LOC110538323


Basic Information

Item Value
gene id LOC110538323
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 76428548 ~ 76478939 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625058.2
AGGATTAAGAATCAGGGGTATTTAAATGAAGGCCGGTTCCTTGTGTTCATTTTGCTCTTGGACTGACATGCAGCAGTAGCTCTCATTTCGAGACAGAAGCTCCTTGGAACATTTGTGAAATTAGaccTCAGCAGAAATGAACACAGCTCCCCCTGCAGGAAGCGCCCTGGCAACGCCCGCCGGAACAGCTGGCCCAACCACCCCCAAGAAGGGACCCCCCAAGTTCAAGCAGAGGCAAACCCGTACATTCAAGAGCAAGGCCCCCAAGCCTGGCCAGAAAGGATTTGGTGATGACATCCCAGGCATGGAGGGTCTTGGCACAGaCATAGCAGTGGTCTGCCCATGGGAGGCCTACGGCGACATGGAGCTCAGTGATCTGGCCAAATATGGAATCATCTAAGACTGCTGTCTCCTGCCTTCCCTTAACCTCTACGCTCTTGACCCTTTCCTTCTGTGTTAGTCTGGCGCGCCACCATAAGGCGACTGGCCATCCCCCTAAAGTCGTCTCGTCACTCCACGCTGTTCTTAAGTCTGTTGTGGTCAGGCGCTGCGGCCTGAAAGACCACATACGATAGGCAGACGGAACACTGAactgtttatttttattattatcatATAATAGTATTACACTGTATTTTATACAGGACATAAGAGATACTTGATGTGATACAACAAGACCACCCCCACCCCTCTCGACATTAGCCTACCTCGGCTcccccttccctctatccttttGTAACCACTCAGATCCCGTTAGTCCCCCAATTCCTCTGTGAACCATCAACCACAGCAATGGACGCAAGCAAAGACTAGCTATGACTAGCTTGTACTTGCTTATAGTCTACCACAGAACTGTAAATATGTCTCTGTTTCCAATGCAACCTCTACCTTCGTTACCCTCCCTTTTTTACCCCAATCTCTTTTTTTTGCATTGTGTTTTTTACTTGTTGCTGATAAGGCGTGCTACTGTGAACACACAGGAAACGAAAGGGATGAGACCAGGGAGGAGGGTGTGTGATGCTTTGTCATAGATCATTATGGTGAAGGCATTCCCTGTTATCCCTGTGGTGCTACCACACTGCCCCCTTCTTAGTGTACGGTATGCCACCaaacaaaatataaatatattgatGTGTTACAAACACATATTACCgaatgtgtatgtgtgattgTATGTCCTGATAGATCCATTAaagtttttatttt
>XM_036938508.1
AAAGAAGGTCAAACTAAATACGCTCAACCCCCCCAGTGGCTGACCTAGTAGACTGCAGTTTTGCACTCAAAGTCTTTGCTTCATGTCTGCAGTTTTGTGGTGAACCTGCTACCtttgctactgctactgttacgaATAGCCTACGCTTCAACCAAGTTCTCTTGCAGaccTCAGCAGAAATGAACACAGCTCCCCCTGCAGGAAGCGCCCTGGCAACGCCCGCCGGAACAGCTGGCCCAACCACCCCCAAGAAGGGACCCCCCAAGTTCAAGCAGAGGCAAACCCGTACATTCAAGAGCAAGGCCCCCAAGCCTGGCCAGAAAGGATTTGGTGATGACATCCCAGGCATGGAGGGTCTTGGCACAGaCATAGCAGTGGTCTGCCCATGGGAGGCCTACGGCGACATGGAGCTCAGTGATCTGGCCAAATATGGAATCATCTAAGACTGCTGTCTCCTGCCTTCCCTTAACCTCTACGCTCTTGACCCTTTCCTTCTGTGTTAGTCTGGCGCGCCACCATAAGGCGACTGGCCATCCCCCTAAAGTCGTCTCGTCACTCCACGCTGTTCTTAAGTCTGTTGTGGTCAGGCGCTGCGGCCTGAAAGACCACATACGATAGGCAGACGGAACACTGAactgtttatttttattattatcatATAATAGTATTACACTGTATTTTATACAGGACATAAGAGATACTTGATGTGATACAACAAGACCACCCCCACCCCTCTCGACATTAGCCTACCTCGGCTcccccttccctctatccttttGTAACCACTCAGATCCCGTTAGTCCCCCAATTCCTCTGTGAACCATCAACCACAGCAATGGACGCAAGCAAAGACTAGCTATGACTAGCTTGTACTTGCTTATAGTCTACCACAGAACTGTAAATATGTCTCTGTTTCCAATGCAACCTCTACCTTCGTTACCCTCCCTTTTTTACCCCAATCTCTTTTTTTTGCATTGTGTTTTTTACTTGTTGCTGATAAGGCGTGCTACTGTGAACACACAGGAAACGAAAGGGATGAGACCAGGGAGGAGGGTGTGTGATGCTTTGTCATAGATCATTATGGTGAAGGCATTCCCTGTTATCCCTGTGGTGCTACCACACTGCCCCCTTCTTAGTGTACGGTATGCCACCaaacaaaatataaatatattgatGTGTTACAAACACATATTACCgaatgtgtatgtgtgattgTATGTCCTGATAGATCCATTAaagtttttatttt
>TU1265478
GGGTATTTAAATGAAGGCCGGTTCCTTGTGTTCATTTTGCTCTTGGACTGACATGCAGCAGTAGCTCTCATTTCGAGACAGAAGCTCCTTGGAACATTTGTGAAATTAGaccTCAGCAGAAATGAACACAGCTCCCCCTGCAGGAAGCGCCCTGGCAACGCCCGCCGGAACAGCTGGCCCAACCACCCCCAAGAAGGGACCCCCCAAGTTCAAGCAGAGGCAAACCCGTACATTCAAGAGCAAGGCCCCCAAGCCTGGCCAGAAAGGATTTGGTGATGACATCCCAGGCATGGAGGGTCTTGGCACAGaCATAGCAGTGGTCTGCCCATGGGAGGCCTACGGCGACATGGAGCTCAGTGATCTGGCCAAATATGGAATCATCTAAGACTGCTGTCTCCTGCCTTCCCTTAACCTCTACGCTCTTGACCCTTTCCTTCTGTGTTAGTCTGGCGCGCCACCATAAGGCGACTGGCCATCCCCCTAAAGTCGTCTCGTCACTCCACGCTGTTCTTAAGTCTGTTGTGGTCAGGCGCTGCGGCCTGAAAGACCACATACGATAGGCAGACGGAACACTGAactgtttatttttattattatcatATAATAGTATTACACTGTATTTTATACAGGACATAAGAGATACTTGATGTGATACAACAAGACCACCCCCACCCCTCTCGACATTAGCCTACCTCGGCTcccccttccctctatccttttGTAACCACTCAGATCCCGTTAGTCCCCCAATTCCTCTGTGAACCATCAACCACAGCAATGGACGCAAGCAAAGACTAGCTATGACTAGCTTGTACTTGCTTATAGTCTACCACAGAACTGTAAATATGTCTCTGTTTCCAATGCAACCTCTACCTTCGTTACCCTCCCTTTTTTACCCCAATCTCTTTTTTTTGCATTGTGTTTTTTACTTGTTGCTGATAAGGCGTGCTACTGTGAACACACAGGAAACGAAAGGGATGAGACCAGGGAGGAGGGTGTGTGATGCTTTGTCATAGATCATTATGGTGAAGGCATTCCCTGTTATCCCTGTGGTGCTACCACACTGCCCCCTTCTTAGTGTACGGTATGCCACCaaacaaaatataaatatattgatGTGTTACAAACACATATTACCgaatgtgtatgtgtgattgTATGTCCTGATAGATCCATTAaagtttttattttcaataatc

Function

NR:

description
retinal cone rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma-like isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007601 visual perception biological_process
GO:0030553 cGMP binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625058.2 False 1206 mRNA 0.47 4 76428556 76433585
XM_036938508.1 False 1249 mRNA 0.47 4 76428556 76478939
TU1265478 True 1199 TUCP 0.47 4 76428548 76433570

Neighbor

gene id symbol gene type direction distance location
LOC110538326 LOC106601203 coding downstream 3391 76420120 ~ 76425165 (-)
LOC100135986 LOC100135986 coding downstream 52831 76361168 ~ 76375725 (-)
LOC110538329 LOC106601205 coding downstream 82371 76339580 ~ 76346185 (-)
LOC110538331 LOC106601211 coding downstream 292449 76126824 ~ 76136107 (-)
LOC110538335 LOC106601210 coding downstream 302857 76113299 ~ 76125699 (-)
LOC110538317 LOC106591500 coding upstream 77983 76556922 ~ 76563120 (-)
nfixa LOC106601192 coding upstream 95349 76574288 ~ 76703398 (-)
LOC110538312 LOC106601368 coding upstream 255658 76734597 ~ 76747739 (-)
LOC110538311 tsn16 coding upstream 270325 76749264 ~ 76757927 (-)
LOC110539169 LOC107548868 coding upstream 279313 76758252 ~ 76759472 (-)
G1112992 NA non-coding downstream 51387 76376651 ~ 76377169 (-)
G1112982 NA non-coding downstream 92977 76335340 ~ 76335579 (-)
G1112969 NA non-coding downstream 129152 76299163 ~ 76299404 (-)
G1112965 NA non-coding downstream 130492 76297830 ~ 76298064 (-)
G1113104 NA non-coding upstream 107594 76586533 ~ 76636296 (-)
G1113130 NA non-coding upstream 151485 76630424 ~ 76630909 (-)
G1113184 NA non-coding upstream 251957 76730896 ~ 76731287 (-)
G1113198 NA non-coding upstream 305741 76784680 ~ 76784922 (-)
LOC110538308 epor non-coding upstream 307357 76786296 ~ 76793231 (-)
G1113013 NA other downstream 14345 76412940 ~ 76414211 (-)
G1112997 NA other downstream 46829 76380928 ~ 76381727 (-)
G1112697 LOC106607147 other downstream 631758 75796450 ~ 75796798 (-)
G1111672 NA other downstream 1238125 75190185 ~ 75190431 (-)
G1111451 NA other downstream 1547749 74880498 ~ 74880807 (-)
G1113043 LOC106601201 other upstream 5433 76484372 ~ 76485285 (-)
LOC110538302 LOC106601359 other upstream 349843 76828760 ~ 76844798 (-)
G1114604 LOC106607027 other upstream 1003172 77482111 ~ 77484731 (-)
LOC110538477 LOC106607035 other upstream 1131906 77610820 ~ 77612826 (-)
G1114714 NA other upstream 1215556 77694495 ~ 77695275 (-)

Expression


Co-expression Network