238019 74880498 ~ 74880807 (-)
G1111424 LOC106601260 other downstream 1294236 74817975 ~ 74824590 (-)
G1110941 NA other downstream 1468063 74650283 ~ 74650763 (-)
G1112997 NA other upstream 255229 76380928 ~ 76381727 (-)
G1113013 NA other upstream 287241 76412940 ~ 76414211 (-)
G1113043 LOC106601201 other upstream 358673 76484372 ~ 76485285 (-)
LOC110538302 LOC106601359 other upstream 703083 76828760 ~ 76844798 (-)

Expression

LOC110538335(LOC106601210) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 12.
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LOC110538335(LOC106601210) Expression in each Bioproject

Bar chart with 21 bars.
LOC110538335(LOC106601210) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 750.
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Co-expression Network